View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0628_low_7 (Length: 554)

Name: NF0628_low_7
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0628_low_7
NF0628_low_7
[»] chr8 (12 HSPs)
chr8 (134-554)||(3782975-3783387)
chr8 (87-135)||(5689590-5689637)
chr8 (87-133)||(17982976-17983021)
chr8 (95-133)||(19945158-19945196)
chr8 (87-133)||(44304178-44304224)
chr8 (87-134)||(30143663-30143709)
chr8 (87-133)||(1746018-1746064)
chr8 (87-133)||(4731981-4732026)
chr8 (87-133)||(6599288-6599333)
chr8 (87-133)||(6674741-6674786)
chr8 (96-133)||(2628071-2628108)
chr8 (87-131)||(41366420-41366463)
[»] chr2 (11 HSPs)
chr2 (352-554)||(37915076-37915275)
chr2 (87-134)||(36205463-36205510)
chr2 (96-133)||(32289900-32289937)
chr2 (87-133)||(723547-723592)
chr2 (87-133)||(2334218-2334263)
chr2 (87-133)||(24885908-24885953)
chr2 (87-133)||(34139573-34139618)
chr2 (87-133)||(36773881-36773926)
chr2 (87-133)||(36987875-36987920)
chr2 (177-243)||(37961253-37961319)
chr2 (87-133)||(42362668-42362713)
[»] chr6 (9 HSPs)
chr6 (87-133)||(16452127-16452173)
chr6 (87-135)||(22963506-22963554)
chr6 (87-135)||(23824839-23824887)
chr6 (87-133)||(2171326-2171372)
chr6 (87-133)||(5406002-5406048)
chr6 (87-133)||(5408869-5408915)
chr6 (87-133)||(5410327-5410373)
chr6 (87-133)||(5413194-5413240)
chr6 (87-133)||(26954091-26954136)
[»] chr4 (7 HSPs)
chr4 (87-133)||(5369881-5369927)
chr4 (87-133)||(29999628-29999674)
chr4 (87-133)||(48143371-48143417)
chr4 (87-133)||(54199708-54199753)
chr4 (87-133)||(45686987-45687032)
chr4 (87-133)||(48893443-48893488)
chr4 (87-131)||(56178438-56178481)
[»] chr3 (10 HSPs)
chr3 (87-133)||(9635923-9635969)
chr3 (89-133)||(9634621-9634665)
chr3 (87-133)||(19683687-19683733)
chr3 (87-133)||(5236257-5236302)
chr3 (87-133)||(5257943-5257989)
chr3 (87-133)||(9581606-9581652)
chr3 (87-133)||(22834807-22834852)
chr3 (87-133)||(31314763-31314808)
chr3 (87-133)||(40734820-40734865)
chr3 (89-133)||(9666270-9666313)
[»] chr1 (6 HSPs)
chr1 (87-133)||(20762991-20763037)
chr1 (87-133)||(833970-834015)
chr1 (87-133)||(8550584-8550629)
chr1 (99-133)||(13316151-13316185)
chr1 (87-133)||(37503362-37503407)
chr1 (88-133)||(40122001-40122045)
[»] chr7 (4 HSPs)
chr7 (87-133)||(29991376-29991422)
chr7 (87-133)||(35854239-35854285)
chr7 (87-133)||(38671025-38671070)
chr7 (87-133)||(41648814-41648859)
[»] chr5 (7 HSPs)
chr5 (87-133)||(9789021-9789067)
chr5 (87-133)||(30182911-30182957)
chr5 (96-133)||(18441441-18441478)
chr5 (87-134)||(25413083-25413130)
chr5 (99-133)||(26178221-26178255)
chr5 (87-133)||(31183296-31183341)
chr5 (89-133)||(5887235-5887278)
[»] scaffold1519 (1 HSPs)
scaffold1519 (87-133)||(1239-1285)
[»] scaffold0286 (1 HSPs)
scaffold0286 (87-133)||(11889-11935)
[»] scaffold0002 (1 HSPs)
scaffold0002 (87-133)||(434857-434903)


Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 134 - 554
Target Start/End: Original strand, 3782975 - 3783387
Alignment:
Q  134 tcttccaatcttataattccttcacattccgaaaatgctccctcttatatacgctacctcaatggagactttctctccttcaccgttgctgaatccttag 233  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  3782975 tcttccaatcttataattccttcacattccgaaaatgttcccccttatatacgctacctcaatggagactctctctccttcaccattgctgaatccttag 3783074  T
Q  234 caaacttcaacctccttatttcagattcttcacaagatgttaaaaatttgcacccnnnnnnnnnnnctttccgaacttgccttctcctcatactgaacac 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||    
T  3783075 caaacttcaacctccttatttcagattcttcacaagatgttaaaaatttgcaccctttt--------tttccgaacttgccttctcctcatactgaacac 3783166  T
Q  334 aatgacacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctagattcgctatctgcctcacgtttaaccacattgcaggtgatg 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3783167 aatgacacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctggattcgctatctgcctcacgtttaaccacattgcaggtgatg 3783266  T
Q  434 gaaaatcacttcaccaattcatgaaattctggtcttatgtttccaaaaccaaaaccatcaacaacagtttatctctagaacactctctgcctcttgatct 533  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3783267 gaaaatcacttcaccaattcatgaaactctggtcatatgtttccaaaaccaaaaccatcaacaacagattatctctagaacactctctgcctcttgatct 3783366  T
Q  534 tcttccttcacatgaaagaga 554  Q
    |||||||||||||||||||||    
T  3783367 tcttccttcacatgaaagaga 3783387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 5689590 - 5689637
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaacatc 135  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  5689590 acatcatagtttgtattggtgtgattttgag-tcggaattcacaacatc 5689637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 17982976 - 17983021
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  17982976 acatcatagtttgtattggtgtga-tttgagatcggaattcacaaca 17983021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 19945196 - 19945158
Alignment:
Q  95 gtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  19945196 gtttgtattggtgtgattttgagaccggaattcacaaca 19945158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 44304178 - 44304224
