View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0631_high_21 (Length: 253)

Name: NF0631_high_21
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0631_high_21
NF0631_high_21
[»] chr6 (35 HSPs)
chr6 (1-230)||(25513196-25513425)
chr6 (1-230)||(26145318-26145547)
chr6 (1-241)||(25582028-25582268)
chr6 (1-230)||(26058228-26058457)
chr6 (1-230)||(26078198-26078427)
chr6 (1-230)||(25547289-25547518)
chr6 (108-241)||(25485409-25485542)
chr6 (1-212)||(26850990-26851201)
chr6 (51-212)||(26952148-26952309)
chr6 (26-212)||(26886452-26886641)
chr6 (96-211)||(28794825-28794940)
chr6 (92-214)||(27662842-27662964)
chr6 (47-211)||(26961478-26961642)
chr6 (47-213)||(26979777-26979943)
chr6 (107-213)||(27681411-27681517)
chr6 (1-213)||(26826144-26826356)
chr6 (47-212)||(27425224-27425389)
chr6 (1-108)||(26145174-26145281)
chr6 (97-211)||(27675206-27675323)
chr6 (97-211)||(31286993-31287107)
chr6 (47-212)||(25076218-25076383)
chr6 (47-151)||(27602412-27602516)
chr6 (107-211)||(27696220-27696324)
chr6 (97-213)||(27716127-27716243)
chr6 (47-145)||(27528970-27529068)
chr6 (97-213)||(28788802-28788918)
chr6 (101-211)||(26864029-26864139)
chr6 (47-143)||(26658346-26658442)
chr6 (47-143)||(26764317-26764413)
chr6 (96-212)||(26648898-26649014)
chr6 (96-212)||(26754866-26754982)
chr6 (96-211)||(27703846-27703961)
chr6 (98-211)||(27590612-27590725)
chr6 (96-214)||(27608746-27608864)
chr6 (1-45)||(25485368-25485412)
[»] chr1 (3 HSPs)
chr1 (1-211)||(26138255-26138465)
chr1 (47-211)||(265960-266124)
chr1 (96-212)||(28125321-28125437)
[»] chr4 (7 HSPs)
chr4 (1-204)||(18677232-18677435)
chr4 (1-196)||(18729176-18729371)
chr4 (1-204)||(18697075-18697278)
chr4 (1-204)||(18721746-18721949)
chr4 (47-212)||(18076166-18076331)
chr4 (1-204)||(18687287-18687490)
chr4 (1-199)||(18653155-18653353)
[»] scaffold0003 (1 HSPs)
scaffold0003 (47-212)||(61974-62139)
[»] scaffold0349 (1 HSPs)
scaffold0349 (97-213)||(15702-15818)
[»] scaffold0277 (2 HSPs)
scaffold0277 (97-213)||(11281-11397)
scaffold0277 (96-211)||(2320-2435)
[»] chr2 (1 HSPs)
chr2 (1-206)||(17990853-17991058)
[»] chr8 (1 HSPs)
chr8 (72-211)||(22023671-22023808)
[»] scaffold0419 (1 HSPs)
scaffold0419 (96-211)||(9951-10066)
[»] scaffold1870 (1 HSPs)
scaffold1870 (96-141)||(1232-1277)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 25513196 - 25513425
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    |||||||||||||||| ||| | |||||| ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  25513196 acttgaaatcttaaatacatgtggttgcagcaaacctgagcttttcccacccttacagctgccctctcttaagaaatttgaaatctctgggtgtaagagt 25513295  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25513296 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatcttcatttcaaaatt 25513395  T
Q  201 tcagtgaacttcaacggttaacaatatctg 230  Q
    ||||||||||| ||||||||||||||||||    
T  25513396 tcagtgaactttaacggttaacaatatctg 25513425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 26145318 - 26145547
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    |||||||||||||||| ||| |  ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||    
T  26145318 acttgaaatcttaaatacatctaattgcctcaaacttgagcatttcccacccttacagctgccctctcttaagaaatttgaaatctctggttgtgagagt 26145417  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26145418 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgcgatattcatttcaaaatt 26145517  T
Q  201 tcagtgaacttcaacggttaacaatatctg 230  Q
    ||||||||||||||||||||||||||||||    
T  26145518 tcagtgaacttcaacggttaacaatatctg 26145547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 25582028 - 25582268
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  25582028 acttgaaatcttaaatgcatatggttgcagcaaacttgagcatttcccacccttacagctgccctctcttaagaaatttgaaatctctaagtgtgagagt 25582127  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||  |||||||||  | |||||||||||||||||||||||||||||||||||    
T  25582128 ctcaagaattttccagaattattatgcaagatgagaaatataaaagatatcaagatatatgccatttccatagaagaattgccatattcatttcaaaatt 25582227  T
