View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0631_high_9 (Length: 361)

Name: NF0631_high_9
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0631_high_9
NF0631_high_9
[»] scaffold0214 (3 HSPs)
scaffold0214 (16-279)||(11630-11891)
scaffold0214 (206-280)||(11814-11888)
scaffold0214 (20-93)||(11630-11703)
[»] chr5 (49 HSPs)
chr5 (16-283)||(42630711-42630971)
chr5 (16-280)||(8323707-8323969)
chr5 (16-280)||(791595-791867)
chr5 (16-280)||(26534506-26534759)
chr5 (15-280)||(130253-130509)
chr5 (13-93)||(26534685-26534765)
chr5 (206-280)||(26534509-26534583)
chr5 (191-280)||(33377820-33377909)
chr5 (192-280)||(8489126-8489214)
chr5 (14-93)||(5146690-5146769)
chr5 (206-280)||(130257-130331)
chr5 (206-280)||(8323710-8323784)
chr5 (191-280)||(5146675-5146764)
chr5 (12-93)||(35454637-35454717)
chr5 (18-93)||(8323895-8323970)
chr5 (192-283)||(35454623-35454713)
chr5 (14-93)||(42630894-42630973)
chr5 (191-285)||(13823320-13823414)
chr5 (206-280)||(42630714-42630788)
chr5 (16-93)||(791592-791669)
chr5 (16-93)||(33377835-33377912)
chr5 (192-280)||(6518206-6518294)
chr5 (14-82)||(13823148-13823215)
chr5 (192-280)||(19898927-19899015)
chr5 (16-95)||(5146504-5146582)
chr5 (16-95)||(35454451-35454529)
chr5 (226-280)||(791810-791864)
chr5 (192-266)||(40881992-40882066)
chr5 (16-93)||(130435-130512)
chr5 (12-93)||(8489119-8489200)
chr5 (195-268)||(27319643-27319716)
chr5 (191-295)||(228705-228809)
chr5 (14-82)||(14069859-14069926)
chr5 (16-88)||(14388512-14388583)
chr5 (205-280)||(6518389-6518463)
chr5 (10-93)||(6518390-6518472)
chr5 (217-283)||(19897225-19897290)
chr5 (16-93)||(40881792-40881867)
chr5 (16-93)||(228717-228794)
chr5 (16-77)||(6518203-6518264)
chr5 (16-93)||(13823335-13823412)
chr5 (16-93)||(19898941-19899018)
chr5 (192-280)||(40881795-40881881)
chr5 (19-87)||(19897228-19897295)
chr5 (217-280)||(14069864-14069926)
chr5 (217-280)||(14388518-14388580)
chr5 (217-280)||(35454454-35454516)
chr5 (217-280)||(5146507-5146569)
chr5 (199-280)||(13823153-13823233)
[»] chr4 (27 HSPs)
chr4 (13-280)||(3102537-3102801)
chr4 (13-280)||(40533960-40534224)
chr4 (16-264)||(9231580-9231825)
chr4 (17-140)||(13690216-13690339)
chr4 (206-280)||(3102543-3102617)
chr4 (16-94)||(3102726-3102804)
chr4 (206-280)||(13690218-13690292)
chr4 (15-93)||(18936864-18936942)
chr4 (16-93)||(40534150-40534227)
chr4 (206-280)||(9231583-9231657)
chr4 (206-280)||(40533966-40534040)
chr4 (192-280)||(18936850-18936938)
chr4 (192-280)||(37177799-37177887)
chr4 (15-82)||(11147013-11147080)
chr4 (198-280)||(18381488-18381570)
chr4 (13-93)||(18381496-18381576)
chr4 (214-280)||(5121002-5121068)
chr4 (14-87)||(5121000-5121073)
chr4 (13-93)||(37177813-37177893)
chr4 (217-280)||(11147017-11147080)
chr4 (299-344)||(55694129-55694174)
chr4 (14-93)||(18936674-18936752)
chr4 (203-280)||(18936679-18936755)
chr4 (13-81)||(37177621-37177688)
chr4 (35-78)||(9231782-9231825)
chr4 (218-283)||(11147224-11147288)
chr4 (14-94)||(11147211-11147290)
[»] chr1 (45 HSPs)
chr1 (13-280)||(10227715-10227979)
chr1 (18-280)||(26551992-26552253)
chr1 (20-274)||(19059378-19059633)
chr1 (206-279)||(19059378-19059451)
chr1 (214-280)||(10227907-10227973)
chr1 (192-280)||(28217692-28217780)
chr1 (11-93)||(10227707-10227789)
chr1 (15-93)||(23346418-23346496)
chr1 (206-280)||(26551993-26552067)
chr1 (192-280)||(23346422-23346510)
chr1 (192-280)||(48871410-48871498)
chr1 (16-93)||(26552179-26552256)
chr1 (191-280)||(50892966-50893055)
chr1 (14-94)||(28217528-28217607)
chr1 (14-93)||(28217706-28217785)
chr1 (16-95)||(50893148-50893226)
chr1 (16-94)||(4156892-4156969)
chr1 (16-94)||(48871247-48871324)
