View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0629_low_10 (Length: 251)

Name: NF0629_low_10
Description: NF0629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0629_low_10
NF0629_low_10
[»] chr2 (11 HSPs)
chr2 (30-251)||(5592935-5593153)
chr2 (91-251)||(5573198-5573358)
chr2 (30-233)||(5586717-5586920)
chr2 (30-216)||(5576313-5576499)
chr2 (30-216)||(5582483-5582668)
chr2 (94-216)||(12059434-12059556)
chr2 (112-214)||(12064822-12064924)
chr2 (122-206)||(5558827-5558911)
chr2 (112-216)||(12052033-12052137)
chr2 (122-189)||(5568505-5568572)
chr2 (113-186)||(12076017-12076090)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 5593153 - 5592935
Alignment:
Q  30 tttttctttgttcttttctcttgttaccttcaactcttgattcagcttaaactatgaacttcttttgattgcagctcagttacttggttttgagaaattc 129  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  5593153 tttttctttgttcttttctcttgttaccttaaacttttgattcagcttaaactatgaacttctt---attgcagctcagttacttggttttgagaaattc 5593057  T
Q  130 attccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcgtatggagacatactcggctaagg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5593056 attccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcgtatggagacatactcggctaagg 5592957  T
Q  230 tttaaattagtttttagtagat 251  Q
    ||||||||||||||||||||||    
T  5592956 tttaaattagtttttagtagat 5592935  T

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Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 91 - 251
Target Start/End: Complemental strand, 5573358 - 5573198
Alignment:
Q  91 cttttgattgcagctcagttacttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctg 190  Q
    |||||||||||||||||  | ||||| |||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||    
T  5573358 cttttgattgcagctcaacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctg 5573259  T
Q  191 gcggagctggaattcgtatggagacatactcggctaaggtttaaattagtttttagtagat 251  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5573258 gcggagctggaattcgtatggagacatactcagctaaggtttaaattagtttttagtagat 5573198  T

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Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 5586920 - 5586717
Alignment:
Q  30 tttttctttgttcttttctcttgttaccttcaactcttgattcagcttaaactatgaacttcttttgattgcagctcagttacttggttttgagaaattc 129  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| || || ||||||||| ||||||| | ||||| |||||||| |||    
T  5586920 tttttctttgttcttttctcttgttaccttaaacttttgattcagctcaaactataaagttattttgattgtagctcagcttcttggctttgagaacttc 5586821  T
Q  130 attccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcgtatggagacatactcggctaagg 229  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||  ||||||  |  ||||||||    
T  5586820 attccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactacgcatctggcgcagctggaattcgtaccgagacaagcatggctaagg 5586721  T
Q  230 ttta 233  Q
    ||||    
T  5586720 ttta 5586717  T

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Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 5576499 - 5576313
Alignment:
Q  30 tttttctttgttcttttctcttgttaccttcaactcttgattcagcttaaactatgaacttcttttgattgcagctcagttacttggttttgagaaattc 129  Q
    |||||| || ||||||||||||||||| || | || ||||||||||| ||||| | || ||||||| |||||||||||| | ||||||||||||||||||    
T  5576499 tttttcattattcttttctcttgttacattaatcttttgattcagctcaaactgtaaagttctttttattgcagctcagcttcttggttttgagaaattc 5576400  T
Q  130 attccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcgtatggagaca 216  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||    
T  5576399 attccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgtatcgagaca 5576313  T

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Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 5582668 - 5582483
Alignment:
Q  30 tttttctttgttcttttctcttgttaccttcaactcttgattcagcttaaactatgaacttcttttg-attgcagctcagttacttggttttgagaaatt 128  Q
    |||||| ||||||||||||||| |||  || | || ||||||||||| ||||||| || || ||||  |||||||||||| | |||| ||||||||| ||    
T  5582668 tttttcattgttcttttctcttcttat-ttaagcttttgattcagctcaaactataaagttattttttattgcagctcagcttcttg-ttttgagaactt 5582571  T
Q  129 cattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcgtatggagaca 216  Q
    ||||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||| | ||||||||||||||| | ||||||    
T  5582570 cattctaccatttgcaaacattagtggttcagacatactctaaggtgtgaactatgcatctcgtggagctggaattcgtgtcgagaca 5582483  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 12059434 - 12059556
Alignment:
Q  94 ttgattgcagctcagttacttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcg 193  Q
    ||||||||||||||  |  |||| ||| |||||||||||||| ||||||| |||| |||||||||||||||||||| || ||||||||||||||| |  |    
T  12059434 ttgattgcagctcaccttgttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcagagatgtgaactatgcatcagagg 12059533  T
Q  194 gagctggaattcgtatggagaca 216  Q
    |||| |||||| |||| ||||||    
T  12059534 gagcaggaatttgtatcgagaca 12059556  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 12064822 - 12064924
Alignment:
Q  112 cttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcgtatgg 211  Q
    ||||| ||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||| |||||| |||||||| |  ||||| |||||| |||| |    
T  12064822 cttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcaaagatgtgaaatatgcatccgagggagcgggaatttgtatcg 12064921  T
Q  212 aga 214  Q
    |||    
T  12064922 aga 12064924  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 5558911 - 5558827
Alignment:
Q  122 agaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcg 206  Q
    |||||||||| ||||| ||||| |||| || ||||||||| ||||| |||||||| |||||||||||||| | ||||||||||||    
T  5558911 agaaattcatcccaccctttgcaaacactattggttcagatatacttaaaggtgttaactatgcatctggtgcagctggaattcg 5558827  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 12052033 - 12052137
Alignment:
Q  112 cttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcgtatgg 211  Q
    ||||| ||| ||| |||||||||| ||||||| |||| |||||||| ||| || |||||||||||||| ||||||| ||  ||||| ||||||||||| |    
T  12052033 cttggattttagatattcattccatcatttgcaaacactaatggtttagatattctcaaaggtgtgaattatgcatatgagggagcaggaattcgtatcg 12052132  T
Q  212 agaca 216  Q
    |||||    
T  12052133 agaca 12052137  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 5568572 - 5568505
Alignment:
Q  122 agaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatct 189  Q
    |||| ||||| ||||||||||| |||| || ||| |||| |||||| |||||||| ||||||||||||    
T  5568572 agaatttcatcccaccatttgcaaacaatattggctcaggcatacttaaaggtgttaactatgcatct 5568505  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 12076017 - 12076090
Alignment:
Q  113 ttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgca 186  Q
    |||| ||||||||||| ||| || ||||||| |||  |||||||| ||||||| | |||||| |||||||||||    
T  12076017 ttggatttgagaaattaatttcatcatttgcaaaccctaatggtttagacatatttaaaggtctgaactatgca 12076090  T

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