View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0630_low_2 (Length: 353)
Name: NF0630_low_2
Description: NF0630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0630_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 35284522 - 35284363
Alignment:
| Q |
29 |
gaacccaaaacattcccctcaagatatgtgagtacaatgctgtgagattctttcattttcttgtgctgttttcttttactttctttcttaaacggcctct |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35284522 |
gaacccaaaacattcccctcaagatatgtgagtacaatgctgtgagattctttcattttcttgcgctgttttcttttactttctttcttaaacggcctct |
35284423 |
T |
|
| Q |
129 |
tatccgtattctatgacatgcatgtatatctctataggcaacagatgcaaggatcctccg |
188 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35284422 |
tatccgtattctatggcatgcatgtatatctctataggcaacagatgcaaggatcctccg |
35284363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 257 - 350
Target Start/End: Complemental strand, 35284362 - 35284269
Alignment:
| Q |
257 |
tattcatatattactcaattttcaggccccaaacattggtcctataatggacaatacctatcaaataattcgggatggatatattattcgacat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35284362 |
tattcatatattactcaattttcaggccccaaacattggtgctataatggacaatacctatcaaataattcgggatggatattctattcgacat |
35284269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 185 - 338
Target Start/End: Complemental strand, 35242124 - 35241963
Alignment:
| Q |
185 |
tccggtcagagtcaggttatatatgatg----aatgttcaatgttagttcatggttcttggtttcata----gtgcaacctattcatatattactcaatt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| | |||||||| |||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
35242124 |
tccggtcagagtcaggttatatatgatggctaaatgttcaatgttaataactggttcttagtttcatatatagtgcaacgcagtcatatattactcaatt |
35242025 |
T |
|
| Q |
277 |
ttcaggccccaaacattggtcctataatggacaatacctatcaaataattcgggatggatat |
338 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
35242024 |
ttcaggccccaaacattggtgctataatggacaatacccctcaaatgattcgggatggatat |
35241963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 189 - 338
Target Start/End: Complemental strand, 35272262 - 35272101
Alignment:
| Q |
189 |
gtcagagtcaggttatatatgatg----aatgttcaatgttagttcatggttcttggtttcata----gtgcaacctattcatatatta----ctcaatt |
276 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||||| | |||||||||| ||||||| |
|
|
| T |
35272262 |
gtcagagtcaggttatatatgatggctaaatgttcaatgttaataactggttcttggtttcatatatagtgcaacacagtcatatattaattactcaatt |
35272163 |
T |
|
| Q |
277 |
ttcaggccccaaacattggtcctataatggacaatacctatcaaataattcgggatggatat |
338 |
Q |
| |
|
||||||||| |||| |||||||||||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
35272162 |
ttcaggcccaaaacgttggtcctataatggaaaatacccctcaaataattccggatggatat |
35272101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 332
Target Start/End: Complemental strand, 35247754 - 35247606
Alignment:
| Q |
192 |
agagtcaggttatatatgatg----aatgttcaatgttagttcatggttcttggtttcat----agtgcaacctattcatatattactcaattttcaggc |
283 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| | ||||||||||||||||| || ||||| | |||||||||||| ||||||||||| |
|
|
| T |
35247754 |
agagtcaggttatatataatggctaaatgttcaatgttaatcaatggttcttggtttcattcatagcgcaacacactcatatattacttaattttcaggc |
35247655 |
T |
|
| Q |
284 |
cccaaacattggtcctataatggacaatacctatcaaataattcgggat |
332 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
35247654 |
cccaaaagttggtgctacaatggacaatacccctcaaataattcgggat |
35247606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 601 times since January 2019
Visitors: 4091