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||    
T  44304178 acatcatagtatgtattggtgtgattttgagaacggaattcacaaca 44304224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 30143663 - 30143709
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaacat 134  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||||    
T  30143663 acatcatagtttgtattggtgtgattttgag-tctgaattcacaacat 30143709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 1746064 - 1746018
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||| |||||||||||||||||||| || |||||||||||    
T  1746064 acatcatagttcgtattggtgtgattttgagaccgaaattcacaaca 1746018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 4731981 - 4732026
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  4731981 acatcattgtttgtattggtgtgattttgagttc-gaattcacaaca 4732026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 6599288 - 6599333
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  6599288 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 6599333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 6674741 - 6674786
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  6674741 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 6674786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 2628071 - 2628108
Alignment:
Q  96 tttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  2628071 tttgtattggtgtggtttcgagatcggaattcacaaca 2628108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 41366463 - 41366420
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaa 131  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||    
T  41366463 acatcatagtttgtattggtgtgattttgag-tccgaattcacaa 41366420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 352 - 554
Target Start/End: Original strand, 37915076 - 37915275
Alignment:
Q  352 cctctaatggccattcaagtcaccattctacctaactctagattcgctatctgcctcacgtttaaccacattgcaggtgatggaaaatcacttcaccaat 451  Q
    ||||| |||||||||||| |||||||||||||||||||| | ||| |||| || ||| ||||||| ||| |||  |  || |||||||||||||| || |    
T  37915076 cctctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatt 37915175  T
Q  452 tcatgaaattctggtcttatgtttccaaaaccaaaaccatcaacaacagtttatctctagaacactctctgcctcttgatcttcttccttcacatgaaag 551  Q
    |||||||||| ||| | | |||||||||| | | ||| | |||||||   || ||||| ||| |||||| |||||||||   ||||||||| ||||||||    
T  37915176 tcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctccgcctcttga---tcttccttcccatgaaag 37915272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 36205510 - 36205463
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaacat 134  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  36205510 acatcatagtttgtattagtgtgattttgagaccggaattcacaacat 36205463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 32289900 - 32289937
Alignment:
Q  96 tttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||||||||| |||||||||||||||||||||||    
T  32289900 tttgtattggtgtggttttgagatcggaattcacaaca 32289937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 723592 - 723547
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  723592 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 723547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 2334263 - 2334218
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  2334263 acatcatagtttgtattggtgtgattttgag-tctgaattcacaaca 2334218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 24885908 - 24885953
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  24885908 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 24885953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 34139618 - 34139573
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  34139618 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 34139573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 36773881 - 36773926
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  36773881 acatcatagtttgtattggtgtgattttga-atccgaattcacaaca 36773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 36987920 - 36987875
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  36987920 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 36987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 37961319 - 37961253
Alignment:
Q  177 cttatatacgctacctcaatggagactttctctccttcaccgttgctgaatccttagcaaacttcaa 243  Q
    |||| ||||| |||||| ||| ||||| | ||||||||||||| |||||||||| |||| |||||||    
T  37961319 cttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaa 37961253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 42362668 - 42362713
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  42362668 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 42362713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 16452173 - 16452127
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  16452173 acatcatagttcgtattggtgtgattttgagatcggaattcacaaca 16452127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 22963554 - 22963506
