View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0630_low_3 (Length: 348)
Name: NF0630_low_3
Description: NF0630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0630_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 16750272 - 16750446
Alignment:
| Q |
75 |
agcagcacagacccactttttcaattcaaaatgctgttgaacggttttatcattgtacacacgttgagcaactgcggtctttccaagtcctccaattcca |
174 |
Q |
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| T |
16750272 |
agcaacacacacccactttttcaattcaaaatgttgttgaacggtcttatcat-gtacacaagttgagcaa-tgcggtctttccaagtcctccaattcca |
16750369 |
T |
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| Q |
175 |
atgatggaaataactgaaacatttcctttgacatcgatgtcagtgttcaacaataactttatcaaatccttcttttc |
251 |
Q |
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| T |
16750370 |
atgatggaaataactgaaacatttcctttgacatcgatgtcagtgttcaacaataactttatcaaatccttcttttc |
16750446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 7482160 - 7481992
Alignment:
| Q |
80 |
cacagacccactttttcaattcaaaatgctgttgaacggttttatcattgtacacacgttgagcaactgcggtctttccaagtcctccaattccaatgat |
179 |
Q |
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| T |
7482160 |
cacaaacccactttttcaactgaaaatgttgttgcacttctttgtcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattat |
7482061 |
T |
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| Q |
180 |
ggaaataactgaaacatttcctttgacatcgatgtcagtgttcaacaataactttatcaaatccttctt |
248 |
Q |
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| T |
7482060 |
agaaataattgaaacattctctttcacattgttgccggtgttaaacaacaactctatcaactctttctt |
7481992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 80 - 239
Target Start/End: Original strand, 7128978 - 7129137
Alignment:
| Q |
80 |
cacagacccactttttcaattcaaaatgctgttgaacggttttatcattgtacacacgttgagcaactgcggtctttccaagtcctccaattccaatgat |
179 |
Q |
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| T |
7128978 |
cacaaacccattttttcaactcaaaatgttgttgcacttctttgtcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattat |
7129077 |
T |
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| Q |
180 |
ggaaataactgaaacatttcctttgacatcgatgtcagtgttcaacaataactttatcaa |
239 |
Q |
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| T |
7129078 |
agaaataattgaaacattctctttcacattgttgccggtgttaaacaacaactctatcaa |
7129137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 7528235 - 7528108
Alignment:
| Q |
124 |
tcattgtacacacgttgagcaactgcggtctttccaagtcctccaattccaatgatggaaataactgaaacatttcctttgacatcgatgtcagtgttca |
223 |
Q |
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| T |
7528235 |
tcattgtatacaaattgagcaagtgcagtctttccaagtcctccaattccaattatagaaataactgaaacattctctttcacattgttgctagtgttaa |
7528136 |
T |
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| Q |
224 |
acaataactttatcaaatccttcttttc |
251 |
Q |
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| T |
7528135 |
acaacaactctatcaactctttcttttc |
7528108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 7520185 - 7520112
Alignment:
| Q |
124 |
tcattgtacacacgttgagcaactgcggtctttccaagtcctccaattccaatgatggaaataactgaaacatt |
197 |
Q |
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| T |
7520185 |
tcattgtatacaaattgagcaagtgcagtctttccaagtcctccaattccaattatagaaataactgaaacatt |
7520112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 7714036 - 7714133
Alignment:
| Q |
151 |
gtctttccaagtcctccaattccaatgatggaaataactgaaacatttcctttgacatcgatgtcagtgttcaacaataactttatcaaatccttctt |
248 |
Q |
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| T |
7714036 |
gtctttccaagtcctccgattccaattatagaaataactgaaacattctccttcacatcgttgccggtgttaaacaacaactctatcaactctttctt |
7714133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 7722252 - 7722369
Alignment:
| Q |
80 |
cacagacccactttttcaattcaaaatgctgttgaacggttttatcattgtacacacgttgagcaactgcggtctttccaagtcctccaattccaatgat |
179 |
Q |
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| T |
7722252 |
cacaaacccattttttcaactcaaaatgttgttgcacttctttgtcgccgtatacaagttgagcaagcgcagtctttccgagtcctccaattccaattat |
7722351 |
T |
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| Q |
180 |
ggaaataactgaaacatt |
197 |
Q |
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| T |
7722352 |
agaaataactgaaacatt |
7722369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 7494518 - 7494403
Alignment:
| Q |
124 |
tcattgtacacacgttgagcaactgcggtctttccaagtcctccaattccaatgatggaaataactgaaacatttcctttgacatcgatgtcagtgttca |
223 |
Q |
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|||||||| ||| |||||||| || ||||| || |||||||| |||||||| || ||||||||||||||||| |||| |||| | || | ||||| | |
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| T |
7494518 |
tcattgtatacaaattgagcaagcgcagtcttccccagtcctccgattccaattatagaaataactgaaacattctctttcacattgttgccggtgttaa |
7494419 |
T |
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| Q |
224 |
acaataactttatcaa |
239 |
Q |
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|||| |||| |||||| |
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| T |
7494418 |
acaacaactctatcaa |
7494403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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