View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0628_low_24 (Length: 268)
Name: NF0628_low_24
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0628_low_24 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 41 - 241
Target Start/End: Original strand, 29701908 - 29702108
Alignment:
| Q |
41 |
catcatcaatccaactatcataccagagatatgtttcccctcagctttcgaccaacttcgatattgggtttgataaccacctacgtacaacaccattaac |
140 |
Q |
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| T |
29701908 |
catcatcaatccaactatcataccagagatatgtttcccctcagttttcgaccaacttcaatattgggtttgataaccacctacgtacaacaccactaac |
29702007 |
T |
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| Q |
141 |
ctcccgtccaacaagttaatagctttccaccatataacgagggataggaagttttcacacatggttgtgtgtatggtgttctaatccccaccccctctct |
240 |
Q |
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| T |
29702008 |
ctcctgtccaacaagttaatagccttccaccgtataacgagggataggaagttttcacacatggttgtgtgtatggtgttctaatccccaccccctctct |
29702107 |
T |
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| Q |
241 |
g |
241 |
Q |
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| T |
29702108 |
g |
29702108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 29752140 - 29752178
Alignment:
| Q |
188 |
gaagttttcacacatggttgtgtgtatggtgttctaatc |
226 |
Q |
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| T |
29752140 |
gaagttttcacacttggctgtgtgtatggtgttctaatc |
29752178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 29762490 - 29762452
Alignment:
| Q |
44 |
catcaatccaactatcataccagagatatgtttcccctc |
82 |
Q |
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| T |
29762490 |
catcaatccaactatcataccataaatatgtttcccctc |
29762452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 232139 - 232336
Alignment:
| Q |
48 |
aatccaactatcataccagagatatgtttcccctcagctttcgaccaacttcgatattgggtttgataaccacctacgtacaacaccattaacctcccgt |
147 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||| | || |||||||| |
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| T |
232139 |
aatccaactatcataccagagatatgtttcccctcagttttcgaccaacttcgatattgcgtttgataaccacccatgtacaacacaactatcctcccgt |
232238 |
T |
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| Q |
148 |
ccaacaagtta----atagctttccaccatataacgagggataggaagttttcacacatggttgtgtgtatggtgttctaatccccaccccctctctg |
241 |
Q |
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| T |
232239 |
caaacgagttaatatatagccttccaccatataacgagggacatgaacttttcacacttggctgtgtgtatggtgttctaatccccactccctctctg |
232336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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