View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0628_low_5 (Length: 581)
Name: NF0628_low_5
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0628_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 32326657 - 32326167
Alignment:
| Q |
1 |
tctgaaaactctgaaacccatgaaacctctgccatacccaccattgtctcaacaacagaaaacaagcttgttgttctaaatgctggatctcagctttaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32326657 |
tctgaaaactctgaaacccatgaaacctctgtcatacccaccattgtctcaacaacagaaaacaaacttgttgttctaaatgctggatctcagctttaca |
32326558 |
T |
|
| Q |
101 |
acaagttggatggcgacaactatccagcttggcacatccaatttttcgcccttctcacaggatttgacctgatgggctatgtagatggcactaacttgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32326557 |
tcaagttggatggcgacaactatccagcttggcgcatccaatttttcgcccttctcacaggatttgacctgataggctatgtagatggcactaacttgtg |
32326458 |
T |
|
| Q |
201 |
tccatctaaaatgttggagaatgaaacctccaaaatcaaccctgcatacactcattgggtaagacaagaccaacttatccttcatggtgttgtatcgtca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32326457 |
tccatctaaaatgttggagaatgaaacctccaaaatcaaccctgcatacactcattgggtaagacaagaccaacttatccttcatggtgttgtatcgtca |
32326358 |
T |
|
| Q |
301 |
gtagctgcaactgttgtcactcacattggcacagttaaaacctccaaagaagcttgggacactctccaaaccatgtatgctggccggtcccgtgtccgca |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32326357 |
gtagctgcaactgttgtcactcaccttggcacagttaaaacctccaaagaagcttgggacactctccaaaccatgtatgctggccggtcccgtgtccgca |
32326258 |
T |
|
| Q |
401 |
taatggcactcaagcagaaaatctccacattcacaaaaggagaaaaaactatggcaaactaccttcaaggaatcaaagccatttctgatga |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32326257 |
taatggcactcaagcagaaaatctccacattcacaaaaggagacaaacctatggcaaactaccttcaaggaatcaaagccatttctgatga |
32326167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 18731693 - 18731203
Alignment:
| Q |
1 |
tctgaaaactctgaaacccatgaaacctctgccatacccaccattgtctcaacaacagaaaacaagcttgttgttctaaatgctggatctcagctttaca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18731693 |
tctgaaaactctgaaactcatgaaacctctgccatacccaccattgtctcaacaacagaaaacaaacttgttgttctaaatgctggatctcagctttaca |
18731594 |
T |
|
| Q |
101 |
acaagttggatggcgacaactatccagcttggcacatccaatttttcgcccttctcacaggatttgacctgatgggctatgtagatggcactaacttgtg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18731593 |
tcaagctggatggcgacaactatccagcttggcacatccaatttttcgcccttctcacaggatttgacctgttgggctatgtagatggcactaacttgtg |
18731494 |
T |
|
| Q |
201 |
tccatctaaaatgttggagaatgaaacctccaaaatcaaccctgcatacactcattgggtaagacaagaccaacttatccttcatggtgttgtatcgtca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18731493 |
tccatctaaaatgttggagaatgaaacctccaaaatcaaccctgcatacactcattgggtaagacaagaccaacttatccttcatggtgttgtatcgtca |
18731394 |
T |
|
| Q |
301 |
gtagctgcaactgttgtcactcacattggcacagttaaaacctccaaagaagcttgggacactctccaaaccatgtatgctggccggtcccgtgtccgca |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
18731393 |
gtagctgcaactgttgtcactcaccttggcacatttaaaacctccaaagaagcttgggacactctccaaaccatgtatgttggccggtcccgtgtccgca |
18731294 |
T |
|
| Q |
401 |
taatggcactcaagcagaaaatctccacattcacaaaaggagaaaaaactatggcaaactaccttcaaggaatcaaagccatttctgatga |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
18731293 |
taatggcactcaagcagaaaatctccacattcacaaaaggaacaaaaactatggcaaactaccttcaagtaatcaaagccatttctgatga |
18731203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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