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaacatc 135  Q
    ||||||| |||||||||||||||||||||||   |||||||||||||||    
T  22963554 acatcatagtttgtattggtgtgattttgagtctggaattcacaacatc 22963506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 23824839 - 23824887
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaacatc 135  Q
    ||||||| |||||||||||||||||||||||   |||||||||||||||    
T  23824839 acatcatagtttgtattggtgtgattttgagtctggaattcacaacatc 23824887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 2171372 - 2171326
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||| |||||||||||| ||||||| ||||||||||||||    
T  2171372 acatcatagttcgtattggtgtgactttgagaccggaattcacaaca 2171326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 5406048 - 5406002
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||| ||| ||| ||||||||||||||    
T  5406048 acatcatagtttgtattggtgtgactttaagaccggaattcacaaca 5406002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 5408915 - 5408869
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||| |||||||  |||||||||||||    
T  5408915 acatcatagtttgtattggtgtgactttgagactggaattcacaaca 5408869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 5410373 - 5410327
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||| ||| ||| ||||||||||||||    
T  5410373 acatcatagtttgtattggtgtgactttaagaccggaattcacaaca 5410327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 5413240 - 5413194
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||| |||||||  |||||||||||||    
T  5413240 acatcatagtttgtattggtgtgactttgagactggaattcacaaca 5413194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 26954136 - 26954091
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  26954136 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 26954091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 5369927 - 5369881
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  5369927 acatcatagtttgtattggtgtgattttgagaccggaattcacaaca 5369881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 29999674 - 29999628
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  29999674 acatcatagtttgtattggtgtgattttgagaccggaattcacaaca 29999628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 48143371 - 48143417
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||    
T  48143371 acatcatagtttgtattggtgtgattttgagtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 54199753 - 54199708
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||    
T  54199753 acatcatcgtttgtattggtgtgattttgag-tccgaattcacaaca 54199708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 45687032 - 45686987
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  45687032 acatcatagtttgtattggtgtgattttgag-tctgaattcacaaca 45686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 48893488 - 48893443
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  48893488 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 48893443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 56178481 - 56178438
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaa 131  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||    
T  56178481 acatcatagtttgtattggtgtgattttgag-tccgaattcacaa 56178438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 9635969 - 9635923
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  9635969 acatcatagtttgtattggtgtgattttgagaccggaattcacaaca 9635923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 9634665 - 9634621
Alignment:
Q  89 atcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||    
T  9634665 atcatagtttgtattggtgtgattttgagaccggaattcacaaca 9634621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 19683733 - 19683687
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||    
T  19683733 acatcatagtttgtattggtgtgagtttgagaccggaattcacaaca 19683687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 5236302 - 5236257
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  5236302 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 5236257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 5257989 - 5257943
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||| |||||||||||| ||||||| ||||||||||||||    
T  5257989 acatcatagttcgtattggtgtgactttgagaccggaattcacaaca 5257943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 9581606 - 9581652
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||| ||||||||||||||||||  ||||||||||||||    
T  9581606 acatcatagtttatattggtgtgattttgagtccggaattcacaaca 9581652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 22834852 - 22834807
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  22834852 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 22834807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 31314763 - 31314808
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  31314763 acatcatagtttgtattggtgtgattttgag-tcggtattcacaaca 31314808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 40734820 - 40734865