Q  201 tcagtgaacttcaacggttaacaatatctgaatgctaccta 241  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  25582228 tcagtgaacttcaacggttaaaaatatctagatgctaccta 25582268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 26058228 - 26058457
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    ||||||||||||| || ||||| |||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||   |||  ||||    
T  26058228 acttgaaatcttagatacatttggttgcagcgaacttgagcatttcccacccttacagctgccctctcttaagaaatttgaaatcactgattgtgtgagt 26058327  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26058328 ctcaagaattttccagaattattatgtgagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 26058427  T
Q  201 tcagtgaacttcaacggttaacaatatctg 230  Q
    ||||| ||||||||||||||||||||||||    
T  26058428 tcagtaaacttcaacggttaacaatatctg 26058457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 26078198 - 26078427
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    ||||||||||||| || ||||| |||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||   |||  ||||    
T  26078198 acttgaaatcttagatacatttggttgcagcgaacttgagcatttcccacccttacagctgccctctcttaagaaatttgaaatcactgattgtgtgagt 26078297  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26078298 ctcaagaattttccagaattattatgtgagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 26078397  T
Q  201 tcagtgaacttcaacggttaacaatatctg 230  Q
    ||||| ||||||||||||||||||||||||    
T  26078398 tcagtaaacttcaacggttaacaatatctg 26078427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 25547289 - 25547518
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    |||||||||||||||||||| | |||||    | |||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||| |||||    
T  25547289 acttgaaatcttaaatgcatatggttgcttagagcttgagcatttcccacccttacagctgccctctcttaagaaatttgaaatctcttattgtgagagt 25547388  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||| |||||||||||||| ||||||||||||||||    
T  25547389 ctcaagaattttccagaattattatgcaagatgacaaatataaaagatatcaagatatatgatacttctatagaagaattgccgtattcatttcaaaatt 25547488  T
Q  201 tcagtgaacttcaacggttaacaatatctg 230  Q
    ||||||||||||||||||||||||||||||    
T  25547489 tcagtgaacttcaacggttaacaatatctg 25547518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 25485409 - 25485542
Alignment:
Q  108 attttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtga 207  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25485409 attttccagaattattatgtaagatgtcaaatataaaagatattaagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtga 25485508  T
Q  208 acttcaacggttaacaatatctgaatgctaccta 241  Q
    | |||||||||||||||||| || || |||||||    
T  25485509 aattcaacggttaacaatatatggatactaccta 25485542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 26850990 - 26851201
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    ||||||||||||| ||||||   |||||| ||| ||||||  ||| |||||||||||  ||||||||||| || ||||   | | |||||||||  ||||    
T  26850990 acttgaaatcttagatgcatggggttgcaacaagcttgagagttttccacccttacaattgccctctcttaaggaattgatattatctaggtgttcgagt 26851089  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||| |||||| || ||  ||||||||||| ||||||||||| ||||||| |||||     
T  26851090 ctcaagaattttccagaattattatgcaagatgacaaatatagaagagattgagttacatcgtacttccataggagaattgccatcttcatttaaaaatc 26851189  T
Q  201 tcagtgaacttc 212  Q
    ||||||||||||    
T  26851190 tcagtgaacttc 26851201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 51 - 212
Target Start/End: Original strand, 26952148 - 26952309
Alignment:
Q  51 ccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatat 150  Q
    |||||||| |||||||||||||| ||||  || |||||  |||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||| ||    
T  26952148 ccttacagttgccctctcttgaggaattgaaactctctgagtgtgagagtctcaagagctttccagaattattatgcaagatgacaaatataaaagagat 26952247  T
Q  151 tgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtgaacttc 212  Q
    |  ||||||||| || ||||||| ||||||||||| |||||||  |||| ||||||||||||    
