View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0629_high_3 (Length: 251)
Name: NF0629_high_3
Description: NF0629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0629_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36876344 - 36876105
Alignment:
| Q |
1 |
aatctttctctgttacaaactttattgaagcaattgaaactaataaaattactccatactttgttgattcattgtggagtttgaagggattaacttgtct |
100 |
Q |
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| T |
36876344 |
aatctttctctgttacaaactttattgaagcaattgaaactaataaaattactccatactttgttgattcattgtggagtttgaagggattaacttgtct |
36876245 |
T |
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| Q |
101 |
tgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttgacgctcttcctttgaccaaacttgttctccatggttgcttccattat |
200 |
Q |
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| T |
36876244 |
tgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttgacgctcttcctttgaccaaacttgttctccatggttgcttccattat |
36876145 |
T |
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| Q |
201 |
acatattataggatctatcgtctgttgtcaaagtcttcat |
240 |
Q |
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| T |
36876144 |
acatattataggatctatcgtctgttgtcaaagtcttcat |
36876105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 36810368 - 36810557
Alignment:
| Q |
27 |
gaagcaattgaaactaataaaattactccatactttgttgattcattgtggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctg |
126 |
Q |
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| T |
36810368 |
gaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcatgatttgtctttttcatgcatttctg |
36810467 |
T |
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| Q |
127 |
atttcttgctttgctctctagcacttgacgctcttcctttgaccaaacttgttctccatggttgcttccattatacatattataggatct |
216 |
Q |
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| T |
36810468 |
atttcttgctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatct |
36810557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 218
Target Start/End: Original strand, 27005133 - 27005309
Alignment:
| Q |
42 |
aataaaattactccatactttgttgattcattgtggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgct |
141 |
Q |
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|||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||| ||| | ||||||||| || ||||||||| |
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| T |
27005133 |
aataaaattactccatacttcgttgattcattcgggactttgaagggattaacttgtcttgatttctctttctcacgtatttctgatctcatgctttgct |
27005232 |
T |
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| Q |
142 |
ctctagcacttgacgctcttcctttgaccaaacttgttctccatggttgcttccattatacatattataggatctat |
218 |
Q |
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| T |
27005233 |
ctttagcacttgaatctcttcctctaaacaaactcgttctccatggttgtttggattatacatattatggtatctat |
27005309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 33708406 - 33708544
Alignment:
| Q |
64 |
ttgattcattgtggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttgacgctcttcc |
163 |
Q |
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| T |
33708406 |
ttgattcattgatgagtttgaagcgcttaacttgtcttgatttgtcctattcatgcattactgattcgttgctttactctctaacacttgcagctcttcc |
33708505 |
T |
|
| Q |
164 |
tttgaccaaacttgttctccatggttgcttccattatac |
202 |
Q |
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| T |
33708506 |
tttgaggaaacttgtcctccaaggtcgctgccaatatac |
33708544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 33714272 - 33714361
Alignment:
| Q |
64 |
ttgattcattgtggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttg |
153 |
Q |
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| T |
33714272 |
ttgattcattggtgagtttaaagcgcttaacttgtcttgatttgtcctattcatgcattactgattcgttgctttactctctagcacttg |
33714361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 33397227 - 33397108
Alignment:
| Q |
64 |
ttgattcattgtggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttgacgctcttcc |
163 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||| |||| ||||||||| ||||||||||| |||||||| |
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| T |
33397227 |
ttgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcacttgaagctcttcc |
33397128 |
T |
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| Q |
164 |
tttgaccaaacttgttctcc |
183 |
Q |
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| T |
33397127 |
tttgaggaaacttgtcctcc |
33397108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 18723716 - 18723839
Alignment:
| Q |
55 |
catactttgttgattcattgtggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttga |
154 |
Q |
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| T |
18723716 |
catacttcattgattcattggcgagtttgaagcgcttaacttgtcttgaccagtccttttcatgcattactgatttcttgctttgctctctagcacttga |
18723815 |
T |
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| Q |
155 |
cgctcttcctttgaccaaacttgt |
178 |
Q |
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| T |
18723816 |
agctcttcctttgagcaaacttgt |
18723839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 3438040 - 3438081
Alignment:
| Q |
77 |
gagtttgaagggattaacttgtcttgatttgtctttttcatg |
118 |
Q |
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| T |
3438040 |
gagtctgaagggattaacttgtcttgatttgtcgtcttcatg |
3438081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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