View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0628_low_29 (Length: 216)
Name: NF0628_low_29
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0628_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 36562656 - 36562842
Alignment:
| Q |
13 |
agctgttgcaactcaagtccaagattggaaatcttgacgtcctgagtactattcacaccctcagcatcattcttctccttcaccaccaaatcaatcttct |
112 |
Q |
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| T |
36562656 |
agctgctgcaactcaagtccaagattggaaatcttgacgtcctgagtactattcacaccctcagcatcattcttctccttcaccaccaaatcaatcttct |
36562755 |
T |
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| Q |
113 |
ccttcaactcatcaatcaccttcatcgactcaatcgacttcttcacagccaaatccctatccttctcaagctcctcaaccttacttt |
199 |
Q |
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| T |
36562756 |
ccttcaactcatcaatcaccttcaccgactcaatcgacttcttcacagccaaatccctatccttctcaagctcctcaaccttacttt |
36562842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 952176 - 952083
Alignment:
| Q |
83 |
tcttctccttcaccaccaaatcaatcttctccttcaactcatcaatcaccttcatcgactcaatcgacttcttcacagccaaatccctatcctt |
176 |
Q |
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||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||| |||||| || ||||| ||||||| |
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| T |
952176 |
tcttctcatacaccaccaaaacaatcttctccttcaactcatcaatcaccttcatcgattcaaacaacttattcacaacctaatccttatcctt |
952083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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