View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0628_low_28 (Length: 251)
Name: NF0628_low_28
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0628_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 44631556 - 44631793
Alignment:
| Q |
1 |
caaccaaatcttcatgtcattccttatgcataccaataagtcaataacatatatactttcgctctggctaggattttattttcatttttataattaggtg |
100 |
Q |
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| T |
44631556 |
caaccaaatcttcatgtcattccttatgcataccaataagtcaataacatatatactttcgctctggctaggattttattttcattttt---attaggtg |
44631652 |
T |
|
| Q |
101 |
tcatcctggtgctatgttattttgatatctatatgttttcttaactatggttatctctttcactatgaattggtatcaggctactttcaatacttcatat |
200 |
Q |
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| T |
44631653 |
tcatcctggtgctatgttattttgatttctatatgttttcttaactatggttatctctttcact----attggtatcaggctactttcaatacttcatat |
44631748 |
T |
|
| Q |
201 |
ttatgcataacatgacactctgtacatttctcatatattcttcga |
245 |
Q |
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| T |
44631749 |
ttatgcataacatgacactatgtacatttctcatatatttttcga |
44631793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 44682127 - 44682255
Alignment:
| Q |
94 |
ttaggtgtcatcctggtgctatgttattttgatatctatatgttttcttaactatggttatctctttcactatgaattggtatcaggctactttcaatac |
193 |
Q |
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|||| |||||||||||| |||||||| |||||| ||| | ||||||||||| ||||||||||||||| |||| ||||||||| ||||||| ||| |
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| T |
44682127 |
ttagttgtcatcctggtactatgttaatttgatttctttgtgttttcttaaatatggttatctctttaacta-------gtatcaggccactttcactac |
44682219 |
T |
|
| Q |
194 |
ttcatatttatgcataacatgacactctgtacattt |
229 |
Q |
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| T |
44682220 |
ttcatatgtatgcataacaagacactttgtgcattt |
44682255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 44691808 - 44691876
Alignment:
| Q |
93 |
attaggtgtcatcctggtgctatgttattttgatatctatatgttttcttaactatggttatctctttc |
161 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
44691808 |
attaggtatcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctctttc |
44691876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 44653113 - 44653216
Alignment:
| Q |
94 |
ttaggtgtcatcctggtgctatgttattttgatatctatatgttttcttaactatggttatctctttcactatgaattggtatcaggctactttcaatac |
193 |
Q |
| |
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|||| ||||||||||||||||||||| |||||| || | ||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||| |
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| T |
44653113 |
ttagttgtcatcctggtgctatgttaatttgattcctttgtgttttcttaaatatggttatctcttttacta-------gtatcaggccactttcaatac |
44653205 |
T |
|
| Q |
194 |
ttcatatttat |
204 |
Q |
| |
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|||||| |||| |
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|
| T |
44653206 |
ttcataattat |
44653216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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