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||    
T  40734820 acatcatagtttgtattggtgtgattttgaga-ccgaattcacaaca 40734865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 9666313 - 9666270
Alignment:
Q  89 atcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||    
T  9666313 atcatagtttgtattggtgtgattttgag-tccgaattcacaaca 9666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 20762991 - 20763037
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  20762991 acatcatagtttgtattggtgtgattttgagaccggaattcacaaca 20763037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 834015 - 833970
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  834015 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 8550629 - 8550584
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  8550629 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 8550584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 13316185 - 13316151
Alignment:
Q  99 gtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||||||||||||||| ||||||||||||||    
T  13316185 gtattggtgtgattttgagaccggaattcacaaca 13316151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 37503407 - 37503362
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  37503407 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 37503362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 40122045 - 40122001
Alignment:
Q  88 catcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||| ||||||||||||||||||||||| || ||||||||||||    
T  40122045 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 40122001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 29991376 - 29991422
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||    
T  29991376 acatcatagtttgtattggtgtgactttgagaacggaattcacaaca 29991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 35854239 - 35854285
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||| ||||||||||||||  |||||||||||||    
T  35854239 acatcatagtttgtatttgtgtgattttgagactggaattcacaaca 35854285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 38671070 - 38671025
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  38671070 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 38671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 41648859 - 41648814
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  41648859 acatcatagtttgtattggtgtgattttgag-tccgaattcacaaca 41648814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 9789067 - 9789021
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||  |||||||||||||| |||||||||||||||||||||||    
T  9789067 acatcatactttgtattggtgtggttttgagatcggaattcacaaca 9789021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 30182911 - 30182957
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||    
T  30182911 acatcatagtttgttttggtgtgattttgagaccggaattcacaaca 30182957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 18441478 - 18441441
Alignment:
Q  96 tttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||||||||| |||||||||||||||||||||||    
T  18441478 tttgtattggtgtggttttgagatcggaattcacaaca 18441441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 25413083 - 25413130
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaacat 134  Q
    ||||||| ||| |||||||||||||||||| | |||||||||||||||    
T  25413083 acatcatagttcgtattggtgtgattttgaaaccggaattcacaacat 25413130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 26178221 - 26178255
Alignment:
Q  99 gtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||||||| |||||||||||||||||||||||    
T  26178221 gtattggtgtggttttgagatcggaattcacaaca 26178255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 31183296 - 31183341
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  31183296 acatcatggtttgtattggtgtgattttgag-tccgaattcacaaca 31183341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 5887278 - 5887235
Alignment:
Q  89 atcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||    
T  5887278 atcatagtttgtattggtgtgattttgag-tccgaattcacaaca 5887235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 1239 - 1285
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||| |||||||||||| ||||||| ||||||||||||||    
T  1239 acatcatagttcgtattggtgtgactttgagaccggaattcacaaca 1285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 11889 - 11935
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||| |||||||||||| ||||||| ||||||||||||||    
T  11889 acatcatagttcgtattggtgtgactttgagaccggaattcacaaca 11935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 434857 - 434903
Alignment:
Q  87 acatcatcgtttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||| |||||||||||| ||||||| ||||||||||||||    
T  434857 acatcatagttcgtattggtgtgactttgagaacggaattcacaaca 434903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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