View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0628_low_3 (Length: 587)

Name: NF0628_low_3
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0628_low_3
NF0628_low_3
[»] chr4 (26 HSPs)
chr4 (29-540)||(22425069-22425591)
chr4 (316-373)||(37247411-37247468)
chr4 (524-575)||(45064207-45064258)
chr4 (319-383)||(2062217-2062281)
chr4 (319-383)||(38298391-38298455)
chr4 (320-372)||(53455283-53455335)
chr4 (328-383)||(6077763-6077818)
chr4 (317-379)||(40946439-40946501)
chr4 (317-370)||(40982672-40982725)
chr4 (530-575)||(50122535-50122580)
chr4 (323-383)||(1586312-1586372)
chr4 (317-369)||(3161961-3162013)
chr4 (319-383)||(37978162-37978226)
chr4 (524-576)||(40047005-40047057)
chr4 (321-383)||(30599603-30599665)
chr4 (319-373)||(43968582-43968636)
chr4 (327-369)||(55970002-55970044)
chr4 (329-382)||(25479569-25479622)
chr4 (524-575)||(40757862-40757913)
chr4 (316-378)||(46061629-46061691)
chr4 (318-379)||(29628147-29628207)
chr4 (514-575)||(39193260-39193321)
chr4 (323-383)||(5834026-5834086)
chr4 (536-576)||(32212729-32212769)
chr4 (323-355)||(45047345-45047377)
chr4 (315-383)||(52676681-52676749)
[»] chr8 (14 HSPs)
chr8 (319-491)||(7176780-7176952)
chr8 (317-491)||(14729002-14729178)
chr8 (315-373)||(8644258-8644316)
chr8 (486-575)||(24848896-24848987)
chr8 (319-373)||(6106958-6107012)
chr8 (319-373)||(44103982-44104036)
chr8 (530-576)||(14728957-14729003)
chr8 (319-373)||(31511533-31511587)
chr8 (524-571)||(14581248-14581295)
chr8 (524-575)||(38901271-38901321)
chr8 (319-373)||(40678818-40678872)
chr8 (316-373)||(7206831-7206888)
chr8 (317-373)||(67711-67767)
chr8 (317-373)||(40229798-40229854)
[»] chr5 (18 HSPs)
chr5 (319-383)||(8433944-8434008)
chr5 (316-373)||(15635811-15635868)
chr5 (314-373)||(9784807-9784866)
chr5 (316-373)||(13542425-13542482)
chr5 (314-370)||(606625-606681)
chr5 (319-373)||(19495219-19495273)
chr5 (524-575)||(33207537-33207588)
chr5 (506-575)||(4277438-4277505)
chr5 (329-383)||(14089963-14090017)
chr5 (317-369)||(2552273-2552325)
chr5 (317-373)||(32273831-32273887)
chr5 (524-576)||(32534855-32534907)
chr5 (321-373)||(28837839-28837891)
chr5 (399-477)||(8433848-8433927)
chr5 (316-383)||(30471598-30471665)
chr5 (324-383)||(33494941-33495000)
chr5 (530-575)||(39324113-39324158)
chr5 (319-383)||(15072335-15072399)
[»] scaffold0578 (1 HSPs)
scaffold0578 (319-383)||(10138-10202)
[»] chr1 (25 HSPs)
chr1 (319-383)||(19512736-19512800)
chr1 (319-383)||(32827108-32827172)
chr1 (319-491)||(5300278-5300448)
chr1 (524-570)||(44415923-44415969)
chr1 (329-382)||(7712434-7712487)
chr1 (524-575)||(23740111-23740162)
chr1 (530-576)||(45467701-45467747)
chr1 (401-491)||(45467746-45467835)
chr1 (324-374)||(46592196-46592246)
chr1 (524-576)||(23625133-23625185)
chr1 (317-373)||(31206544-31206600)
chr1 (323-383)||(33259648-33259708)
chr1 (323-383)||(33279807-33279867)
chr1 (439-491)||(38865463-38865515)
chr1 (524-575)||(31636496-31636547)
chr1 (524-575)||(44573916-44573967)
chr1 (334-383)||(6704358-6704407)
chr1 (330-375)||(14479681-14479726)
chr1 (530-575)||(38865419-38865464)
chr1 (329-382)||(42400864-42400917)
chr1 (530-574)||(5300447-5300491)
chr1 (524-576)||(50270763-50270814)
chr1 (319-361)||(35615727-35615769)
chr1 (524-576)||(14396020-14396072)
chr1 (321-373)||(33727116-33727168)
[»] chr7 (17 HSPs)
chr7 (319-491)||(46209100-46209274)
chr7 (317-385)||(5355759-5355827)
chr7 (317-373)||(29629203-29629259)
chr7 (317-383)||(17604027-17604093)
chr7 (524-570)||(33987784-33987830)
chr7 (530-575)||(46209056-46209101)
chr7 (319-383)||(34967766-34967830)
chr7 (524-575)||(27816478-27816529)
chr7 (524-575)||(41003409-41003460)
chr7 (323-357)||(25796034-25796068)
chr7 (486-516)||(30224679-30224709)
chr7 (319-373)||(42252085-42252139)
chr7 (323-373)||(42710693-42710743)
chr7 (329-382)||(9487030-9487082)
chr7 (530-575)||(10249077-10249122)
chr7 (319-383)||(33987592-33987656)
chr7 (323-383)||(47841606-47841666)
[»] chr3 (21 HSPs)
chr3 (319-373)||(31153598-31153652)
chr3 (317-383)||(49615597-49615663)
chr3 (323-382)||(376951-377010)
chr3 (524-575)||(4489489-4489540)
chr3 (315-373)||(28963517-28963575)
chr3 (323-382)||(7885807-7885866)
chr3 (516-575)||(52669731-52669790)
chr3 (319-373)||(7932568-7932622)
chr3 (319-372)||(42760817-42760870)
chr3 (530-575)||(47968090-47968135)
chr3 (323-383)||(3432752-3432812)
chr3 (400-491)||(47968001-47968091)
chr3 (337-379)||(52120210-52120252)
chr3 (530-570)||(14476917-14476957)
chr3 (323-375)||(45707488-45707540)
chr3 (319-367)||(51305704-51305752)
chr3 (319-477)||(14476991-14477150)
chr3 (524-575)||(22909403-22909454)
chr3 (323-362)||(53143392-53143431)
chr3 (316-350)||(47967948-47967982)
chr3 (316-373)||(38138453-38138510)
[»] chr2 (15 HSPs)
chr2 (319-373)||(5552571-5552625)
chr2 (319-369)||(9976844-9976894)
chr2 (317-373)||(9707488-9707544)
chr2 (317-373)||(12392228-12392284)
chr2 (319-373)||(44277533-44277586)
chr2 (317-372)||(449384-449439)
chr2 (319-373)||(449270-449324)
chr2 (322-379)||(11915735-11915792)
chr2 (320-373)||(43301804-43301857)
chr2 (330-382)||(42056474-42056526)
chr2 (323-374)||(16118118-16118169)
chr2 (486-575)||(11915926-11916016)
chr2 (333-382)||(18379707-18379756)
chr2 (401-477)||(449167-449242)
chr2 (323-355)||(16341804-16341836)
[»] chr6 (7 HSPs)
chr6 (516-575)||(29383475-29383534)
chr6 (319-383)||(6794114-6794178)
chr6 (531-570)||(6793948-6793987)
chr6 (317-383)||(11703366-11703432)
chr6 (317-382)||(31632533-31632598)
chr6 (524-575)||(378597-378648)
chr6 (337-373)||(32025886-32025922)
[»] scaffold0110 (1 HSPs)
scaffold0110 (524-576)||(26777-26829)
[»] scaffold1114 (1 HSPs)
scaffold1114 (524-575)||(2331-2382)
[»] scaffold0154 (1 HSPs)
scaffold0154 (316-373)||(26796-26853)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 29 - 540
Target Start/End: Complemental strand, 22425591 - 22425069
Alignment:
Q  29 acgattgaggttttagttcgtttgttgttgaagcaataactctaagaatgaaataatgttaaatctttttgagaaattaagtgattgtgtttgtcactca 128  Q
    |||||||||||||||||  ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  22425591 acgattgaggttttagtgtgtttgttgttgaagcgataactttaagaatgaaataatgttaaatctttttgagagattaagtgattgtgtttgtcactta 22425492  T
Q  129 ttgtggttataaccgacttaaaagattagtctctgtatttactgcaaaggatatcgattcaaaataaatagataaacggaaactataattttgttacaca 228  Q
    ||||||||||| || ||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22425491 ttgtggttatatccaactcaaaagatcagtttctgtatttaccgcaaaggatatcgattcaaaataaatagataaacggaaactataattttgttacaca 22425392  T