T  26952248 tacgatatatgaaacatccataggagaattgccattttcatttggaaatctcagtgaacttc 26952309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 26886452 - 26886641
Alignment:
Q  26 tgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattat 125  Q
    |||| ||| ||||||  ||| |||||||||||||||||||||||  || |||||||| |||||   |||| |||||||||||| || |||||||||||||    
T  26886452 tgcatcaagcttgagagttttccacccttacagctgccctctctcaaggaatttgaactctcttattgtaggagtctcaagaaattcccagaattattat 26886551  T
Q  126 gtaagatgacaaatataaaagatattgagatatatgat---acttccatagaagaattgccatattcatttcaaaatttcagtgaacttc 212  Q
    | |||||||||||| ||||||| |||| | || || ||   |||||||||| || |||||||| ||||||| ||||| ||||||||||||    
T  26886552 gcaagatgacaaatttaaaagagattgcgttacataataacacttccataggaggattgccattttcatttgaaaatctcagtgaacttc 26886641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 28794825 - 28794940
Alignment:
Q  96 agagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttca 195  Q
    |||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||  |||| | |||||||||||| ||||||||||| |||||||||    
T  28794825 agagtctcaagaattttccaaaattattatgcaagatgacaaatatcaaagagattggtatatcttatacttccataggagaattgccatcttcatttca 28794924  T
Q  196 aaatttcagtgaactt 211  Q
    |||| ||| |||||||    
T  28794925 aaatctcaatgaactt 28794940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 27662964 - 27662842
Alignment:
Q  92 tgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcat 191  Q
    |||| ||||||||||| |||||||||||||||||| |||||| ||||||||||||| |||  | ||| ||||||||||||||||||| |||||| |||||    
T  27662964 tgtaggagtctcaagagttttccagaattattatgcaagatgtcaaatataaaagagatttggttatgtgatacttccatagaagaaatgccattttcat 27662865  T
Q  192 ttcaaaatttcagtgaacttcaa 214  Q
    || ||||| ||| ||||||||||    
T  27662864 ttaaaaatctcaatgaacttcaa 27662842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 211
Target Start/End: Original strand, 26961478 - 26961642
Alignment:
Q  47 ccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaag 146  Q
    |||||||||||  ||||||||||| || |||| ||| |||||| |||| | |||||||| | ||||||||||||||||||  | ||||||||||||||||    
T  26961478 ccacccttacatttgccctctcttaaggaattggaactctctaagtgtgatagtctcaaaagttttccagaattattatgccaaatgacaaatataaaag 26961577  T
Q  147 atattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtgaactt 211  Q
    | ||| |  | | |||||||||||||| |||||| |||| |||||||||| || |||||||||||    
T  26961578 agattaatctttgtgatacttccataggagaatttccattttcatttcaatatctcagtgaactt 26961642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 213
Target Start/End: Original strand, 26979777 - 26979943
Alignment:
Q  47 ccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaag 146  Q
    |||||||||||  ||||||||||| || |||| ||| |||||  |||| | |||||||| | ||||||||||||||||||| | |||| ||||||||||     
T  26979777 ccacccttacatttgccctctcttaaggaattggaactctctgagtgtgatagtctcaaaagttttccagaattattatgtcaaatgaaaaatataaaaa 26979876  T
Q  147 atattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtgaacttca 213  Q
    | |||| | | | | |||||||||||| ||||||||||| |||||||||| || |||||||||||||    
T  26979877 agattgggttctctaatacttccataggagaattgccattttcatttcaatatctcagtgaacttca 26979943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 27681411 - 27681517
Alignment:
Q  107 aattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtg 206  Q
    |||||||||||||||||||| |||||| || |||||||||| ||||| |||| | |||||||||||| |||| |||||| ||||||||||||| ||||||    
T  27681411 aattttccagaattattatgcaagatggcacatataaaagagattgatatatctaatacttccataggagaactgccattttcatttcaaaatctcagtg 27681510  T
Q  207 aacttca 213  Q
    |||||||    
T  27681511 aacttca 27681517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 26826144 - 26826356
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaa-tctctaggtgtaagag 99  Q
    |||||||||||||||||||     ||||| ||| || |||  ||| |||||||||| | ||||||| ||| || | ||||||| ||||| | ||||||||    
T  26826144 acttgaaatcttaaatgcagagaattgcagcaagctcgagagttttccacccttacggttgccctcccttaagga-tttgaaactctctggctgtaagag 26826242  T
Q  100 tctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaat 199  Q
