View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0629_low_1 (Length: 721)
Name: NF0629_low_1
Description: NF0629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0629_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 608; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 48 - 691
Target Start/End: Complemental strand, 42393841 - 42393198
Alignment:
Q |
48 |
gcggcatatggtttatttaactctgattcaaattaaaatttatttgagaatgctaacatgtgccctaaggcacgtgttgaagaacttaataccattgagt |
147 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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T |
42393841 |
gcggtatatggtttgtttaactctgattcaaattaaaatttatttgagaatgctaacatgtgccctaaggcgtgcgttgaagaacttaataccattgagt |
42393742 |
T |
 |
Q |
148 |
ttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaaaccaggagtaatgagga |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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T |
42393741 |
ttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgaatttgcaatggcagaaatgatgaacaaaccaggagtaatgagga |
42393642 |
T |
 |
Q |
248 |
aggttcaagaggaattagaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaac |
347 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
42393641 |
aggttcaagaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaac |
42393542 |
T |
 |
Q |
348 |
ccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgttt |
447 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
42393541 |
ccttcgtttgcacccatcacttccacttctaatgtctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgttt |
42393442 |
T |
 |
Q |
448 |
gtgaacgtttgggctattcatagagacccttccatttgggagaaaccgttagaatttgatccgacaaggttcttggatggtaaatgggattataaaggga |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
42393441 |
gtgaacgtttgggctattcatagagacccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattataaaggga |
42393342 |
T |
 |
Q |
548 |
atgacttcaattatttcccctttggttctggaagaaggatatgtgctggaatagcaatggctgagaggaatgttttgtactttatagccacccttatgca |
647 |
Q |
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T |
42393341 |
atgacttcaattatttcccctttggttctggaagaaggatatgtgctggaatagcaatggctgagaggaatgttttgtactttatagccacccttatgca |
42393242 |
T |
 |
Q |
648 |
ctcgtttgattggacaatacctcaaggagaaaagttggatgtat |
691 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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T |
42393241 |
ctcgtttgattggacaatacctcaaggagaaaagttggatgtat |
42393198 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 155 - 680
Target Start/End: Complemental strand, 42377182 - 42376657
Alignment:
Q |
155 |
aacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaaaccaggagtaatgaggaaggttca |
254 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
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T |
42377182 |
aacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatggcagaaatgatgaacaaaccagaagtgatgaggaaggttca |
42377083 |
T |
 |
Q |
255 |
agaggaattagaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgt |
354 |
Q |
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|||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||| |||||| |
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T |
42377082 |
agaggagttagaaactgtggttggaaaagataacttagtagaagagtctcatattcacaagctaacctacttacatgcagtgatgaaagaaactcttcgt |
42376983 |
T |
 |
Q |
355 |
ttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacg |
454 |
Q |
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|| ||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| ||| | |||| |
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T |
42376982 |
ttacaccctgcacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtctttatcaacg |
42376883 |
T |
 |
Q |
455 |
tttgggctattcatagagacccttccatttgggagaaaccgttagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgactt |
554 |
Q |
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|||||||||||||||||||||||| |||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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T |
42376882 |
tttgggctattcatagagacccttatgtttgggagaacccactagaatttgatcctacaaggttcttggatggtaaatgggattatagtgggaatgactt |
42376783 |
T |
 |
Q |
555 |
caattatttcccctttggttctggaagaaggatatgtgctggaatagcaatggctgagaggaatgttttgtactttatagccacccttatgcactcgttt |
654 |
Q |
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||| |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| ||||||||||| |||||| |||| |
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T |
42376782 |
caactatttcccttttggctctggaagaaggatttgtgccggaatagcaatggctgagaggacggttttgtactttgtagccacccttgtgcacttgttt |
42376683 |
T |
 |
Q |
655 |
gattggacaatacctcaaggagaaaa |
680 |
Q |
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||||||||| | |||||||||||||| |
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T |
42376682 |
gattggacagttcctcaaggagaaaa |
42376657 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 146 - 458
Target Start/End: Complemental strand, 42387539 - 42387228
Alignment:
Q |
146 |
gtttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaaaccaggagtaatgag |
245 |
Q |
|
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|||| |||||||||||||||||| | ||||||||||||||||||||||| || ||||||||| ||| ||| |||||||| |||| |||| ||||||||| |
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T |
42387539 |
gtttatatgaacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatagcataaatgatggacaa-ccagaagtaatgag |
42387441 |
T |
 |
Q |
246 |
gaaggttcaagaggaattagaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaa |
345 |
Q |
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|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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T |
42387440 |
gaaggttcaagaggaactggaaatcgtggttgggaaagataacttagtagaagagtctcatattcaaaagctaccctacttgcaagcagtaatgaaagaa |
42387341 |
T |
 |
Q |
346 |
acccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgt |
445 |
Q |
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|||||||||||||||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| | |
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T |
42387340 |
acccttcgtttgcacccaacacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtct |
42387241 |
T |
 |
Q |
446 |
ttgtgaacgtttg |
458 |
Q |
|
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|| | |||||||| |
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|
T |
42387240 |
ttatcaacgtttg |
42387228 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 513 - 692
Target Start/End: Complemental strand, 42387220 - 42387041
Alignment:
Q |
513 |
aaggttcttggatggtaaatgggattataaagggaatgacttcaattatttcccctttggttctggaagaaggatatgtgctggaatagcaatggctgag |
612 |
Q |
|
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||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||||||||| ||||| |
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T |
42387220 |
aaggttcttggatggtaaatgggattatagtgggaatgacttcaactatttcccttttggctctggaagaaggatttgtgccggaatagcaatgtctgag |
42387121 |
T |
 |
Q |
613 |
aggaatgttttgtactttatagccacccttatgcactcgtttgattggacaatacctcaaggagaaaagttggatgtatc |
692 |
Q |
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|||| |||||||||||| ||||||||||| |||||| ||||||||||||| | |||||||||||||| |||||||||| |
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T |
42387120 |
aggacggttttgtactttgtagccacccttgtgcacttgtttgattggacagttcctcaaggagaaaatatggatgtatc |
42387041 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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