View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0629_low_12 (Length: 201)
Name: NF0629_low_12
Description: NF0629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0629_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 21123643 - 21123480
Alignment:
| Q |
20 |
tcaaatgttaaatgccataaatccgaggaatccaatgatttacgagcacttatatttagcaatagcattttaagatttggagcatgcaattgacnnnnnn |
119 |
Q |
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| T |
21123643 |
tcaaatgttaaatgcgataaatccaaggaattcaatgatggacgagcacttatatttagcaatagcattttaagattaggagcatgcaatggacaaaaaa |
21123544 |
T |
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| Q |
120 |
ngggattttcattctcccaccatgaagatactgcaaaacaatctcttatatttttatcttctgc |
183 |
Q |
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| T |
21123543 |
agggatttttattctcccaccatgaagatactgcaaaacaatctcttatatttttatcttctgc |
21123480 |
T |
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Target: chr3; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 21116216 - 21116053
Alignment:
| Q |
20 |
tcaaatgttaaatgccataaatccgaggaatccaatgatttacgagcacttatatttagcaatagcattttaagatttggagcatgcaattgacnnnnnn |
119 |
Q |
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|||||||||||||| |||||||| || ||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
21116216 |
tcaaatgttaaatgtgataaatccaagaaattcaatgattcacgagcacttatatttaccaataacattttaagatttggagcatgcaattgacaaaagg |
21116117 |
T |
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| Q |
120 |
ngggattttcattctcccaccatgaagatactgcaaaacaatctcttatatttttatcttctgc |
183 |
Q |
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|||||||||||| | ||||||||| |||| || |||||| |||||||| || ||||| ||||| |
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| T |
21116116 |
tgggattttcattataccaccatgaggataatgtaaaacattctcttattttgttatcctctgc |
21116053 |
T |
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