    |||||||| ||||||| ||||||||||| |||||||||| |||||||  |||    | |||||||||||||||| ||||||||||| |||||||| ||||    
T  26826243 tctcaagagttttccaaaattattatgtgagatgacaaaaataaaaggaatttgtttgtatgatacttccataggagaattgccatcttcatttcgaaat 26826342  T
Q  200 ttcagtgaacttca 213  Q
     ||| |||||||||    
T  26826343 ctcaatgaacttca 26826356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 212
Target Start/End: Complemental strand, 27425389 - 27425224
Alignment:
Q  47 ccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaag 146  Q
    ||||||||||||   ||||||||| |||| || ||| ||||||  |||||||||||||||| |||||||||||||||||| ||||||||||||||||||     
T  27425389 ccacccttacagtctccctctcttcagaatttggaactctctaattgtaagagtctcaagagttttccagaattattatgcaagatgacaaatataaaat 27425290  T
Q  147 atattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtgaacttc 212  Q
     |||   | |  | || |||||||||| |||||| |||| ||| ||||||||| | ||||||||||    
T  27425289 ctatcttgttgaaggaaacttccataggagaatttccattttcctttcaaaatcttagtgaacttc 27425224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 26145174 - 26145281
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    |||||||||||||||||||| | |||||| ||| ||||||||||| |||||||||||||||| ||||||| |||||||  ||||||||   ||| |||||    
T  26145174 acttgaaatcttaaatgcatctggttgcagcaagcttgagcattttccacccttacagctgctctctcttaagaaattcaaaatctctcattgtgagagt 26145273  T
Q  101 ctcaagaa 108  Q
    ||||||||    
T  26145274 ctcaagaa 26145281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 27675323 - 27675206
Alignment:
Q  97 gagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagata---tatgatacttccatagaagaattgccatattcattt 193  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||  ||   ||| |||  ||||||| ||||||||||| |||||||    
T  27675323 gagtctcaagagttttccagaattattatgcaagatgacaaatatcaaagagattgatttagattataatatatccataggagaattgccatcttcattt 27675224  T
Q  194 caaaatttcagtgaactt 211  Q
    |||||| |||||||||||    
T  27675223 caaaatctcagtgaactt 27675206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 31286993 - 31287107
Alignment:
Q  97 gagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaa 196  Q
    ||||||||| | |||||||||||||||||| ||||||||||||||||||  ||||  | |   | |||||||||||| ||||||||||| ||||||||||    
T  31286993 gagtctcaatagttttccagaattattatgcaagatgacaaatataaaacgtattttgtttgttaatacttccataggagaattgccatcttcatttcaa 31287092  T
Q  197 aatttcagtgaactt 211  Q
    ||| |||||||||||    
T  31287093 aatctcagtgaactt 31287107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 25076218 - 25076383
Alignment:
Q  47 ccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaag 146  Q
    |||||||||| ||||||||||||| || ||||  || | |||  ||||  ||||||||||| ||||||||||||||| || |||||||||||| | |||     
T  25076218 ccacccttacggctgccctctcttaaggaattgaaactttctgagtgttggagtctcaagagttttccagaattattgtgcaagatgacaaatttgaaaa 25076317  T
Q  147 atattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtgaacttc 212  Q
     ||||  | |  | | ||||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  25076318 gtattttgttggacggtacttccataggagaattgccattttcatttcaaaatctcagtgaacttc 25076383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 27602516 - 27602412
Alignment:
Q  47 ccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaag 146  Q
    ||||| ||||| ||||||| |||| ||| ||| ||| || | | ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  27602516 ccacctttacaactgccctgtcttaagagattggaactcgccatgtgtaagagtctcaagagttttccagaattattatgcaagatgacaaatttaaaag 27602417  T
Q  147 atatt 151  Q
    |||||    
T  27602416 atatt 27602412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 27696324 - 27696220
Alignment:
Q  107 aattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtg 206  Q
    |||||||||||||||||||| |||||| || |||||||||| ||||| |||| | ||| |||||||| | || |||||| ||||||||||||| ||||||    
T  27696324 aattttccagaattattatgcaagatggcacatataaaagagattgatatattttatatttccataggaaaactgccattttcatttcaaaatctcagtg 27696225  T
Q  207 aactt 211  Q
    |||||    
