View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0628_low_22 (Length: 285)
Name: NF0628_low_22
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0628_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 273
Target Start/End: Complemental strand, 18253096 - 18252853
Alignment:
| Q |
30 |
ggaaatgcaacaatccttgtggaaaaatcataacatcacctttgtgaagtgttttaaggtaaacaacattgtcagaggaaacaaaaccagcactgattgt |
129 |
Q |
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| T |
18253096 |
ggaaatgcaacaatccttgtggaaaaatcataacatcacctttgtgaagtgttttaaggtaaacaacattgtcagaggaaacaaaaccagcactgattgt |
18252997 |
T |
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| Q |
130 |
tcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataacaccaccgacggctatatctaaacgcgcaatggagattccaaga |
229 |
Q |
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| T |
18252996 |
tcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataacaccaccaacggctatatctaaacgagcaatggaaattccaaga |
18252897 |
T |
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| Q |
230 |
ccgtttacaccgggaaattgttcgtctattgcagtggcaacagc |
273 |
Q |
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| T |
18252896 |
ccgtttacaccgggaaattgtgcgtctattgcagtggtaacagc |
18252853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 273
Target Start/End: Original strand, 18256472 - 18256715
Alignment:
| Q |
30 |
ggaaatgcaacaatccttgtggaaaaatcataacatcacctttgtgaagtgttttaaggtaaacaacattgtcagaggaaacaaaaccagcactgattgt |
129 |
Q |
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| T |
18256472 |
ggaaatgcaacaatccttgtggaaaaatcataacatcacctttgtgaagtgttttaaggtaaacaacattgtcagaggaaacaaaaccagcactgattgt |
18256571 |
T |
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| Q |
130 |
tcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataacaccaccgacggctatatctaaacgcgcaatggagattccaaga |
229 |
Q |
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| T |
18256572 |
tcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataacaccacctacggctatatctaaacgtgcaatggatattccaaga |
18256671 |
T |
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| Q |
230 |
ccgtttacaccgggaaattgttcgtctattgcagtggcaacagc |
273 |
Q |
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| T |
18256672 |
ccgtttacaccgggaaattgtgcgtctattgcagtggtaacagc |
18256715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 18245992 - 18245773
Alignment:
| Q |
30 |
ggaaatgcaacaatccttgtggaaaaatcataacatcacctttgtgaagtgttttaaggtaaacaacattgtcagaggaaacaaaaccagcactgattgt |
129 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||| |||||| |
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| T |
18245992 |
ggaaatgcaacaatccttgtggaaaaaccataacatcacctttgtaaagtgttttaatgtaaacagtgttggcagaggaaacaaaaccagcacagattgt |
18245893 |
T |
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| Q |
130 |
tcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataacaccaccgacggctatatctaaacgcgcaatggagattccaaga |
229 |
Q |
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||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||| ||| ||||||||| |
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| T |
18245892 |
tccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaagggaaattccaaga |
18245793 |
T |
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| Q |
230 |
ccgtttacaccgggaaattg |
249 |
Q |
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||||||| ||| | |||||| |
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| T |
18245792 |
ccgtttaaaccagcaaattg |
18245773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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