View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0630_low_4 (Length: 263)

Name: NF0630_low_4
Description: NF0630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0630_low_4
NF0630_low_4
[»] chr1 (1 HSPs)
chr1 (1-234)||(39379456-39379689)
[»] chr4 (7 HSPs)
chr4 (38-185)||(3565229-3565376)
chr4 (36-184)||(1686724-1686872)
chr4 (42-185)||(3557215-3557358)
chr4 (45-117)||(3573134-3573206)
chr4 (45-100)||(11849195-11849250)
chr4 (135-185)||(3561396-3561446)
chr4 (48-81)||(3561512-3561545)
[»] chr7 (6 HSPs)
chr7 (45-100)||(29074553-29074608)
chr7 (45-100)||(29106288-29106343)
chr7 (48-90)||(29858913-29858955)
chr7 (46-100)||(29880752-29880806)
chr7 (48-89)||(12820674-12820715)
chr7 (55-100)||(29898858-29898903)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 39379689 - 39379456
Alignment:
Q  1 ttggtgatcgttacgcttatggttccggtttagcctcatgttatgagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39379689 ttggtgatcgttacgcttatggttccggtttagcctcatgttatgagtactggttccgtttatggaacccagccactaggaaaacatctcaaaaaattgg 39379590  T
Q  101 ttgtttttgtgattctggcatttttgtcttcgattttggttgtgataattccactggaacttttaaagtggttgcgtcacgttaccttggcgtcgacgaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  39379589 ttgtttttgtgattctggcatttttgtcttcgattttggttgtgataattccactgaaacttttaaagtggttgcgtcacgttaccttggcgtcggcgaa 39379490  T
Q  201 gaattgacaacccatgtgagagttttcagtttgg 234  Q
    |||||||||||| |||||||||||||||||||||    
T  39379489 gaattgacaaccgatgtgagagttttcagtttgg 39379456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 3565229 - 3565376
Alignment:
Q  38 atgttatgagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattggttgtttttgtgattctggcatttttgtcttcgatttt 137  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||  |   | ||| |||||| ||| |    
T  3565229 atgttatgagtactggctccgtttatggaacccagctactaggaaaatatctccaaaaattggttgttttcgtgatcttcatagtttcgtcttcaattgt 3565328  T
Q  138 ggttgtgataattccactggaacttttaaagtggttgcgtcacgttac 185  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3565329 ggttgtgataattccaccggaacttttaaagtggttgcgtcacgttac 3565376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 1686872 - 1686724
Alignment:
Q  36 tcatgttatgagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattggttgtttttgtgattctggcatttttgtcttcgatt 135  Q
    |||||||| || ||| ||||||||||||||||||| |||||||||||||||||||||| |||||| | |||| |||||     |  |||  ||||| |||    
T  1686872 tcatgttacgaataccggttccgtttatggaacccggccactaggaaaatatctcaaataattgggtcttttcgtgatgtaaacggtttcatcttcaatt 1686773  T
Q  136 ttggttgtgataattccactggaacttttaaagtggttgcgtcacgtta 184  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  1686772 ttggttgtgataattccactggcacttttaaagtggttgcgtcatgtta 1686724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 3557215 - 3557358
Alignment:
Q  42 tatgagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattggttgtttttgtgattctggcatttttgtcttcgattttggtt 141  Q
    ||||| |||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  |     ||| |||||| |||||||||    
T  3557215 tatgactactggctacgtttatggaacccagccactaggaaaatatctccaaaaattggttgttttcgtgatcttcctggtttcgtcttcaattttggtt 3557314  T
Q  142 gtgataattccactggaacttttaaagtggttgcgtcacgttac 185  Q
    ||||| |||| || |  ||||||||||||||||| |||||||||    
T  3557315 gtgatgattctaccgacacttttaaagtggttgcatcacgttac 3557358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 3573206 - 3573134
Alignment:
Q  45 gagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattggttgtttttgtgattctg 117  Q
    ||||||||| |||| || |||||||| |||||  ||||||||||||||||||| || | |||| |||||||||    
T  3573206 gagtactggctccgattctggaaccctgccacccggaaaatatctcaaaaaatggggtattttcgtgattctg 3573134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 11849250 - 11849195
Alignment:
Q  45 gagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 100  Q
    ||||||||| |||||||||||||||||||||| |||| || ||||| |||| ||||    
T  11849250 gagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 11849195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 3561446 - 3561396
Alignment:
Q  135 tttggttgtgataattccactggaacttttaaagtggttgcgtcacgttac 185  Q
    ||||||||||||||||| ||||| | || |||||||||||||||| |||||    
T  3561446 tttggttgtgataattcaactggcatttataaagtggttgcgtcatgttac 3561396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 3561545 - 3561512
Alignment:
Q  48 tactggttccgtttatggaacccagccactagga 81  Q
    |||||| |||||||||||||||||||||||||||    
T  3561545 tactggctccgtttatggaacccagccactagga 3561512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 29074553 - 29074608
Alignment:
Q  45 gagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 100  Q
    ||||||||| |||||||||||||||||||||| |||| || ||||| |||| ||||    
T  29074553 gagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 29074608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 29106288 - 29106343
Alignment:
Q  45 gagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 100  Q
    ||||||||| |||||||||||||||||||||| |||| || ||||| |||| ||||    
T  29106288 gagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 29106343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 29858913 - 29858955
Alignment:
Q  48 tactggttccgtttatggaacccagccactaggaaaatatctc 90  Q
    ||||||||||||||||||||||||||||| |||| || |||||    
T  29858913 tactggttccgtttatggaacccagccacaaggacaacatctc 29858955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 29880752 - 29880806
Alignment:
Q  46 agtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 100  Q
    ||||||| ||| |||||||||||||| |||||| |||||||||||| ||| ||||    
T  29880752 agtactgcttctgtttatggaacccatccactaagaaaatatctcataaatttgg 29880806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 12820715 - 12820674
Alignment:
Q  48 tactggttccgtttatggaacccagccactaggaaaatatct 89  Q
    |||||||||| | | |||||||||||||||||||||||||||    
T  12820715 tactggttccatatctggaacccagccactaggaaaatatct 12820674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 29898858 - 29898903
Alignment:
Q  55 tccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 100  Q
    |||||||||||||||||||||| |||| || |||||||||| ||||    
T  29898858 tccgtttatggaacccagccaccaggacaacatctcaaaaatttgg 29898903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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