Q  229 g-----------aaaaaactaaaacttggggaaatatatctaggccctaaagaattcgcaggacaaaaatgttacacaagaatttgttatttag-ccccc 316  Q
    |           ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |||||    
T  22425391 gaaaaggaaaaaaaaaaactaaaacttggggaaatatgtctaggccctaaagaattcgcacgacaaaaatgttacacaaaaatttgttgtttagcccccc 22425292  T
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgtaga-nnnnnnnnnngaggtcttaaaagatccat 415  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | ||||||| ||           ||||||||||||||||||     
T  22425291 taagagcatccacaatagtgaggtcttcaccatttaagacctgatatctaataggtacccccattgtggattattttttttgaggtcttaaaagatccaa 22425192  T
Q  416 gatctaagttaagaccctcattattaagtggacccacgtaactttttattaaaataataattctcatggcttttaatcaatttaatattataaaatagat 515  Q
    | |||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22425191 ggtctaagtt-agaccc-cattattaagtgggcccacataactttttattaaaataataattctcatggcttttaatcaatttaatattataaaatagat 22425094  T
Q  516 ataatgttttaaacaaataatattg 540  Q
    |||||||||||||||||||||||||    
T  22425093 ataatgttttaaacaaataatattg 22425069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 37247468 - 37247411
Alignment:
Q  316 ctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  37247468 ctaagagcatccacaatggtgaggtcttcaccatttaagatctggtacctaataggta 37247411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 524 - 575
Target Start/End: Original strand, 45064207 - 45064258
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  45064207 ttaaataaataatattggtgggacccaattagaccttttgttagaggatctc 45064258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 2062217 - 2062281
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||    
T  2062217 agagtatctacaatggtgaggtcttcaccatttaagatctggtacttaataggtatccccattgt 2062281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 38298391 - 38298455
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||||||||||||||||||||||||||||||||||| || |||  |||||||||| || |||||    
T  38298391 agagcatccacaatggtgaggtcttcaccatttaagatctagtacttaataggtatttctattgt 38298455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 53455335 - 53455283
Alignment:
Q  320 gagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggt 372  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||    
T  53455335 gagcatccacaatggtgagattttcaccatttaagacctggtacctaataggt 53455283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 6077818 - 6077763
Alignment:
Q  328 acaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||    
T  6077818 acaatggtgaggtcttcaccatttaagacctagtacctaataggtacttccattgt 6077763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 40946501 - 40946439
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctcca 379  Q
    ||||||||| | || |||||||||||||||||||||||| | |||| ||||||||||||||||    
T  40946501 taagagcattcccattggtgaggtcttcaccatttaagatccggtacctaataggtatctcca 40946439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 317 - 370
Target Start/End: Original strand, 40982672 - 40982725
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaatag 370  Q
    |||||||||| || |||||||||||||||||||||||||||| ||| |||||||    
T  40982672 taagagcatctacgatggtgaggtcttcaccatttaagacctagtacctaatag 40982725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 50122580 - 50122535
Alignment:
Q  530 aaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  50122580 aaataatattggtgggactcaattagaccttttgttagaggatctc 50122535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 1586312 - 1586372
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||||||||||||||||||| ||||||||||| | |||| ||| |||||| |||||||||    
T  1586312 catccacaatggtgaggtcttaaccatttaagatccggtacctattaggtacctccattgt 1586372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 3162013 - 3161961
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaata 369  Q
    ||||||||||||||||| ||||||||||||||||||||| || ||| ||||||    
T  3162013 taagagcatccacaatgttgaggtcttcaccatttaagatctagtacctaata 3161961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 37978226 - 37978162
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||||||| |||||||||| |||||||||||||||||| | ||| ||||||||||  ||||||||    
T  37978226 agagcatctacaatggtgaagtcttcaccatttaagacttagtacctaataggtacttccattgt 37978162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 524 - 576
Target Start/End: Original strand, 40047005 - 40047057
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctct 576  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||| |||||    
T  40047005 ttaaataaataatattggtgggacccaattaaactttttgttagagggtctct 40047057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 30599603 - 30599665
Alignment:
Q  321 agcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||| |||||| ||| |||||||||||||||||| || ||||||||||||||  ||||||||    
T  30599603 agcattcacaatagtggggtcttcaccatttaagatctagtatctaataggtacttccattgt 30599665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 43968636 - 43968582
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||| ||||||||||||||||||  ||||||||||| ||| ||||||||||    
T  43968636 agagcatctacaatggtgaggtcttcattatttaagacctagtacctaataggta 43968582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 55970002 - 55970044
Alignment:
Q  327 cacaatggtgaggtcttcaccatttaagacctggtatctaata 369  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  55970002 cacattggtgaggtcttcaccatttaagacctggtacctaata 55970044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 25479569 - 25479622
Alignment:
Q  329 caatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattg 382  Q
    |||| ||||||||||||||||||||||  ||||| ||||||||||||| |||||    
T  25479569 caatagtgaggtcttcaccatttaagatttggtacctaataggtatcttcattg 25479622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 575
Target Start/End: Complemental strand, 40757913 - 40757862
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| ||||||||||| |||||||||||||||| |||| ||||||| ||||    
T  40757913 ttaaataaataatattgatgggacccaattagaccttttattagagggtctc 40757862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 46061691 - 46061629
Alignment:
Q  316 ctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctcc 378  Q
    |||||| ||||| | ||||||| ||||||||||||||||| | | || |||||||||||||||    
T  46061691 ctaagaccatccccgatggtgatgtcttcaccatttaagatccgatacctaataggtatctcc 46061629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 29628207 - 29628147
Alignment:
Q  318 aagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctcca 379  Q
