View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0631_high_7 (Length: 503)
Name: NF0631_high_7
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0631_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 30 - 487
Target Start/End: Original strand, 35059729 - 35060183
Alignment:
| Q |
30 |
ttccatgtaggaattaaactcattaaaagcaataagacaataataaactcggatgagtctcaagcactgcatagttccacatgcaaaaagaataatgata |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35059729 |
ttccatgtaggaattaaactcattaaaagcaataagacaataataaactcggatgagtctcaagcactgcatagttccacatgcaaaaagaataatgata |
35059828 |
T |
|
| Q |
130 |
acatctatcatccttttacaatatgttactctgtcaaccataaaagttcgaaactatattcaatagggtaagtagttaatgatatgaaaaaatgtctttg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
35059829 |
acatctatcatccttttacaatatgttactctgtcaaccataaaagttcgaaactatattcaatagg-taagtagttaatgatatgaaaaaatgtct--g |
35059925 |
T |
|
| Q |
230 |
tgtaaagcagtgctttgcaattattttatgaaaatccgcaacatattctgctttatcaaacaagatttgctgtagaagaatttccacacgaaatcccaaa |
329 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
35059926 |
tgtaaagcagtgctttgcaattattttatgaaaatccgcaacatattctgctttatcaaacaagatttgctgtagaataatttccacacaaaatcccaaa |
35060025 |
T |
|
| Q |
330 |
acaccactgccgggaaacaaaaagtaggagaatcatacaaaaaggaaaggatgcaaaaggcagatgttgctattttacagcggtgcaaatatttgacttg |
429 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35060026 |
acaccactgccgggaaacaaaaagtaggagaatcgtacaaaaaggaaaggatgcaaaaggcagatgttgctattttacagcggtgcaaatatttgacttg |
35060125 |
T |
|
| Q |
430 |
caagcaagttaaaactctatcaaacttcttaaacatgcatataagaacaaacatgcaa |
487 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35060126 |
caagcaagttaaaactctatcaaacttcttaaacatgcatataagaacaaacatgcaa |
35060183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 30 - 496
Target Start/End: Original strand, 43021033 - 43021490
Alignment:
| Q |
30 |
ttccatgtaggaattaaactcattaaaagcaataagacaataataaactcggatgagtctcaagcactgcatagttccacatgcaaaaagaataatgata |
129 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
43021033 |
ttccatgaaagaaataaactcattaaaagcaataagacaataa---actcggatgagtcttaagcactgcatagttc-acatgccaaaagaataatgata |
43021128 |
T |
|
| Q |
130 |
acatctatcatccttttacaatatgttactctgtcaaccataaaagttcgaaactatattcaatagggtaagtagttaatgatatgaaaaaatgtctttg |
229 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
43021129 |
acatctatcatccttttacaatatgttactctgtcaaccataaaagttcgaaactatattcaatagg-taagtagttaatgatatgcaaaaatgtctttg |
43021227 |
T |
|
| Q |
230 |
tgtaaagcagtgctttgcaattattttatgaaaatccgcaacatattctgctttatcaaacaagatttgctgtagaagaatttccacacgaaatcccaaa |
329 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43021228 |
tgtaaagcagtgctttgcaattattttatgaaaatccacaacatattctgctttatcaaacaagatttgctgtagaataatttccacacgaaatcccaaa |
43021327 |
T |
|
| Q |
330 |
acaccactgccgggaaacaaaaagtaggagaatcatacaaaaaggaaaggatgcaaaaggcagatgttgctattttacagcggtgcaaatatttgacttg |
429 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
43021328 |
acaccactgccgggaaacaaaaagtagcagaatcgtacaaaaaggaaaggatgcaaaaggcagatgttgctattttacaacggtgcaaatatttgattt- |
43021426 |
T |
|
| Q |
430 |
caagcaagttaaaactctatcaaacttcttaaacatgcatataagaacaaacatgcaacagctaggg |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| |
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|
| T |
43021427 |
---gcaagttaaaactctatcaaacttcttaaacatgcatataagaaaaaacatgcaatagcaaggg |
43021490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 480
Target Start/End: Original strand, 42810211 - 42810680
Alignment:
| Q |
30 |
ttccatgtaggaattaaactcattaaaagcaataagacaataataaactcggatgagtctcaagcactgcatagttccacatgcaaaaagaataatgata |
129 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| ||| ||||| ||| ||||||| |||||||| | |||||||||||||| ||||| |
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|
| T |
42810211 |
ttccatgaaagaattaaactcattaaaagcaataagacaa------acttcgatgactcttaagcactccatagttcaa-atgcaaaaagaatagtgata |
42810303 |
T |
|
| Q |
130 |
acatctatcatccttttacaatatgttactctgtcaaccataaaagttcgaaactatattcaatagggtaagtagttaatgatatgaaaaaatgtctttg |
229 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||| || | |||||||||||||| ||| ||||||||||| | |
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|
| T |
42810304 |
acat-tatcatccttttacaatatgttactctgccaatcataaaagttggaaactaaattcactatg-taagtagttaatgacatggaaaaatgtctt-g |
42810400 |
T |
|
| Q |
230 |
tgtaaagcagtgctttgcaattattttatgaaaatccgcaacatattctgctttatc------------------aaacaagatttgctgtagaagaatt |
311 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| |||| |
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| T |
42810401 |
tgtaaagcagtgctttacaattattttatgaaaatccacaacatattctgctttatcaagagaggaaaatggaataaacaagatttgttgtagaataatt |
42810500 |
T |
|
| Q |
312 |
tccacacgaaatcccaaaacaccactgccgggaaacaaaaagtaggagaatcatacaaaaaggaaaggatgcaaaaggcag---------------atgt |
396 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
42810501 |
tccacacgaaatcccaatacactactgctgggaaacaaaaagtaggagaatcgtacaaaaaggaaaggatgcaaaaggcagataataaagtcttaaatgt |
42810600 |
T |
|
| Q |
397 |
tgctattttacagcggtgcaaatatttgacttgcaagcaagttaaaactctatcaaacttcttaaacatgcatataagaacaaa |
480 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42810601 |
tgctattttacaacggtgcaaatatttgactt----gcaagttaaaactctatcaaactgcttaaacatgcatataagaacaaa |
42810680 |
T |
|
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