View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0631_high_13 (Length: 329)
Name: NF0631_high_13
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0631_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 42759746 - 42759627
Alignment:
| Q |
1 |
tatatatatacatgcctgactgtttgcattttactcatctgtttctaaacgttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42759746 |
tatatatatacatgcctgactgtttgcattttactcatctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgc |
42759647 |
T |
|
| Q |
101 |
tggagttaatttgatggtcg |
120 |
Q |
| |
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|||||||||||||||||||| |
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| T |
42759646 |
tggagttaatttgatggtcg |
42759627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 205 - 319
Target Start/End: Complemental strand, 42759548 - 42759433
Alignment:
| Q |
205 |
cgttaaggttgccgttgaagtttgccaaatctattttgttcaagactatttctgtttaa-ttaagtatccagtttcatttctattccatttatatttttc |
303 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |
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| T |
42759548 |
cgttaaggttgttgttgaagtttgccaaatctattttgttcaagactatttctgtttaatttaagtatctagtttcatttcaattccatttatatttttc |
42759449 |
T |
|
| Q |
304 |
cctaagtaattctctg |
319 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
42759448 |
cctaagtaattctctg |
42759433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 1402102 - 1402208
Alignment:
| Q |
1 |
tatatatatacatgcctgactgtttgcattttactcatctgtttctaaacgttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgc |
100 |
Q |
| |
|
|||||||| |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1402102 |
tatatatacacatgcctgactgtttccgttttactcatctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgc |
1402201 |
T |
|
| Q |
101 |
tggagtt |
107 |
Q |
| |
|
||||||| |
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|
| T |
1402202 |
tggagtt |
1402208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 1402299 - 1402400
Alignment:
| Q |
218 |
gttgaagtttgccaaatctattttgttcaagactatttctgtttaattaagtatccagtttcatttctattccatttatatttttccctaagtaattctc |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
1402299 |
gttgaaatttgccaaatctattttgttcaagactatatctgtttaattaagtatccagtttcatttcaattccatttatattttgccctaagtaattctc |
1402398 |
T |
|
| Q |
318 |
tg |
319 |
Q |
| |
|
|| |
|
|
| T |
1402399 |
tg |
1402400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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