View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0628_low_9 (Length: 509)
Name: NF0628_low_9
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0628_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 124 - 499
Target Start/End: Original strand, 34033363 - 34033737
Alignment:
| Q |
124 |
aacaaacatgagataaaaacatgaggtagcttgcttttgtctctttctgtcaacaaaatttgttaacctttgagaatttttatctgtgtagcatcaacac |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033363 |
aacaaacatgagataaaaacatgaggtagcttgcttttgtctctttc-gtcaacaaaatttgttaacctttgagaatttttatctgtgtagcatcaacac |
34033461 |
T |
|
| Q |
224 |
ttcagatcgaaggtgtgtcccgtatttgacactgacacaagcagttacattacattaattgattttcattttcttaaactattacgagtatctatgtgtc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033462 |
ttcagatcgaaggtgtgtcccgtatttgacactgacacaagcagttacattacattaattgattttcattttcttaaactattacgagtatctatgtgtc |
34033561 |
T |
|
| Q |
324 |
tgtattagtgttgtgttcagtgtttgtgtgagtgcttcttaattttttactatcagttaagataatcaatcaccttgcattttaaaagtctgttcattgc |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34033562 |
tgtattagtgttgtgttcagtgtttgtgtgagtgcttcttaattttttactatcagttaagataatcaatcaccttgcattttaacagtctgttcattgc |
34033661 |
T |
|
| Q |
424 |
catcatatctcattcttgacttttcatcagggcttcttgattgaaacttctctttggcccatgcaattgcttcatc |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033662 |
catcatatctcattcttgacttttcatcagggcttcttgattgaaacttctctttggcccatgcaattgcttcatc |
34033737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 462 - 499
Target Start/End: Complemental strand, 22360965 - 22360928
Alignment:
| Q |
462 |
gattgaaacttctctttggcccatgcaattgcttcatc |
499 |
Q |
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||||||||||||||||||||||||||||| |||||||| |
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| T |
22360965 |
gattgaaacttctctttggcccatgcaatcgcttcatc |
22360928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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