    ||||||||||||| ||||  |||||| ||||||||||||||| || |||||||||| |||||    
T  29628207 aagagcatccaca-tggtagggtcttgaccatttaagacctgatacctaataggtacctcca 29628147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 575
Target Start/End: Original strand, 39193260 - 39193321
Alignment:
Q  514 atataatgttttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| ||| ||||| |||||||||||||| || |||||||||  |||||||||||| ||||    
T  39193260 atatagtgtattaaataaataatattggtgagatccaattagatcttttgttagagggtctc 39193321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 5834026 - 5834086
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||||||||||||  ||| || || |||||||||| |||| |||||||||| |||||||||    
T  5834026 catccacaatggtagggttttaactatttaagacccggtacctaataggtacctccattgt 5834086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 576
Target Start/End: Complemental strand, 32212769 - 32212729
Alignment:
Q  536 tattggtgggacccaattagacattttgttagaggatctct 576  Q
    ||||||||||||||| |||||| |||||||||||| |||||    
T  32212769 tattggtgggacccatttagaccttttgttagagggtctct 32212729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 45047377 - 45047345
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaaga 355  Q
    ||||||||||||||||||||| |||||||||||    
T  45047377 catccacaatggtgaggtcttaaccatttaaga 45047345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 52676749 - 52676681
Alignment:
Q  315 cctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||||| ||| || ||| |||| |||||||||||||||||||| |||  |||||||||  ||||||||    
T  52676749 cctaagaacatacataatagtgatgtcttcaccatttaagacctagtacgtaataggtacttccattgt 52676681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 319 - 491
Target Start/End: Complemental strand, 7176952 - 7176780
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgtagannnnnnnnnngaggtcttaaaagatccatgat 418  Q
    ||||||||||| | |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||          | |||||||||||||||| | |    
T  7176952 agagcatccactacggtgaggtcttcaccatttaagacctggtagctaataggtacctccattgtggaaaaaaaattgggggtcttaaaagatccaaggt 7176853  T
Q  419 ctaagttaagaccctcattattaagtggacccacgtaactttttattaaaataataattctcatggcttttaa 491  Q
    |||| ||||||||| |||| |||| ||  ||||| | |||||||||||||||||||||| |||||||| ||||    
T  7176852 ctaacttaagacccccattcttaaatgagcccacatcactttttattaaaataataattttcatggctattaa 7176780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 317 - 491
Target Start/End: Complemental strand, 14729178 - 14729002
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccatt--gtagannnnnnnnnngaggtcttaaaagatcca 414  Q
    |||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||  | | |          ||||||||||||||||||    
T  14729178 taagagcatccacaatggcgaggtcttcatcatttaagatctggtatctaataggtacctccattgcggaaatttttttttggaggtcttaaaagatcca 14729079  T
Q  415 tgatctaagttaagaccctcattattaagtggacccacgtaactttttattaaaataataattctcatggcttttaa 491  Q
       ||||| ||||||||| |||| |||| ||| ||||| | ||||||||||||||||||| || |||||||| ||||    
T  14729078 atgtctaacttaagacccccattcttaaatgggcccacatcactttttattaaaataatatttttcatggctattaa 14729002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 8644258 - 8644316
Alignment:
Q  315 cctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  8644258 cctaagagcatctacaatggtgaggtcttcaccatttaagacctagtacctaataggta 8644316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 486 - 575
Target Start/End: Original strand, 24848896 - 24848987
Alignment:
Q  486 ttttaatcaatttaatattataaaatagat-ataatgttttaaacaaata-atattggtgggacccaattagacattttgttagaggatctc 575  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| |||||  ||||||||||||||  ||| || |||||||||||| ||||    
T  24848896 ttttaatcaatttaatattataaaatagataatagtgttttaaataaatagttattggtgggacccttttaaaccttttgttagagggtctc 24848987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 6106958 - 6107012
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  6106958 agagcatctacaatggtgaggtcttcaccatttaagacctagtacctaataggta 6107012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 44103982 - 44104036
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  44103982 agagcatccacattggtgaggtcttcaccatttaagacttggtacctaataggta 44104036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 576
Target Start/End: Complemental strand, 14729003 - 14728957
Alignment:
Q  530 aaataatattggtgggacccaattagacattttgttagaggatctct 576  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  14729003 aaataatatttgtgggaccctattagaccttttgttagaggatctct 14728957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 31511587 - 31511533
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||| ||||||||||| |||||||||||||||| || ||| ||||||||||    
T  31511587 agagcatctacaatggtgagatcttcaccatttaagatctagtacctaataggta 31511533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 571
Target Start/End: Complemental strand, 14581295 - 14581248
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagagga 571  Q
    ||||| ||||||||||||||||||||||||| || ||||| |||||||    
T  14581295 ttaaataaataatattggtgggacccaattaaaccttttgatagagga 14581248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 575
Target Start/End: Complemental strand, 38901321 - 38901271
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||| ||||    
T  38901321 ttaaataaataatattggtgggacccaattagac-tttttttagagggtctc 38901271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 40678818 - 40678872
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||||||| ||||| | |||||||||||||| || ||| ||||||||||    
T  40678818 agagcatccacaatagtgagttattcaccatttaagatctagtacctaataggta 40678872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 7206831 - 7206888
Alignment:
Q  316 ctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||| || ||||||  ||||||||||| ||||||||||| ||| ||||||||||    
T  7206831 ctaagagcctctacaatgacgaggtcttcactatttaagacctagtacctaataggta 7206888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 67767 - 67711
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||| ||| | ||||||||||| ||||||||||||||||| |||  |||||||||    
T  67767 taagagtatctataatggtgaggttttcaccatttaagacctagtagttaataggta 67711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 40229854 - 40229798
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||| |||||||| | |||||||||||||||||  |  |||||||||||||    
T  40229854 taagagcatctacaatggtaaagtcttcaccatttaagatttaatatctaataggta 40229798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 8434008 - 8433944