T  27696224 aactt 27696220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 27716243 - 27716127
Alignment:
Q  97 gagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaa 196  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||| |  |||||  | | | | |||||||||||| |||| |||||| ||||||||||    
T  27716243 gagtctcaagagttttccagaattattatgcaagatgacaaatatagacaatatttggttgtgtaatacttccataggagaactgccattttcatttcaa 27716144  T
Q  197 aatttcagtgaacttca 213  Q
    ||| | |||||||||||    
T  27716143 aatcttagtgaacttca 27716127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 27529068 - 27528970
Alignment:
Q  47 ccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaa 145  Q
    ||||||||||||   ||||||||| ||||  | ||| ||||||  |||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  27529068 ccacccttacagtctccctctcttcagaatctggaactctctaattgtaagagtctcaagagttttccagaattattatgcaagatgacaaatataaaa 27528970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 28788802 - 28788918
Alignment:
Q  97 gagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaa 196  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||| ||| | |||  | |  |  |||||||||||  ||||||||||| ||||||||||    
T  28788802 gagtctcaagagttttccaaaattattatgcaagatgacaaatattaaaaagatttggttgcagaatacttccataagagaattgccatcttcatttcaa 28788901  T
Q  197 aatttcagtgaacttca 213  Q
    ||| |||||||||||||    
T  28788902 aatctcagtgaacttca 28788918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 26864029 - 26864139
Alignment:
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    ||||||| |||||||||||||||||| ||||||| |||||||||||| ||   | | | ||| |||||||||  ||||||| ||| |||||||||||||     
T  26864029 ctcaagagttttccagaattattatgcaagatgataaatataaaagagatccggttgtctgaaacttccataagagaattgtcattttcatttcaaaatc 26864128  T
Q  201 tcagtgaactt 211  Q
    |||||||||||    
T  26864129 tcagtgaactt 26864139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 26658346 - 26658442
Alignment:
Q  47 ccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataa 143  Q
    |||||||||| ||| ||||||||| || ||||| || ||  | ||||||||||||||||||| |||||||||||| |||| |||||| |||||||||    
T  26658346 ccacccttacggcttccctctcttaaggaatttcaactcagttggtgtaagagtctcaagaaatttccagaattactatgcaagatgtcaaatataa 26658442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 26764317 - 26764413
Alignment:
Q  47 ccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataa 143  Q
    |||||||||| ||| ||||||||| || ||||| || ||  | ||||||||||||||||||| |||||||||||| |||| |||||| |||||||||    
T  26764317 ccacccttacggcttccctctcttaaggaatttcaactcagttggtgtaagagtctcaagaaatttccagaattactatgcaagatgtcaaatataa 26764413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 26648898 - 26649014
Alignment:
Q  96 agagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttca 195  Q
    ||||||| ||||||||||||||||||||||| || |||| |||||||||| |||||    | | |   ||||| |||| ||||||||||| |||||||||    
T  26648898 agagtctaaagaattttccagaattattatgcaaaatgagaaatataaaacatatttttttgtctagaacttcaataggagaattgccatcttcatttca 26648997  T
Q  196 aaatttcagtgaacttc 212  Q
     ||| ||||||||||||    
T  26648998 taatctcagtgaacttc 26649014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 26754866 - 26754982
Alignment:
Q  96 agagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttca 195  Q
    ||||||| ||||||||||||||||||||||| || |||| |||||||||| |||||    | | |   ||||| |||| ||||||||||| |||||||||    
T  26754866 agagtctaaagaattttccagaattattatgcaaaatgagaaatataaaacatatttttttgtctagaacttcaataggagaattgccatcttcatttca 26754965  T
Q  196 aaatttcagtgaacttc 212  Q
     ||| ||||||||||||    
T  26754966 taatctcagtgaacttc 26754982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 27703961 - 27703846
Alignment:
Q  96 agagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttca 195  Q
    |||||||| | | |||||||||||||||||| ||||||||||||||| |  |||||  | |  |  ||||||| |||| |||| |||||| |||||||||    
T  27703961 agagtctcgatagttttccagaattattatgcaagatgacaaatatagataatatttggttgcagcatacttctataggagaactgccattttcatttca 27703862  T
