View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0629_low_7 (Length: 327)
Name: NF0629_low_7
Description: NF0629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0629_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 28331943 - 28331736
Alignment:
| Q |
20 |
aatatatataaccaatggaaaggggaaaagcgatgaagatataaaccacctccctcaaaaacaaaatagccatgaaccaccaaacacttctactagtggt |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28331943 |
aatatatataaccaatggaaagggcaaaagcgat-aagatataaactacctccctcaaaaacaaaatagccatgaaccaccaaacacttctactagtggt |
28331845 |
T |
|
| Q |
120 |
tacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccaccagggccaaacccatttcccata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28331844 |
tacctttgcaagtgcaagcattctcatctttattattagaaaagttaaacaaacccaaaattccaccaagcttccaccagggccaaacccatttcccata |
28331745 |
T |
|
| Q |
220 |
attggaaac |
228 |
Q |
| |
|
||||||||| |
|
|
| T |
28331744 |
attggaaac |
28331736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 28321395 - 28321257
Alignment:
| Q |
90 |
catgaaccaccaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaag |
189 |
Q |
| |
|
|||| |||| |||||||||||||||||| || |||||| |||||||| |||||||||||| |||||||||||| || |||||||||||||| ||||| |
|
|
| T |
28321395 |
catggaccatcaaacacttctactagtgatttcctttgtaagtgcaaccattctcatcttcattcttagaaaatcaaaccaaacccaaaattctactaaa |
28321296 |
T |
|
| Q |
190 |
cttccaccagggccaaacccatttcccataattggaaac |
228 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
28321295 |
cttccaccagggccaaagccacttcccatcattggaaac |
28321257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 28297325 - 28297195
Alignment:
| Q |
98 |
accaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccacc |
197 |
Q |
| |
|
|||||||||||||||||||| |||||| | || ||| |||||||||||| |||||||||||| | | |||||||||||||| ||||| |||||||| |
|
|
| T |
28297325 |
accaaacacttctactagtgattacctctttgtgtacaaccattctcatcttcattcttagaaaattaatccaaacccaaaattctactaaacttccacc |
28297226 |
T |
|
| Q |
198 |
agggccaaacccatttcccataattggaaac |
228 |
Q |
| |
|
||||||| ||||| ||||||| || |||||| |
|
|
| T |
28297225 |
agggccatacccacttcccatcataggaaac |
28297195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 28287912 - 28288018
Alignment:
| Q |
122 |
cctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccaccagggccaaacccatttcccataat |
221 |
Q |
| |
|
|||||| |||||||||||| |||||| | |||||||||||| | || ||||| |||||||| || || ||||||||||||||||| ||| ||||||| || |
|
|
| T |
28287912 |
cctttgtaagtgcaagcatcctcatcctcattcttagaaaattaaaccaaactcaaaattctacaaaacttccaccagggccaaagccacttcccatcat |
28288011 |
T |
|
| Q |
222 |
tggaaac |
228 |
Q |
| |
|
|||||| |
|
|
| T |
28288012 |
aggaaac |
28288018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 28310813 - 28310683
Alignment:
| Q |
98 |
accaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccacc |
197 |
Q |
| |
|
|||||||||||||||| ||| |||||| | |||| |||||||||||||| ||| ||| |||| | || ||||| |||||||| || || |||||||| |
|
|
| T |
28310813 |
accaaacacttctactggtgattacctctttgtgtgcgagcattctcatcttcatttttaaaaaattaaaccaaactcaaaattctacaaaacttccacc |
28310714 |
T |
|
| Q |
198 |
agggccaaacccatttcccataattggaaac |
228 |
Q |
| |
|
||||||||| ||| ||||||| || |||||| |
|
|
| T |
28310713 |
agggccaaaaccacttcccatcataggaaac |
28310683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University