View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0629_low_4 (Length: 491)
Name: NF0629_low_4
Description: NF0629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0629_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 29 - 435
Target Start/End: Original strand, 43473377 - 43473783
Alignment:
| Q |
29 |
aataagagtagtactttgatatccatgcctggtttgaaacactctgtggtagtgattccttttccttatatcctttctttgttgtatcttctttgcctct |
128 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43473377 |
aataagaggagtgctttgatatccatgcctggtttgaaacactctgtggtagtgattctttttccttatatcctttctttgttgtatcttctttgcctct |
43473476 |
T |
|
| Q |
129 |
tacattgtttttctatgttcatgaatcataatactatttccattcaatgtgctagtttggaaggtctacttcagctgttggagtcaccaagagctgcaca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43473477 |
tacattgtttttctatgttcatgaatcataatactatttccattcaatgtgctagtttggaaggtctacttcagctgttggagtcaccaagagctgcaca |
43473576 |
T |
|
| Q |
229 |
tttgaggcaccattgtaagtctcaacctatgtagcaccgacatttcaaataaaaggagcattctgtatctgacacgtgtcagtctttgatatcaacacta |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43473577 |
tttgaggcaccattgtaagtctcaacctatgtagcaccgacatttcaaataaaaggagcattctgtatctgacacgtgtcagtctttgatatcaacacta |
43473676 |
T |
|
| Q |
329 |
acacatgtggttacattttcttaaaatattattatcgtcttcgtgtcaatatattgtctgatgctcttaaaatattactatcgtcttcgtgtcaatgcat |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43473677 |
acacatgtggttacattttcttaaaatattattatcgtcttcgtgtcaatatattgtctgatgctcttaaaatattactaccgtcttcgtgtcaatgcat |
43473776 |
T |
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| Q |
429 |
tgtctga |
435 |
Q |
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| T |
43473777 |
tgtctga |
43473783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 435 - 491
Target Start/End: Original strand, 43473902 - 43473958
Alignment:
| Q |
435 |
aaaccacggctgcggtgacaattgtgtcatgatacttgatatcgtgaataatcgcag |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43473902 |
aaaccacggctgcggtgacaattgtgtcatgatacttgatatcgtgaataatcgcag |
43473958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 43473741 - 43473786
Alignment:
| Q |
347 |
tcttaaaatattattatcgtcttcgtgtcaatatattgtctgatgc |
392 |
Q |
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||||||||||||| || ||||||||||||||| |||||||||||| |
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| T |
43473741 |
tcttaaaatattactaccgtcttcgtgtcaatgcattgtctgatgc |
43473786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 2081393 - 2081302
Alignment:
| Q |
170 |
attcaatgtgctagtttggaaggtctacttcagctgttggagtcaccaagagctgcacatttgaggcaccattgtaagtctcaacctatgta |
261 |
Q |
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|||| ||||||||||||||||||||||||| || ||||| | | |||||||| ||||| ||||||| | |||||||| ||||| ||||| |
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| T |
2081393 |
attctatgtgctagtttggaaggtctactttagttgttgcattaaccaagagtcacacatctgaggcatccatgtaagtcccaacccatgta |
2081302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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