Q  196 aaatttcagtgaactt 211  Q
    |||| |||||||||||    
T  27703861 aaatctcagtgaactt 27703846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 27590725 - 27590612
Alignment:
Q  98 agtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaa 197  Q
    |||||||| | ||||||| |||||||||| ||||||||||||||| |  | |||  | | |   |||||||||||  ||||||||||| |||||||||||    
T  27590725 agtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcatttcaaa 27590626  T
Q  198 atttcagtgaactt 211  Q
    || |||||||||||    
T  27590625 atctcagtgaactt 27590612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 27608864 - 27608746
Alignment:
Q  96 agagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttca 195  Q
    |||||||| | | |||||||||||||||||| ||||||||||| ||| |  |||||  | |   |  ||||||||||  |||| |||||| |||||||||    
T  27608864 agagtctcgatagttttccagaattattatgcaagatgacaaagatagacaatattttgttgattagtacttccataagagaactgccattttcatttca 27608765  T
Q  196 aaatttcagtgaacttcaa 214  Q
    |||| ||||||||||||||    
T  27608764 aaatctcagtgaacttcaa 27608746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25485368 - 25485412
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcattt 45  Q
    |||||||||||||||||||| | |||||| |||||||||||||||    
T  25485368 acttgaaatcttaaatgcatatggttgcagcaaacttgagcattt 25485412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 26138255 - 26138465
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    |||||||| ||||||||||    |||||| ||| || |||  ||| |||||||||||| || |||||||| ||||||| ||| ||||||  |||||||||    
T  26138255 acttgaaaccttaaatgcaaagggttgcatcaagctcgagagttttccacccttacagttgacctctcttaagaaattggaactctctatttgtaagagt 26138354  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    ||||||| ||||||||||||| |  ||| | |||||||||||||||| |||  | | ||||  || ||||||| ||||||||||| ||||||||||||||    
T  26138355 ctcaagagttttccagaattagttggtaggttgacaaatataaaagacatttggttgtatggaacctccataggagaattgccattttcatttcaaaatt 26138454  T
Q  201 tcagtgaactt 211  Q
    |||||||||||    
T  26138455 tcagtgaactt 26138465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 266124 - 265960
Alignment:
Q  47 ccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaag 146  Q
    ||||||||||| |||||||||||| || || | ||| ||||| |||||  ||||||||| |  |||||| |||||||||| ||||||||||||||| ||     
T  266124 ccacccttacaactgccctctcttaaggaaatggaactctctgggtgttggagtctcaatagctttccaaaattattatgcaagatgacaaatatagaaa 266025  T
Q  147 atattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtgaactt 211  Q
    |||||  | | ||||| |||||||||  ||||||||||| ||||||||||||| |||||| ||||    
T  266024 atattttgttgtatgaaacttccataagagaattgccatcttcatttcaaaatctcagtggactt 265960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 28125437 - 28125321
Alignment:
Q  96 agagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttca 195  Q
    |||||||||||| |||||||||||||||| | ||||||||||||||| |||| |||  | |   ||  |||||||||  |||||| |||| |||||||||    
T  28125437 agagtctcaagagttttccagaattattaggcaagatgacaaatatagaagagatttggttgcgtggaacttccataagagaattaccattttcatttca 28125338  T
Q  196 aaatttcagtgaacttc 212  Q
    |||| ||||||||||||    
T  28125337 aaatctcagtgaacttc 28125321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 18677435 - 18677232
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    ||||||||||||||||||||     |||||||| |||||| |||| |||||||||  ||||||||||||  || |||| ||  |||||   ||||||||     
T  18677435 acttgaaatcttaaatgcatgggcatgcaccaagcttgagaattttccacccttatggctgccctctctgaaggaattggacctctctttttgtaagaga 18677336  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| ||||  || | |   ||||||| |  ||||||||||| |||||||||||||     
T  18677335 ctcaagagttttccagaattattatgtaagatgacaaatacaaaagagattggaatgtgtataacttccacaacagaattgccattttcatttcaaaatc 18677236  T
Q  201 tcag 204  Q
    ||||    
T  18677235 tcag 18677232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 18729371 - 18729176
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    ||||||||||||||||||||   | |||| ||| |||||| |||| |||||||| | ||||||||||||| || |||| ||  || ||   ||||||||     
