View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0630_low_1 (Length: 557)

Name: NF0630_low_1
Description: NF0630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0630_low_1
NF0630_low_1
[»] chr8 (15 HSPs)
chr8 (137-557)||(3782975-3783387)
chr8 (91-138)||(5689591-5689637)
chr8 (91-136)||(17982977-17983021)
chr8 (91-136)||(19945158-19945203)
chr8 (91-136)||(44304179-44304224)
chr8 (91-137)||(30143664-30143709)
chr8 (91-136)||(1746018-1746063)
chr8 (91-136)||(6599289-6599333)
chr8 (91-136)||(6674742-6674786)
chr8 (91-134)||(41366420-41366462)
chr8 (99-136)||(2628071-2628108)
chr8 (91-136)||(4731982-4732026)
chr8 (91-136)||(12702431-12702475)
chr8 (91-136)||(31218581-31218625)
chr8 (92-137)||(40321400-40321443)
[»] chr2 (17 HSPs)
chr2 (355-557)||(37915076-37915275)
chr2 (91-137)||(36205463-36205509)
chr2 (91-136)||(723547-723591)
chr2 (91-136)||(2334218-2334262)
chr2 (91-136)||(24885909-24885953)
chr2 (99-136)||(32289900-32289937)
chr2 (91-136)||(34139573-34139617)
chr2 (91-136)||(36773882-36773926)
chr2 (91-136)||(36987875-36987919)
chr2 (91-136)||(42362669-42362713)
chr2 (95-137)||(4502932-4502973)
chr2 (180-246)||(37961253-37961319)
chr2 (91-120)||(6594819-6594848)
chr2 (91-120)||(14633643-14633672)
chr2 (91-136)||(17057169-17057213)
chr2 (91-136)||(17085152-17085196)
chr2 (91-136)||(33162254-33162298)
[»] chr6 (11 HSPs)
chr6 (91-136)||(16452127-16452172)
chr6 (91-138)||(22963506-22963553)
chr6 (91-138)||(23824840-23824887)
chr6 (91-136)||(2171326-2171371)
chr6 (91-136)||(5406002-5406047)
chr6 (91-136)||(5408869-5408914)
chr6 (91-136)||(5410327-5410372)
chr6 (91-136)||(5413194-5413239)
chr6 (91-136)||(26954091-26954135)
chr6 (93-136)||(28137211-28137253)
chr6 (91-136)||(30834333-30834378)
[»] chr4 (12 HSPs)
chr4 (91-136)||(5369881-5369926)
chr4 (91-136)||(29999628-29999673)
chr4 (91-136)||(48143372-48143417)
chr4 (91-136)||(45686987-45687031)
chr4 (91-136)||(48893443-48893487)
chr4 (93-136)||(52095162-52095204)
chr4 (91-134)||(56178438-56178480)
chr4 (91-137)||(36463195-36463240)
chr4 (91-136)||(29254816-29254861)
chr4 (91-120)||(47038231-47038260)
chr4 (91-136)||(52082463-52082507)
chr4 (91-136)||(54199708-54199752)
[»] chr3 (13 HSPs)
chr3 (91-136)||(9635923-9635968)
chr3 (92-136)||(9634621-9634665)
chr3 (91-136)||(19683687-19683732)
chr3 (91-136)||(5236257-5236301)
chr3 (91-136)||(5257943-5257988)
chr3 (91-136)||(9581607-9581652)
chr3 (91-136)||(22834807-22834851)
chr3 (91-136)||(31314764-31314808)
chr3 (91-136)||(40734821-40734865)
chr3 (92-136)||(9666270-9666313)
chr3 (91-137)||(7764789-7764835)
chr3 (91-120)||(44700299-44700328)
chr3 (91-136)||(51399138-51399182)
[»] chr1 (11 HSPs)
chr1 (91-136)||(20762992-20763037)
chr1 (91-136)||(833970-834014)
chr1 (91-136)||(8550584-8550628)
chr1 (91-136)||(37503362-37503406)
chr1 (91-136)||(40122001-40122045)
chr1 (102-136)||(13316151-13316185)
chr1 (91-137)||(28265358-28265403)
chr1 (91-136)||(45644158-45644202)
chr1 (91-120)||(49918674-49918703)
chr1 (92-136)||(1833833-1833876)
chr1 (92-120)||(44455485-44455513)
[»] chr7 (6 HSPs)
chr7 (91-136)||(29991377-29991422)
chr7 (91-136)||(35854240-35854285)
chr7 (91-136)||(38671025-38671069)
chr7 (91-136)||(41648814-41648858)
chr7 (91-120)||(25616179-25616208)
chr7 (91-135)||(48489755-48489798)
[»] chr5 (9 HSPs)
chr5 (91-136)||(9789021-9789066)
chr5 (91-136)||(30182912-30182957)
chr5 (91-137)||(25413084-25413130)
chr5 (99-136)||(18441441-18441478)
chr5 (92-136)||(5887235-5887278)
chr5 (91-137)||(16649634-16649679)
chr5 (102-136)||(26178221-26178255)
chr5 (91-136)||(31183297-31183341)
chr5 (91-135)||(13240075-13240118)
[»] scaffold1519 (1 HSPs)
scaffold1519 (91-136)||(1240-1285)
[»] scaffold0286 (1 HSPs)
scaffold0286 (91-136)||(11890-11935)
[»] scaffold0002 (1 HSPs)
scaffold0002 (91-136)||(434858-434903)


Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 137 - 557
Target Start/End: Original strand, 3782975 - 3783387
Alignment:
Q  137 tcttccaatcttataattccttcacattccgaaaatgctccctcttatatacgctacctcaatggagactttctctccttcaccgttgctgaatccttag 236  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  3782975 tcttccaatcttataattccttcacattccgaaaatgttcccccttatatacgctacctcaatggagactctctctccttcaccattgctgaatccttag 3783074  T
Q  237 caaacttcaacctccttatttcagattcttcacaagatgttaaaaatttgcacccnnnnnnnnnnnctttccgaacttgccttctcctcatactgaacac 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||    
T  3783075 caaacttcaacctccttatttcagattcttcacaagatgttaaaaatttgcaccctttt--------tttccgaacttgccttctcctcatactgaacac 3783166  T
Q  337 aatgacacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctagattcgctatctgcctcacgtttaaccacattgcaggtgatg 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3783167 aatgacacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctggattcgctatctgcctcacgtttaaccacattgcaggtgatg 3783266  T
Q  437 gaaaatcacttcaccaattcatgaaattctggtcttatgtttccaaaaccaaaaccatcaacaacagtttatctctagaacactctctgcctcttgatct 536  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3783267 gaaaatcacttcaccaattcatgaaactctggtcatatgtttccaaaaccaaaaccatcaacaacagattatctctagaacactctctgcctcttgatct 3783366  T
Q  537 tcttccttcacatgaaagaga 557  Q
    |||||||||||||||||||||    
T  3783367 tcttccttcacatgaaagaga 3783387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 5689591 - 5689637
