View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0631_high_11 (Length: 350)
Name: NF0631_high_11
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0631_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 47886315 - 47886626
Alignment:
| Q |
10 |
attatactaacggtgcatctccattaatgtcatagaataaacatagattttatcatgttaccttgtctgtctgctcgcataaatatctaaaccttgccag |
109 |
Q |
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| T |
47886315 |
attatactaacggtgcatctccattaatgtcatagaataaacatagattttatcatgttaccttctctgtctgctcgcataaatatctaaaccttgccag |
47886414 |
T |
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| Q |
110 |
cctatcgacaggaaaaatttgaagtccagcaaccattaagtcaacaccagaaactggaccttgaatgtaaacaaaaacattagatggctgcttttcaatt |
209 |
Q |
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| T |
47886415 |
cctatcgacaggaaaaatttgaagtccagcaaccattaagtcaacaccagaaactggaccttgaatgtaaacaaaaacattagatggctgcttttcaatt |
47886514 |
T |
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| Q |
210 |
ctaaacgaaccaccgatttcatgccatctgctgtcagaaacttgggtctgtcctccgttggcccattggccgtcaacactaaaggcaataccaacattct |
309 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47886515 |
ctaaacgaaccactgatttcatgccatctgctgtcagaaacttgggtctgtcctccgttggcccattggccgtcaacactaaaggcaataccaacattct |
47886614 |
T |
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| Q |
310 |
gagggccatgtg |
321 |
Q |
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|||||||||||| |
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| T |
47886615 |
gagggccatgtg |
47886626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 4622864 - 4622690
Alignment:
| Q |
64 |
atgttaccttgtctgtctgctcgcataaatatctaaaccttgccagcctatcgacaggaaaaatttgaagtccagcaaccattaagtcaacaccagaaac |
163 |
Q |
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|||| ||||||||||||||| |||||||||||| ||||| | ||||| ||||| |||||||||||||| |||||||||||||| ||||||||| | |
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| T |
4622864 |
atgtcaccttgtctgtctgcatctttaaatatctaaatcttgcatgtctatcaacagggaaaatttgaagtccggcaaccattaagtctacaccagaagc |
4622765 |
T |
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| Q |
164 |
tggaccttgaatgtaaacaaaaacattagatggctgcttttcaattctaaacgaaccaccgatttcatgccatct |
238 |
Q |
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| T |
4622764 |
tggaccttggatataaaccataatctttgttggctgcttttcaattctaaaggatccaccaatttcatgccatct |
4622690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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