T  18729371 acttgaaatcttaaatgcatggggatgcatcaagcttgagaattttccacccttgcggctgccctctcttaaggaattggacctcacttattgtaagaga 18729272  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaa 196  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| ||||  || | | | ||||||| |  ||||||||||| ||||||||||    
T  18729271 ctcaagagttttccagaattattatgtaagatgacaaatacaaaagagattggaatgtgtaaaacttccacaagagaattgccattttcatttcaa 18729176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 18697278 - 18697075
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    |||||||||| ||||||||| | | |||| ||| ||||||  ||| |||||||||  ||||||||||||  || |||| || ||||||   |||| |||     
T  18697278 acttgaaatcataaatgcatgtggatgcagcaagcttgagagttttccacccttatggctgccctctctgaaggaattggacatctcttattgtaggaga 18697179  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| ||||  || | |   ||||||| |  ||||||||||| |||||||||||||     
T  18697178 ctcaagagttttccagaattattatgtaagatgacaaatacaaaagagattggaatgtgtacaacttccacaagagaattgccattttcatttcaaaatc 18697079  T
Q  201 tcag 204  Q
    ||||    
T  18697078 tcag 18697075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 18721949 - 18721746
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    |||||||||||||||||||| | | |||| ||| ||||||  ||| |||||||||  |||||||||||||||| |||| ||  |||||   ||| ||||     
T  18721949 acttgaaatcttaaatgcatctggatgcatcaagcttgagagttttccacccttatggctgccctctcttgaggaattggacctctctttttgtgagaga 18721850  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||  ||||  || | |   ||||||| |  ||||||||||| |||||||||||||     
T  18721849 ctcaagagttttccagaactattatgtaagatgacaaatacaaaagcgattggaatgtgtataacttccacaagagaattgccattttcatttcaaaatc 18721750  T
Q  201 tcag 204  Q
    ||||    
T  18721749 tcag 18721746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 18076166 - 18076331
Alignment:
Q  47 ccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaag 146  Q
    ||||||||||||   ||||||||| |||| || ||| ||||||  |||||||||||||||| |||||||||||||||||| ||||||||||||||||||     
T  18076166 ccacccttacagtctccctctcttcagaatttggaactctctaattgtaagagtctcaagagttttccagaattattatgcaagatgacaaatataaaat 18076265  T
Q  147 atattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtgaacttc 212  Q
     |||   | |  | || |||||||||| |||||| |||| ||| ||||||||| | ||||||||||    
T  18076266 ctatcttgttgaaggaaacttccataggagaatttccattttcctttcaaaatcttagtgaacttc 18076331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 18687490 - 18687287
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    |||||||||| ||||||||| | | ||||  || ||||||  ||| |||||||||  ||||||||||||  || |||| || ||||||   |||| |||     
T  18687490 acttgaaatcataaatgcatgtggatgcagtaagcttgagagttttccacccttatggctgccctctctgaaggaattggacatctcttattgtaggaga 18687391  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| ||||  || | |   ||||||| |  ||||||||||| |||||||||||||     
T  18687390 ctcaagagttttccagaattattatgtaagatgacaaatacaaaagagattggaatgtgtataacttccacaagagaattgccattttcatttcaaaatc 18687291  T
Q  201 tcag 204  Q
    ||||    
T  18687290 tcag 18687287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 18653353 - 18653155
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    |||||||||| |||||||||   | ||||  || ||||||  ||| |||||||||  ||||||||||||| || |||| ||  |||||   ||||||||     
T  18653353 acttgaaatcataaatgcatggggatgcaggaagcttgagagttttccacccttatggctgccctctcttaaggaattggacgtctcttattgtaagaga 18653254  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaat 199  Q
    ||||||  |||||||||| ||||||||||||||||||||| |||||| ||||  || | |   ||||||| |  ||||||||||| |||||||||||||    
T  18653253 ctcaagtgttttccagaactattatgtaagatgacaaatacaaaagagattggaatgtgtataacttccacaagagaattgccattttcatttcaaaat 18653155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 61974 - 62139
Alignment:
Q  47 ccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaag 146  Q
    ||||||||||||   ||||||||| |||| || ||| ||||||  |||||||||||||||| |||||||||||||||||| ||||||||||||||||||     