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaacatc 138  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  5689591 catcatagtttgtattggtgtgattttgag-tcggaattcacaacatc 5689637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 17982977 - 17983021
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  17982977 catcatagtttgtattggtgtga-tttgagatcggaattcacaaca 17983021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 19945203 - 19945158
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  19945203 catcaaagtttgtattggtgtgattttgagaccggaattcacaaca 19945158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 44304179 - 44304224
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  44304179 catcatagtatgtattggtgtgattttgagaacggaattcacaaca 44304224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 30143664 - 30143709
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 137  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  30143664 catcatagtttgtattggtgtgattttgag-tctgaattcacaacat 30143709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 1746063 - 1746018
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||| |||||||||||||||||||| || |||||||||||    
T  1746063 catcatagttcgtattggtgtgattttgagaccgaaattcacaaca 1746018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 6599289 - 6599333
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  6599289 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 6599333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 6674742 - 6674786
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  6674742 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 6674786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 41366462 - 41366420
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaa 134  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  41366462 catcatagtttgtattggtgtgattttgag-tccgaattcacaa 41366420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 2628071 - 2628108
Alignment:
Q  99 tttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  2628071 tttgtattggtgtggtttcgagatcggaattcacaaca 2628108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 4731982 - 4732026
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||| ||||||||||||||||||||||| || ||||||||||||    
T  4731982 catcattgtttgtattggtgtgattttgagttc-gaattcacaaca 4732026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 12702475 - 12702431
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||| |||||||||||| || ||||||||||||    
T  12702475 catcatagtttgtattgatgtgattttgag-tccgaattcacaaca 12702431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 31218581 - 31218625
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  31218581 catcatagtttatattggtgtga-tttgagaccggaattcacaaca 31218625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 40321400 - 40321443
Alignment:
Q  92 atcatagtttgtattggtgtgattttgagatcggaattcacaacat 137  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  40321400 atcatagtttgtatt-gtgtgattttgag-tcggaattcacaacat 40321443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 355 - 557
Target Start/End: Original strand, 37915076 - 37915275
Alignment:
Q  355 cctctaatggccattcaagtcaccattctacctaactctagattcgctatctgcctcacgtttaaccacattgcaggtgatggaaaatcacttcaccaat 454  Q
    ||||| |||||||||||| |||||||||||||||||||| | ||| |||| || ||| ||||||| ||| |||  |  || |||||||||||||| || |    
T  37915076 cctctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatt 37915175  T
Q  455 tcatgaaattctggtcttatgtttccaaaaccaaaaccatcaacaacagtttatctctagaacactctctgcctcttgatcttcttccttcacatgaaag 554  Q
    |||||||||| ||| | | |||||||||| | | ||| | |||||||   || ||||| ||| |||||| |||||||||   ||||||||| ||||||||    
T  37915176 tcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctccgcctcttga---tcttccttcccatgaaag 37915272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 36205509 - 36205463
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 137  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||    
T  36205509 catcatagtttgtattagtgtgattttgagaccggaattcacaacat 36205463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 723591 - 723547
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  723591 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 723547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 2334262 - 2334218
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  2334262 catcatagtttgtattggtgtgattttgag-tctgaattcacaaca 2334218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 24885909 - 24885953
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  24885909 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 24885953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 32289900 - 32289937
Alignment:
Q  99 tttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||| |||||||||||||||||||||||    
T  32289900 tttgtattggtgtggttttgagatcggaattcacaaca 32289937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 34139617 - 34139573
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  34139617 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 34139573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 36773882 - 36773926
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  36773882 catcatagtttgtattggtgtgattttga-atccgaattcacaaca 36773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 36987919 - 36987875