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||    
T  8434008 agagcatccacaatggtgaggtcttcaccatttaagacctggtacctaataggtacccccattgt 8433944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 15635868 - 15635811
Alignment:
Q  316 ctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  15635868 ctaagagcatccacaatggtgaggtcttcaccatttaagacctagtacctaataggta 15635811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 314 - 373
Target Start/End: Complemental strand, 9784866 - 9784807
Alignment:
Q  314 ccctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  9784866 cccttagagcatccacaatggtgaggtcttcaccatttaagacctagtacctaataggta 9784807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 13542482 - 13542425
Alignment:
Q  316 ctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13542482 ctaagagcattcacaatggtgaggtcttcaccatttaagacctagtacctaataggta 13542425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 606681 - 606625
Alignment:
Q  314 ccctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaatag 370  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  606681 cccttagagcatccacaatggtgaggtcttcaccatttaagacctagtacctaatag 606625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 19495273 - 19495219
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  19495273 agagcatctacaatggtgaggtcttcaccatttaagacctagtacctaataggta 19495219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 524 - 575
Target Start/End: Complemental strand, 33207588 - 33207537
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||| ||||    
T  33207588 ttaaataaataatattggtgggacccaattagaccttttgttagagggtctc 33207537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 4277505 - 4277438
Alignment:
Q  506 taaaatagatataatgttttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||||||||||  ||| ||||| ||||||||||| |||||||||||||||| |||||||||||| ||||    
T  4277505 taaaatagatat--tgtattaaataaataatattgatgggacccaattagaccttttgttagagggtctc 4277438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 14090017 - 14089963
Alignment:
Q  329 caatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||    
T  14090017 caatggtgaggtcttcaccatttaagacctagtacctaataggtacttccattgt 14089963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 2552273 - 2552325
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaata 369  Q
    |||||||||||||| ||||||||||||||||||||||||| || || ||||||    
T  2552273 taagagcatccacattggtgaggtcttcaccatttaagacttgatacctaata 2552325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 32273887 - 32273831
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||| ||||| | ||||||||||||||||||||||||||| ||| ||||||||||    
T  32273887 taagagtatccatattggtgaggtcttcaccatttaagacctagtacctaataggta 32273831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 524 - 576
Target Start/End: Original strand, 32534855 - 32534907
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctct 576  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  32534855 ttaaataaataatattggtggaaccaaattagacattttgttagagggtctct 32534907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 28837839 - 28837891
Alignment:
Q  321 agcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||||| || | |||||||| ||||||||||| ||||||||||||||    
T  28837839 agcatccacaatagtaatgtcttcacaatttaagacctagtatctaataggta 28837891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 477
Target Start/End: Complemental strand, 8433927 - 8433848
Alignment:
Q  399 ggtcttaaaagatccatgatctaagttaagaccct-cattattaagtggacccacgtaactttttattaaaataataatt 477  Q
    |||||||||||||||| | ||||| |||||| ||| |||| |||| ||| | ||| | ||||||||||||||||||||||    
T  8433927 ggtcttaaaagatccaaggtctaacttaagatccttcattcttaaatgggctcacatcactttttattaaaataataatt 8433848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 383
Target Start/End: Original strand, 30471598 - 30471665
Alignment:
Q  316 ctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||||| || |||||||||||||||||| || |||||||| | |||| ||| |||||| |||||||||    
T  30471598 ctaagaccaaccacaatggtgaggtcttaacaatttaagatccggtacctattaggtacctccattgt 30471665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 33495000 - 33494941
Alignment:
Q  324 atccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||||||||||||||||||| ||||||||||||| | || ||| |||||| | |||||||    
T  33495000 atccacaatggtgaggtcttaaccatttaagacccgatacctattaggtacccccattgt 33494941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 39324158 - 39324113
Alignment:
Q  530 aaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||||||||||||||| |||||||||| |||||||| ||| ||||    
T  39324158 aaataatattggtgggatccaattagaccttttgttatagggtctc 39324113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 15072399 - 15072335
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||||||| ||||||||||| |||||| |||||||||||| ||  ||||||| ||  ||||||||    
T  15072399 agagcatctacaatggtgagatcttcatcatttaagacctagtgcctaatagatacttccattgt 15072335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 10202 - 10138
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||||||||||||||| |||||||||||||||||||| ||| || ||||||||||||||||||||    
T  10202 agagcatccacaatggcgaggtcttcaccatttaagatctgatacctaataggtatctccattgt 10138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 19512736 - 19512800
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||||||||||||||| |||||||||||||||||||| ||| || ||||||||||||||||||||    
T  19512736 agagcatccacaatggcgaggtcttcaccatttaagatctgatacctaataggtatctccattgt 19512800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 32827108 - 32827172
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||  ||||||||    
T  32827108 agagcatccaccatggtgaggtcttcaccatttaagacctagtatctaatatgtacttccattgt 32827172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 319 - 491
Target Start/End: Original strand, 5300278 - 5300448
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt--agannnnnnnnnngaggtcttaaaagatccatg 416  Q
    |||||||||||||||||||||||||||| ||  ||||||| ||| |||||||||| |||||||||  | |          ||||||||||||||| || |    
T  5300278 agagcatccacaatggtgaggtcttcacaat--aagaccttgtacctaataggta-ctccattgtgaaaaaaaaaaattggaggtcttaaaagatacaag 5300374  T
Q  417 atctaagttaagaccctcattattaagtggacccacgtaactttttattaaaataataattctcatggcttttaa 491  Q
     ||||| ||||||||| |||| |||| ||| | ||| | |||||||||||||||||||||| |||||||| ||||    
T  5300375 gtctaacttaagaccc-cattcttaaatgggctcacatcactttttattaaaataataattttcatggctattaa 5300448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 524 - 570