T  61974 ccacccttacagtctccctctcttcagaatttggaactctctaattgtaagagtctcaagagttttccagaattattatgcaagatgacaaatataaaat 62073  T
Q  147 atattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtgaacttc 212  Q
     |||   | |  | || |||||||||| |||||| |||| ||| ||||||||| | ||||||||||    
T  62074 ctatcttgttgaaggaaacttccataggagaatttccattttcctttcaaaatcttagtgaacttc 62139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 15702 - 15818
Alignment:
Q  97 gagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaa 196  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||| |  |||||  | | | | |||||||||||| |||| |||||| ||||||||||    
T  15702 gagtctcaagagttttccagaattattatgcaagatgacaaatatagacaatatttggttgtgtaatacttccataggagaactgccattttcatttcaa 15801  T
Q  197 aatttcagtgaacttca 213  Q
    ||| | |||||||||||    
T  15802 aatcttagtgaacttca 15818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 11397 - 11281
Alignment:
Q  97 gagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaa 196  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||| ||| | |||  | |  |  |||||||||||  ||||||||||| ||||||||||    
T  11397 gagtctcaagagttttccaaaattattatgcaagatgacaaatattaaaaagatttggttgcagaatacttccataagagaattgccatcttcatttcaa 11298  T
Q  197 aatttcagtgaacttca 213  Q
    ||| |||||||||||||    
T  11297 aatctcagtgaacttca 11281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 2435 - 2320
Alignment:
Q  96 agagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttca 195  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||| |||   |||  | |  |  | |||||||||  ||||||||||| |||||||||    
T  2435 agagtctcaagagttttccaaaattattatgcaagatgacaaatatgaaaatgatttggttgcagaaaacttccataagagaattgccatcttcatttca 2336  T
Q  196 aaatttcagtgaactt 211  Q
    |||| ||| |||||||    
T  2335 aaatctcaatgaactt 2320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 17991058 - 17990853
Alignment:
Q  1 acttgaaatcttaaatgcatttcgttgcaccaaacttgagcatttcccacccttacagctgccctctcttgagaaatttgaaatctctaggtgtaagagt 100  Q
    |||||||||||||||||||    |||| | ||| || |||  ||| || ||||||||| || | |||||| ||||||| ||| | ||||| |||| ||      
T  17991058 acttgaaatcttaaatgcacagggttgtagcaagctcgagagttttcctcccttacagttggcatctcttaagaaattggaactatctagatgtaggaac 17990959  T
Q  101 ctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatt 200  Q
    || |||| |||||||||||||||||| ||||||||||| ||| || |||||  | |    |||| |||||||| ||||||||||| |||||||||||||     
T  17990958 ctaaagagttttccagaattattatgcaagatgacaaagatagaacatatttggttggcagatagttccataggagaattgccattttcatttcaaaatc 17990859  T
Q  201 tcagtg 206  Q
    ||||||    
T  17990858 tcagtg 17990853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 22023671 - 22023808
Alignment:
Q  72 agaaatttgaaatctctaggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccat 171  Q
    ||||||| ||| |||| | ||||| ||||||| ||  ||||||| |||||||||| ||||||| ||||||| || |||||  | | ||| ||||||||||    
T  22023671 agaaattggaactctccaagtgtaggagtctcgag--ttttccaaaattattatgcaagatgaaaaatatagaatatatttcgttgtataatacttccat 22023768  T
Q  172 agaagaattgccatattcatttcaaaatttcagtgaactt 211  Q
    |  ||||||||||| ||| ||||||||| ||||| |||||    
T  22023769 aagagaattgccatcttcttttcaaaatctcagtaaactt 22023808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 9951 - 10066
Alignment:
Q  96 agagtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttca 195  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||| |||   |||  | |  |  | |||||||||  ||||||||||| |||||||||    
T  9951 agagtctcaagagttttccaaaattattatgcaagatgacaaatatgaaaacgatttggttgcagaaaacttccataagagaattgccatcttcatttca 10050  T
Q  196 aaatttcagtgaactt 211  Q
    |||| ||| |||||||    
T  10051 aaatctcaatgaactt 10066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 1232 - 1277
Alignment:
Q  96 agagtctcaagaattttccagaattattatgtaagatgacaaatat 141  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||    
T  1232 agagtctcaagagttttccaaaattattatgcaagatgacaaatat 1277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1322 times since January 2019
Visitors: 4114