View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0628_low_4 (Length: 583)
Name: NF0628_low_4
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0628_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 148 - 556
Target Start/End: Original strand, 34033852 - 34034252
Alignment:
| Q |
148 |
ctgttctgtaatttgttctgaaagcacatgatcataaactgaacatttagactcagatggggaatttagctcacagtcatcggcaaatactttggcgcct |
247 |
Q |
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| T |
34033852 |
ctgttctgtaatttgttctgaaagcacatgatcataaactgaacatttagactcagatggggaatttagctcacagtcatcggcaaatactttggcgcct |
34033951 |
T |
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| Q |
248 |
tgatatgaatcagatccgagactagtagttgccggggatgagactaattttgagaatccttgaggagagcttttgaagtttgtcttgtattcattatcct |
347 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033952 |
tgatatgaatcagatccaagactagtagttgccggggatgagactaattttgagaatccttgaggagagcttttgaagtttgtcttgtattcattatcct |
34034051 |
T |
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| Q |
348 |
cgtgttgaactccaaatgaatgatcattgcatgnnnnnnntgacaccccttgtttacttggatattcctcggacaccatagttgatgagttccatttcaa |
447 |
Q |
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| T |
34034052 |
cgtgttgaactccaaatgaatgatcattgcatgaaaaaaatgacaccccttgtttacttggatattcctcggacaccatagttgatgagttccatttcaa |
34034151 |
T |
|
| Q |
448 |
cggggcactggttggcctatagtaatcaatcaatcacaagaaaaatattaaaatactaacatttgtcatttaaaaacaaccgttctccaacttcatcaat |
547 |
Q |
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| T |
34034152 |
cggggcactggttggcctatagt--------aatcacaagaaaaatattaacatactaacatttgtcatttaaaaacaacggttctccaacttcatcaat |
34034243 |
T |
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| Q |
548 |
ctctgctcc |
556 |
Q |
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||||||||| |
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| T |
34034244 |
ctctgctcc |
34034252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 34033730 - 34033799
Alignment:
| Q |
26 |
gcttcatcgatgtctgacgcttcacaatcttcccttctgaggctggagttaatttctatgacataagagc |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033730 |
gcttcatcgatgtctgacgcttcacaatcttcccttctgaggctggagttaatttctatgacataagagc |
34033799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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