Target Start/End: Original strand, 44415923 - 44415969
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagagg 570  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  44415923 ttaaataaataatattggtgggacccaattagacattttgttagagg 44415969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 7712487 - 7712434
Alignment:
Q  329 caatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattg 382  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||    
T  7712487 caatggtgaggtcatcaccatttaaaacctggtatctaataggtacctccattg 7712434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 524 - 575
Target Start/End: Original strand, 23740111 - 23740162
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  23740111 ttaaataaataatattggtgggacccaattagacattttgttacagggtctc 23740162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 530 - 576
Target Start/End: Complemental strand, 45467747 - 45467701
Alignment:
Q  530 aaataatattggtgggacccaattagacattttgttagaggatctct 576  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  45467747 aaataatatttgtgggaccctattagacattttgttagaggatctct 45467701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 401 - 491
Target Start/End: Complemental strand, 45467835 - 45467746
Alignment:
Q  401 tcttaaaagatccatgatctaagttaagaccctcattattaagtggacccacgtaactttttattaaaataataattctcatggcttttaa 491  Q
    ||||||||||||||  |||||| ||||||||| | || |||| |||| |||| | |||||||||||||||||||||| |||||||| ||||    
T  45467835 tcttaaaagatccaatatctaacttaagaccccctttcttaaatggatccacatcactttttattaaaataataatt-tcatggctattaa 45467746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 46592196 - 46592246
Alignment:
Q  324 atccacaatggtgaggtcttcaccatttaagacctggtatctaataggtat 374  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  46592196 atccacaatggtgaggttttcaccatttaagatttggtatctaataggtat 46592246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 524 - 576
Target Start/End: Original strand, 23625133 - 23625185
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctct 576  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||||| |||||    
T  23625133 ttaaataaataatattggtgggatccaattagaccttttgttagagggtctct 23625185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 31206600 - 31206544
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    ||||| |||||||| ||||||||||||| |||||||||||||| || ||||||||||    
T  31206600 taagaccatccacattggtgaggtcttccccatttaagacctgttacctaataggta 31206544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 33259708 - 33259648
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||||||||||||||||||||||||||||||||| | || | |||||||| | |||||||    
T  33259708 catccacaatggtgaggtcttcaccatttaagacccgataccaaataggtacccccattgt 33259648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 33279867 - 33279807
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||||||||||||||||||||||||||||||||| | || | |||||||| | |||||||    
T  33279867 catccacaatggtgaggtcttcaccatttaagacccgataccaaataggtacccccattgt 33279807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 491
Target Start/End: Complemental strand, 38865515 - 38865463
Alignment:
Q  439 ttaagtggacccacgtaactttttattaaaataataattctcatggcttttaa 491  Q
    |||||||||||||| | |||||||||||||||||||||| |||||||| ||||    
T  38865515 ttaagtggacccacatcactttttattaaaataataattttcatggctattaa 38865463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 524 - 575
Target Start/End: Original strand, 31636496 - 31636547
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||| ||||    
T  31636496 ttaaataaatagtattggtgggacccaattagactttttgttagagggtctc 31636547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 524 - 575
Target Start/End: Complemental strand, 44573967 - 44573916
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| ||||||||||| ||||||||||||| || |||||||||||||||||    
T  44573967 ttaaataaataatattgttgggacccaattaaaccttttgttagaggatctc 44573916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 6704407 - 6704358
Alignment:
Q  334 gtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||||||||||| |||||||||||| |||||||||||||  ||||||||    
T  6704407 gtgaggtcttcactatttaagacctgatatctaataggtacttccattgt 6704358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 14479726 - 14479681
Alignment:
Q  330 aatggtgaggtcttcaccatttaagacctggtatctaataggtatc 375  Q
    ||||||||||| || ||||||||||||| |||||||||||||||||    
T  14479726 aatggtgaggtattaaccatttaagacccggtatctaataggtatc 14479681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 38865464 - 38865419
Alignment:
Q  530 aaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    |||||||||| ||||||||| ||||||| |||||||||||||||||    
T  38865464 aaataatatttgtgggaccctattagaccttttgttagaggatctc 38865419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 42400864 - 42400917
Alignment:
Q  329 caatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattg 382  Q
    ||||||||||||||||| ||||||||||| |||| |||||||||| | ||||||    
T  42400864 caatggtgaggtcttcatcatttaagacccggtacctaataggtacccccattg 42400917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 574
Target Start/End: Original strand, 5300447 - 5300491
Alignment:
Q  530 aaataatattggtgggacccaattagacattttgttagaggatct 574  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  5300447 aaataatatttgtgggaccctattagaccttttgttagaggatct 5300491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 576
Target Start/End: Original strand, 50270763 - 50270814
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctct 576  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||||| |||||    
T  50270763 ttaaataaataat-ttggtgggacccaattagaccttttgttagagggtctct 50270814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 35615727 - 35615769
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggt 361  Q
    |||||| ||||||||||||||||||||| ||| ||||||||||    
T  35615727 agagcacccacaatggtgaggtcttcacgattgaagacctggt 35615769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 576
Target Start/End: Complemental strand, 14396072 - 14396020
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctct 576  Q
    ||||| ||||||||||||||| || |||||| || |||||||||||| |||||    
T  14396072 ttaaataaataatattggtggaactcaattaaaccttttgttagagggtctct 14396020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 373
Target Start/End: Complemental strand, 33727168 - 33727116
Alignment:
Q  321 agcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    ||||| ||||||||||| ||||||||||||||| || | ||| ||||||||||    
T  33727168 agcattcacaatggtgaagtcttcaccatttaaaacatagtacctaataggta 33727116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 319 - 491
Target Start/End: Complemental strand, 46209274 - 46209100
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt---agannnnnnnnnngaggtcttaaaagatccat 415  Q
    ||||||||||||||||||| || || | |||||||||||| ||||||||||| |||||| |||||   |||          | ||||||||||||||||     
T  46209274 agagcatccacaatggtgaagttttaatcatttaagacctcgtatctaatagatatctctattgtggaagaaaaaaaattaggggtcttaaaagatccaa 46209175  T
Q  416 gatctaagttaagaccctcattattaagtggacccacgtaactttttattaaaataataattctcatggcttttaa 491  Q
    | ||||| |||||||| ||||| |||| |||| |||| | |||||||||||||||||||||| |||| ||| ||||    
T  46209174 ggtctaatttaagacc-tcattcttaaatggatccacatcactttttattaaaataataattttcatagctattaa 46209100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 5355759 - 5355827
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgtag 385  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  5355759 taagagcatccacaatcgtgagatcttcaccatttaagacctagtaactaataggtacttccattgtag 5355827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 29629203 - 29629259
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    ||||||| |||||||||||||||||||||||||||||||| || || ||| ||||||    
T  29629203 taagagcgtccacaatggtgaggtcttcaccatttaagacatgatacctattaggta 29629259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 17604093 - 17604027
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||| ||||||||||||||||||||| |||||||||||   |||  |||||||||| |||||||||    
T  17604093 taagaccatccacaatggtgaggtcttaaccatttaagattcggtgcctaataggtacctccattgt 17604027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 570
Target Start/End: Original strand, 33987784 - 33987830
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagagg 570  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||||    
T  33987784 ttaaataaataatattagtgggatccaattagacattttgttagagg 33987830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 46209101 - 46209056
Alignment:
Q  530 aaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    |||||||||| ||||||||| ||||||| |||||||||||||||||    
T  46209101 aaataatatttgtgggaccctattagaccttttgttagaggatctc 46209056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 34967766 - 34967830
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||||||| |||||||||||||||  | |||||||||| | ||| ||||||||||| ||||||||    
T  34967766 agagcatctacaatggtgaggtctatatcatttaagacttagtacctaataggtatttccattgt 34967830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 575
Target Start/End: Original strand, 27816478 - 27816529
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| ||||||||||  ||||||| ||||||||||||||||||||| ||||    
T  27816478 ttaaataaataatattaatgggacctaattagacattttgttagagggtctc 27816529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 575
Target Start/End: Complemental strand, 41003460 - 41003409
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| |||||||||||||||||| ||||||||  |||||||||||| ||||    
T  41003460 ttaaataaataatattggtgggactcaattagatcttttgttagagggtctc 41003409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 25796068 - 25796034
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacc 357  Q
    ||||||||||||||||||||| |||||||||||||    
T  25796068 catccacaatggtgaggtcttaaccatttaagacc 25796034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 516
Target Start/End: Original strand, 30224679 - 30224709
Alignment:
Q  486 ttttaatcaatttaatattataaaatagata 516  Q
    |||||||||||||||||||||||||||||||    
T  30224679 ttttaatcaatttaatattataaaatagata 30224709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 42252085 - 42252139
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||| | ||||||||||||||||||||||||||  | ||| ||||||||||    
T  42252085 agagcatctataatggtgaggtcttcaccatttaagatatagtacctaataggta 42252139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 42710743 - 42710693
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||||||||| | || |||||||||||||||||| ||| ||||||    
T  42710743 catccacaatggtgagattttaaccatttaagacctggtacctattaggta 42710693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 9487082 - 9487030
Alignment:
Q  329 caatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattg 382  Q
    |||| |||| ||||||| ||||||||||| ||||||||||||||| ||||||||    
T  9487082 caattgtgaagtcttcatcatttaagacc-ggtatctaataggtacctccattg 9487030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 10249122 - 10249077
Alignment:
Q  530 aaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||||||||  |||||||| ||||||| |||||||||||||||||    
T  10249122 aaataatatttttgggaccctattagaccttttgttagaggatctc 10249077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 33987592 - 33987656
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||||||||||||||    ||||| | ||||||||| ||||||||||||| ||| |||||||||    
T  33987592 agagcatccacaatggaatagtcttaaacatttaagatctggtatctaatacgtacctccattgt 33987656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 47841666 - 47841606
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||||||||||||  |||||| || |||||||| | ||||||||||||||| | |||||||    
T  47841666 catccacaatggtacggtcttaactatttaagatccggtatctaataggtagccccattgt 47841606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 31153652 - 31153598
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  31153652 agagcatccacaatggtgaggtcttcaccatttaagacctagtacctaataggta 31153598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 383
Target Start/End: Original strand, 49615597 - 49615663
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||    
T  49615597 taagagcatctacaatggtgaggtcttcaccatttaagacctagtacctaataggtacttccattgt 49615663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 376951 - 377010
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattg 382  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||||    
T  376951 catcctcaatggtgaggtcttcaccatttaagacctagtatctaataggtaccttcattg 377010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 524 - 575
Target Start/End: Original strand, 4489489 - 4489540
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  4489489 ttaaataaataatattggtgggacccaattagacattttgttagagggtctc 4489540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 28963517 - 28963575
Alignment:
Q  315 cctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  28963517 cctaagagcatctacaatggtgagatcttcaccatttaagacctagtacctaataggta 28963575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 7885807 - 7885866
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattg 382  Q
    ||||| ||||||||||||||||||||||||||||| | || |||||||||| ||||||||    
T  7885807 catccccaatggtgaggtcttcaccatttaagacccgatacctaataggtacctccattg 7885866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 516 - 575
Target Start/End: Original strand, 52669731 - 52669790
Alignment:
Q  516 ataatgttttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||||| ||||| ||||||||||||||||||||||||| || |||||||||||| ||||    
T  52669731 ataatgtattaaataaataatattggtgggacccaattaaaccttttgttagagggtctc 52669790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 7932622 - 7932568
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||    
T  7932622 agagcatctacaatagtgaggtcttcaccatttaagacctagtacctaataggta 7932568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 42760870 - 42760817
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggt 372  Q
    ||||||||||||||||||||||||||| ||||||| | || |||||||||||||    
T  42760870 agagcatccacaatggtgaggtcttcatcatttaaaatctagtatctaataggt 42760817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 530 - 575
Target Start/End: Original strand, 47968090 - 47968135
Alignment:
Q  530 aaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  47968090 aaataatatttgtgggaccctattagacattttgttagaggatctc 47968135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 3432752 - 3432812
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    |||| ||||||||||||||||||||||||||||||| |||  |||||||||  ||||||||    
T  3432752 catctacaatggtgaggtcttcaccatttaagacctagtacataataggtacttccattgt 3432812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 491
Target Start/End: Original strand, 47968001 - 47968091
Alignment:
Q  400 gtcttaaaagatccatgatctaagttaagaccctcattattaagtggacccacgtaactttttattaaaataataattctcatggcttttaa 491  Q
    ||||||||||||| | | ||||| ||||||||| |||| |||| ||| ||||| | || ||||||||||||||||||| |||||||| ||||    
T  47968001 gtcttaaaagatcaagg-tctaacttaagacccccattcttaaatgggcccacatcacattttattaaaataataattttcatggctattaa 47968091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 52120252 - 52120210
Alignment:
Q  337 aggtcttcaccatttaagacctggtatctaataggtatctcca 379  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  52120252 aggtcttcaccatttaagacctgatatctaataggtacctcca 52120210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 570
Target Start/End: Complemental strand, 14476957 - 14476917
Alignment:
Q  530 aaataatattggtgggacccaattagacattttgttagagg 570  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  14476957 aaataatattggtgggacctaattagaccttttgttagagg 14476917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 45707488 - 45707540
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatc 375  Q
    ||||| ||||||||||||||||||||||||||| | |||| ||||||| ||||    
T  45707488 catcctcaatggtgaggtcttcaccatttaagatccggtacctaatagatatc 45707540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 51305704 - 51305752
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaa 367  Q
    |||||||| |||||| |||||||||||||||||||||||| ||| ||||    
T  51305704 agagcatctacaatgatgaggtcttcaccatttaagacctagtacctaa 51305752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 477
Target Start/End: Complemental strand, 14477150 - 14476991
Alignment:
Q  319 agagcatccacaatggtgag-gtcttcaccatttaagacctggtatctaataggtatctccattgtagannnnnnnnnnga-ggtcttaaaagatccatg 416  Q
    |||||||||||||||| ||| ||||||| ||||||||||| |||| |||||| ||||| ||||||| ||          || ||||||||||||| || |    
T  14477150 agagcatccacaatgg-gagagtcttcaacatttaagacccggtacctaatatgtatccccattgtggaaaaataaattgagggtcttaaaagatgcaag 14477052  T
Q  417 atctaagttaagaccctcattattaagtggacccacgt-aactttttattaaaataataatt 477  Q
     ||||| |||||| ||||||| |||| ||| ||||| | | |||||||||||||||||||||    
T  14477051 gtctaaattaaga-cctcattcttaaatgggcccacatcatctttttattaaaataataatt 14476991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 575
Target Start/End: Original strand, 22909403 - 22909454
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| |||||||||||||||||||||||||| | ||||| |||||| ||||    
T  22909403 ttaaataaataatattggtgggacccaattaggccttttgctagagggtctc 22909454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 362
Target Start/End: Original strand, 53143392 - 53143431
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacctggta 362  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  53143392 catccacaatggtgaggtcttaaccatttaagacatggta 53143431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 350
Target Start/End: Original strand, 47967948 - 47967982
Alignment:
Q  316 ctaagagcatccacaatggtgaggtcttcaccatt 350  Q
    ||||||||||||||||||||||| |||||||||||    
T  47967948 ctaagagcatccacaatggtgagatcttcaccatt 47967982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 38138510 - 38138453
Alignment:
Q  316 ctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    ||||||||||| ||| ||||  |||||| ||||||||||||| | |||||||||||||    
T  38138510 ctaagagcatcgacattggtagggtctttaccatttaagacccgatatctaataggta 38138453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 5552625 - 5552571
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  5552625 agagcatctacaatggtgaggtcttcaccatttaagacctagtacctaataggta 5552571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 9976894 - 9976844
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaata 369  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  9976894 agagcatccacaatggtgaggtcttcaccatttaagatttggtatctaata 9976844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 9707544 - 9707488
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||| ||||||||||    
T  9707544 taagagcatcaagaatggtgaggtcttcaccatttaagacctagtacctaataggta 9707488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 12392284 - 12392228
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||    
T  12392284 taagagcatccataatggtgaggtcttccccatttaagacctagtacctaataggta 12392228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 44277533 - 44277586
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  44277533 agagcatccacaatggtgag-tcttcaccatttaagacctagtacctaataggta 44277586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 372
Target Start/End: Complemental strand, 449439 - 449384
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggt 372  Q