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  36987919 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 36987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 42362669 - 42362713
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  42362669 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 42362713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 4502973 - 4502932
Alignment:
Q  95 atagtttgtattggtgtgattttgagatcggaattcacaacat 137  Q
    ||||||||||||||||||| ||||||| |||||||||||||||    
T  4502973 atagtttgtattggtgtga-tttgagaccggaattcacaacat 4502932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 37961319 - 37961253
Alignment:
Q  180 cttatatacgctacctcaatggagactttctctccttcaccgttgctgaatccttagcaaacttcaa 246  Q
    |||| ||||| |||||| ||| ||||| | ||||||||||||| |||||||||| |||| |||||||    
T  37961319 cttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaa 37961253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 6594848 - 6594819
Alignment:
Q  91 catcatagtttgtattggtgtgattttgag 120  Q
    ||||||||||||||||||||||||||||||    
T  6594848 catcatagtttgtattggtgtgattttgag 6594819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 14633672 - 14633643
Alignment:
Q  91 catcatagtttgtattggtgtgattttgag 120  Q
    ||||||||||||||||||||||||||||||    
T  14633672 catcatagtttgtattggtgtgattttgag 14633643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 17057213 - 17057169
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||    
T  17057213 catcatattttgtattggtgtgattttgag-tccgaattcacaaca 17057169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 17085196 - 17085152
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||    
T  17085196 catcatattttgtattggtgtgattttgag-tccgaattcacaaca 17085152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 33162298 - 33162254
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||| |||||||||||| || ||||||||||||    
T  33162298 catcatagtttgtattgatgtgattttgag-tccgaattcacaaca 33162254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 16452172 - 16452127
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  16452172 catcatagttcgtattggtgtgattttgagatcggaattcacaaca 16452127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 22963553 - 22963506
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaacatc 138  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||    
T  22963553 catcatagtttgtattggtgtgattttgagtctggaattcacaacatc 22963506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 23824840 - 23824887
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaacatc 138  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||    
T  23824840 catcatagtttgtattggtgtgattttgagtctggaattcacaacatc 23824887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 2171371 - 2171326
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  2171371 catcatagttcgtattggtgtgactttgagaccggaattcacaaca 2171326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 5406047 - 5406002
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  5406047 catcatagtttgtattggtgtgactttaagaccggaattcacaaca 5406002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 5408914 - 5408869
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||    
T  5408914 catcatagtttgtattggtgtgactttgagactggaattcacaaca 5408869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 5410372 - 5410327
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  5410372 catcatagtttgtattggtgtgactttaagaccggaattcacaaca 5410327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 5413239 - 5413194
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||    
T  5413239 catcatagtttgtattggtgtgactttgagactggaattcacaaca 5413194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 26954135 - 26954091
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  26954135 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 26954091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 28137253 - 28137211
Alignment:
Q  93 tcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  28137253 tcatagtttgtattggtgtgattttgaga-ccgaattcacaaca 28137211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 30834378 - 30834333
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||| || |||||||||||||||||||| || |||||||||||    
T  30834378 catcatatttcgtattggtgtgattttgagaccgaaattcacaaca 30834333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 5369926 - 5369881
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  5369926 catcatagtttgtattggtgtgattttgagaccggaattcacaaca 5369881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 29999673 - 29999628
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  29999673 catcatagtttgtattggtgtgattttgagaccggaattcacaaca 29999628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 48143372 - 48143417
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||    
T  48143372 catcatagtttgtattggtgtgattttgagtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 45687031 - 45686987
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  45687031 catcatagtttgtattggtgtgattttgag-tctgaattcacaaca 45686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 48893487 - 48893443
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  48893487 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 48893443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 52095204 - 52095162
Alignment:
Q  93 tcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  52095204 tcatagtttgtattggtgtgattttgag-tccgaattcacaaca 52095162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 56178480 - 56178438
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaa 134  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  56178480 catcatagtttgtattggtgtgattttgag-tccgaattcacaa 56178438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 36463240 - 36463195
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 137  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||    
T  36463240 catcatagtttgtattagtgtgattttgag-tccgaattcacaacat 36463195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 29254816 - 29254861
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||| |||||||||| || || ||||||||||||    
T  29254816 catcatagtttgtattagtgtgattttaagttccgaattcacaaca 29254861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 47038260 - 47038231
Alignment:
Q  91 catcatagtttgtattggtgtgattttgag 120  Q
    ||||||||||||||||||||||||||||||    
T  47038260 catcatagtttgtattggtgtgattttgag 47038231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 52082507 - 52082463
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||    
T  52082507 catcataatttgtattggtgtgattttgag-tccgaattcacaaca 52082463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 54199752 - 54199708
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||| ||||||||||||||||||||||| || ||||||||||||    
T  54199752 catcatcgtttgtattggtgtgattttgag-tccgaattcacaaca 54199708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 9635968 - 9635923
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  9635968 catcatagtttgtattggtgtgattttgagaccggaattcacaaca 9635923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 9634665 - 9634621
Alignment:
Q  92 atcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  9634665 atcatagtttgtattggtgtgattttgagaccggaattcacaaca 9634621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 19683732 - 19683687
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  19683732 catcatagtttgtattggtgtgagtttgagaccggaattcacaaca 19683687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 5236301 - 5236257
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  5236301 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 5236257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 5257988 - 5257943
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  5257988 catcatagttcgtattggtgtgactttgagaccggaattcacaaca 5257943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 9581607 - 9581652
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||    
T  9581607 catcatagtttatattggtgtgattttgagtccggaattcacaaca 9581652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 22834851 - 22834807
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  22834851 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 22834807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 31314764 - 31314808
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||    
T  31314764 catcatagtttgtattggtgtgattttgag-tcggtattcacaaca 31314808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 40734821 - 40734865
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||    
T  40734821 catcatagtttgtattggtgtgattttgaga-ccgaattcacaaca 40734865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 9666313 - 9666270
Alignment:
Q  92 atcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  9666313 atcatagtttgtattggtgtgattttgag-tccgaattcacaaca 9666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 7764789 - 7764835
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 137  Q
    |||||||||||||||||||||  |||||||  |||||||||||||||    
T  7764789 catcatagtttgtattggtgtagttttgagtccggaattcacaacat 7764835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 44700328 - 44700299
Alignment:
Q  91 catcatagtttgtattggtgtgattttgag 120  Q
    ||||||||||||||||||||||||||||||    
T  44700328 catcatagtttgtattggtgtgattttgag 44700299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 51399138 - 51399182
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||    
T  51399138 catcatagtttgtattggtatgattttgag-tccgaattcacaaca 51399182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 20762992 - 20763037
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  20762992 catcatagtttgtattggtgtgattttgagaccggaattcacaaca 20763037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 834014 - 833970
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  834014 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 8550628 - 8550584
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  8550628 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 8550584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 37503406 - 37503362
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  37503406 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 37503362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 40122045 - 40122001
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  40122045 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 40122001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 13316185 - 13316151
Alignment:
Q  102 gtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||| ||||||||||||||    
T  13316185 gtattggtgtgattttgagaccggaattcacaaca 13316151  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 28265403 - 28265358
