View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0628_low_23 (Length: 273)
Name: NF0628_low_23
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0628_low_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 273
Target Start/End: Original strand, 44697089 - 44697332
Alignment:
| Q |
30 |
gatgaaccttatatacaatcaaaattgagtaaaatttctcacctaacatgaagggagagaatgagaagatccaaatccaataagtaaatagtgaaggtga |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44697089 |
gatgaaccttatatacaatcaaaattgagtaaaatttctcacctaacatgaagggagagaatgagaagatccaaatccaataagtaaatagtgaaggtga |
44697188 |
T |
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| Q |
130 |
cattgttaatcaagcatacaatatatatttttgctattcatgtcaaaaatgaaaatgttacattttagggagaggccaagaaaaatgtgacgtttattcg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44697189 |
cattgttaatcaagcatacaatatatatttttgctaatcatgtcaaaaatgaaaatgttacattttagggagaggccaagaaaaatgtgacgtttattcg |
44697288 |
T |
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| Q |
230 |
taagtaaaaaatactagtccagatattgatgaatctaatagttc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44697289 |
taagtaaaaaatactagtccagatattgatgaatctaatagttc |
44697332 |
T |
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