    |||||||||||||  ||||||||||||||||| ||||||  |||||||||||||||    
T  449439 taagagcatccacgttggtgaggtcttcaccaattaagatatggtatctaataggt 449384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 449324 - 449270
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    ||||||| |||  |||| |||||||||||||||||||||||||| ||||||||||    
T  449324 agagcatacacggtggtaaggtcttcaccatttaagacctggtacctaataggta 449270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 11915735 - 11915792
Alignment:
Q  322 gcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctcca 379  Q
    ||||||| | |||||||||||||||||||||| ||||| ||  |||||||||||||||    
T  11915735 gcatccatattggtgaggtcttcaccatttaaaacctgatacttaataggtatctcca 11915792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 43301804 - 43301857
Alignment:
Q  320 gagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    ||||||||||| |||||||||||||| ||||||||||||  || ||||||||||    
T  43301804 gagcatccacattggtgaggtcttcatcatttaagaccttatacctaataggta 43301857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 42056526 - 42056474
Alignment:
Q  330 aatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattg 382  Q
    |||||||||||||| ||||||||| ||||||||  |||||||||||| |||||    
T  42056526 aatggtgaggtcttaaccatttaaaacctggtagttaataggtatcttcattg 42056474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 16118169 - 16118118
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaagacctggtatctaataggtat 374  Q
    ||||| ||||||||||||||||||||||||||| | ||||  ||||||||||    
T  16118169 catccccaatggtgaggtcttcaccatttaagatccggtacataataggtat 16118118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 575
Target Start/End: Original strand, 11915926 - 11916016
Alignment:
Q  486 ttttaatcaatttaatattataaaatagatataatgttttaaacaaata-atattggtgggacccaattagacattttgttagaggatctc 575  Q
    |||| ||||||||||||||||||||||||||   ||| ||||| |||||  ||| ||||| |||||  ||||| |||||||||||| ||||    
T  11915926 ttttgatcaatttaatattataaaatagataatgtgtcttaaataaatagttatcggtggaacccatatagaccttttgttagagggtctc 11916016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 18379707 - 18379756
Alignment:
Q  333 ggtgaggtcttcaccatttaagacctggtatctaataggtatctccattg 382  Q
    ||||| ||||||||||||||| ||| |||| |||||||||| ||||||||    
T  18379707 ggtgaagtcttcaccatttaaaacccggtacctaataggtacctccattg 18379756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 477
Target Start/End: Complemental strand, 449242 - 449167
Alignment:
Q  401 tcttaaaagatccatgatctaagttaagaccctcattattaagtggacccacgtaactttttattaaaataataatt 477  Q
    |||||||||||||| | ||||| ||||||||| |||| |||| |||   ||| | ||||||||||||||||||||||    
T  449242 tcttaaaagatccaaggtctaacttaagaccc-cattcttaaatgggttcacatcactttttattaaaataataatt 449167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 16341804 - 16341836
Alignment:
Q  323 catccacaatggtgaggtcttcaccatttaaga 355  Q
    ||||| |||||||||||||||||||||||||||    
T  16341804 catccccaatggtgaggtcttcaccatttaaga 16341836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 516 - 575
Target Start/End: Complemental strand, 29383534 - 29383475
Alignment:
Q  516 ataatgttttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||||| ||||| |||||||||| |||||| |||||||||| |||||||||||||||||    
T  29383534 ataatgtattaaataaataatatttgtgggatccaattagaccttttgttagaggatctc 29383475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 6794178 - 6794114
Alignment:
Q  319 agagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||||||||||||||   |||||| | |||||||||||||||| |||||||||||| |||||||    
T  6794178 agagcatccacaatgggagggtcttaaacatttaagacctggtacctaataggtatccccattgt 6794114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 531 - 570
Target Start/End: Complemental strand, 6793987 - 6793948
Alignment:
Q  531 aataatattggtgggacccaattagacattttgttagagg 570  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  6793987 aataatattggtgggacccaattagaccttttgttagagg 6793948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 11703432 - 11703366
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattgt 383  Q
    ||||| ||||||||||||||||||||| ||||| ||||||| |||| ||| |||||| | |||||||    
T  11703432 taagaccatccacaatggtgaggtcttaaccatgtaagacccggtacctattaggtacccccattgt 11703366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 317 - 382
Target Start/End: Complemental strand, 31632598 - 31632533
Alignment:
Q  317 taagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggtatctccattg 382  Q
    ||||| ||||| ||||||||||||||||| |||||||||||  |||  ||||||||| ||||||||    
T  31632598 taagaccatcctcaatggtgaggtcttcatcatttaagacccagtacttaataggtacctccattg 31632533  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 575
Target Start/End: Original strand, 378597 - 378648
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| |||||||||||| ||||| ||||||||| |||||||||||| ||||    
T  378597 ttaaataaataatattggcgggactcaattagaccttttgttagagggtctc 378648  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 373
Target Start/End: Complemental strand, 32025922 - 32025886
Alignment:
Q  337 aggtcttcaccatttaagacctggtatctaataggta 373  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  32025922 aggtcttcaccatttaagacctagtacctaataggta 32025886  T

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Target: scaffold0110 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 524 - 576
Target Start/End: Complemental strand, 26829 - 26777
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctct 576  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||||| |||||    
T  26829 ttaaataaataatattggtgagacccaattagaccttttgttagagggtctct 26777  T

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Target: scaffold1114 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 524 - 575
Target Start/End: Original strand, 2331 - 2382
Alignment:
Q  524 ttaaacaaataatattggtgggacccaattagacattttgttagaggatctc 575  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||||| ||||    
T  2331 ttaaataaataatattggtgcgacccaattagaccttttgttagagggtctc 2382  T

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Target: scaffold0154 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 26796 - 26853
Alignment:
Q  316 ctaagagcatccacaatggtgaggtcttcaccatttaagacctggtatctaataggta 373  Q
    ||||||||||| |||||||||||||||||| ||||||||| ||  ||| |||||||||    
T  26796 ctaagagcatctacaatggtgaggtcttcatcatttaagatctaatatttaataggta 26853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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