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 137  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||    
T  28265403 catcatagtttgtattggtgtgattttgag-tccgaattcccaacat 28265358  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 45644202 - 45644158
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||| ||||||||||||| || ||||||||||||    
T  45644202 catcatagtttgtatttgtgtgattttgag-tccgaattcacaaca 45644158  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 120
Target Start/End: Original strand, 49918674 - 49918703
Alignment:
Q  91 catcatagtttgtattggtgtgattttgag 120  Q
    ||||||||||||||||||||||||||||||    
T  49918674 catcatagtttgtattggtgtgattttgag 49918703  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 1833833 - 1833876
Alignment:
Q  92 atcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||    
T  1833833 atcatagtttgtattggtgtgatattgag-tccgaattcacaaca 1833876  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 44455485 - 44455513
Alignment:
Q  92 atcatagtttgtattggtgtgattttgag 120  Q
    |||||||||||||||||||||||||||||    
T  44455485 atcatagtttgtattggtgtgattttgag 44455513  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 29991377 - 29991422
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  29991377 catcatagtttgtattggtgtgactttgagaacggaattcacaaca 29991422  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 35854240 - 35854285
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||    
T  35854240 catcatagtttgtatttgtgtgattttgagactggaattcacaaca 35854285  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 38671069 - 38671025
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  38671069 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 38671025  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 41648858 - 41648814
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  41648858 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 41648814  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 120
Target Start/End: Original strand, 25616179 - 25616208
Alignment:
Q  91 catcatagtttgtattggtgtgattttgag 120  Q
    ||||||||||||||||||||||||||||||    
T  25616179 catcatagtttgtattggtgtgattttgag 25616208  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 48489755 - 48489798
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaac 135  Q
    |||||||||| ||||||||||||||||||| || |||||||||||    
T  48489755 catcatagttggtattggtgtgattttgag-tccgaattcacaac 48489798  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 9789066 - 9789021
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||    
T  9789066 catcatactttgtattggtgtggttttgagatcggaattcacaaca 9789021  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 30182912 - 30182957
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  30182912 catcatagtttgttttggtgtgattttgagaccggaattcacaaca 30182957  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 25413084 - 25413130
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 137  Q
    |||||||||| |||||||||||||||||| | |||||||||||||||    
T  25413084 catcatagttcgtattggtgtgattttgaaaccggaattcacaacat 25413130  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 18441478 - 18441441
Alignment:
Q  99 tttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||||||| |||||||||||||||||||||||    
T  18441478 tttgtattggtgtggttttgagatcggaattcacaaca 18441441  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 5887278 - 5887235
Alignment:
Q  92 atcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  5887278 atcatagtttgtattggtgtgattttgag-tccgaattcacaaca 5887235  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 16649679 - 16649634
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 137  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||    
T  16649679 catcatagtttgtattggtatgattttgagttc-gaattcacaacat 16649634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 26178221 - 26178255
Alignment:
Q  102 gtattggtgtgattttgagatcggaattcacaaca 136  Q
    ||||||||||| |||||||||||||||||||||||    
T  26178221 gtattggtgtggttttgagatcggaattcacaaca 26178255  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 31183297 - 31183341
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||| ||||||||||||||||||||||| || ||||||||||||    
T  31183297 catcatggtttgtattggtgtgattttgag-tccgaattcacaaca 31183341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 13240075 - 13240118
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaac 135  Q
    |||||||||||||||| ||||||||||||| || |||||||||||    
T  13240075 catcatagtttgtattagtgtgattttgagttc-gaattcacaac 13240118  T

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Target: scaffold1519 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 1240 - 1285
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  1240 catcatagttcgtattggtgtgactttgagaccggaattcacaaca 1285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 11890 - 11935
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  11890 catcatagttcgtattggtgtgactttgagaccggaattcacaaca 11935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 434858 - 434903
Alignment:
Q  91 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 136  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  434858 catcatagttcgtattggtgtgactttgagaacggaattcacaaca 434903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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