chr1 (9-94)||(7062183-7062267)
chr1 (191-280)||(39669230-39669319)
chr1 (191-280)||(41833877-41833966)
chr1 (16-93)||(48871424-48871501)
chr1 (16-88)||(48752586-48752657)
chr1 (214-286)||(48871244-48871315)
chr1 (214-285)||(50893158-50893228)
chr1 (25-94)||(23346607-23346675)
chr1 (16-93)||(50892963-50893040)
chr1 (192-252)||(7062038-7062098)
chr1 (217-285)||(48752592-48752659)
chr1 (217-280)||(7062195-7062257)
chr1 (16-87)||(42180571-42180641)
chr1 (191-286)||(42180744-42180837)
chr1 (17-93)||(50904992-50905070)
chr1 (16-93)||(41833874-41833951)
chr1 (25-93)||(19059565-19059633)
chr1 (17-93)||(39669245-39669321)
chr1 (217-280)||(28217533-28217595)
chr1 (16-87)||(41834069-41834139)
chr1 (217-280)||(42180574-42180636)
chr1 (196-280)||(50904994-50905080)
chr1 (218-274)||(23346620-23346675)
chr1 (217-280)||(41834074-41834136)
chr1 (47-93)||(7062038-7062084)
chr1 (47-93)||(42180759-42180805)
chr1 (220-265)||(50905113-50905158)
[»] chr8 (23 HSPs)
chr8 (16-286)||(37994708-37994975)
chr8 (13-152)||(44036811-44036950)
chr8 (192-280)||(41539773-41539861)
chr8 (190-267)||(25101746-25101823)
chr8 (16-93)||(37994895-37994972)
chr8 (191-280)||(2814416-2814505)
chr8 (16-94)||(2814430-2814508)
chr8 (206-280)||(37994711-37994785)
chr8 (191-280)||(397177-397266)
chr8 (10-82)||(41539969-41540040)
chr8 (206-280)||(44036817-44036891)
chr8 (192-269)||(14193337-14193414)
chr8 (16-93)||(14193512-14193588)
chr8 (14-93)||(397192-397271)
chr8 (15-93)||(41539769-41539847)
chr8 (203-280)||(14193509-14193585)
chr8 (211-280)||(41539963-41540031)
chr8 (14-82)||(2814241-2814308)
chr8 (16-82)||(397007-397072)
chr8 (206-280)||(2814246-2814319)
chr8 (14-93)||(14193322-14193400)
chr8 (225-280)||(397010-397064)
chr8 (190-223)||(44036985-44037018)
[»] chr2 (37 HSPs)
chr2 (16-280)||(16115049-16115308)
chr2 (16-280)||(42028581-42028842)
chr2 (13-280)||(7317632-7317896)
chr2 (16-280)||(31860079-31860346)
chr2 (16-280)||(2059490-2059745)
chr2 (16-280)||(13279840-13280096)
chr2 (14-82)||(7317833-7317901)
chr2 (14-93)||(15332849-15332928)
chr2 (206-280)||(42028765-42028839)
chr2 (9-82)||(36059285-36059358)
chr2 (13-93)||(13280022-13280102)
chr2 (13-93)||(31860272-31860352)
chr2 (9-93)||(42028571-42028655)
chr2 (206-280)||(2059493-2059567)
chr2 (210-280)||(36059278-36059348)
chr2 (191-280)||(31470590-31470678)
chr2 (217-280)||(31860082-31860145)
chr2 (17-95)||(3671822-3671899)
chr2 (206-280)||(16115231-16115305)
chr2 (192-286)||(38086140-38086234)
chr2 (16-93)||(31470587-31470663)
chr2 (206-274)||(7317644-7317712)
chr2 (225-280)||(13279843-13279898)
chr2 (201-280)||(15332844-15332923)
chr2 (15-93)||(2059671-2059749)
chr2 (214-280)||(3671824-3671889)
chr2 (16-93)||(16115046-16115123)
chr2 (211-285)||(38085965-38086038)
chr2 (16-82)||(38085967-38086032)
chr2 (16-73)||(15330449-15330505)
chr2 (10-95)||(31470763-31470847)
chr2 (214-286)||(31470773-31470844)
chr2 (192-285)||(3671996-3672089)
chr2 (226-280)||(15330452-15330505)
chr2 (16-93)||(38086154-38086231)
chr2 (16-93)||(3672010-3672087)
chr2 (15-44)||(36059247-36059276)
[»] chr6 (12 HSPs)
chr6 (15-280)||(33022163-33022429)
chr6 (206-280)||(33022167-33022241)
chr6 (191-280)||(21389024-21389113)
chr6 (17-93)||(33022355-33022431)
chr6 (12-94)||(21389208-21389289)
chr6 (191-280)||(7789842-7789931)
chr6 (17-94)||(7789856-7789933)
chr6 (16-93)||(21389021-21389098)
chr6 (217-280)||(21389220-21389282)
chr6 (27-94)||(7789678-7789744)
chr6 (201-269)||(7789681-7789748)
chr6 (193-269)||(28472535-28472611)
[»] chr3 (23 HSPs)
chr3 (15-280)||(27072912-27073169)
chr3 (13-274)||(36274128-36274392)
chr3 (13-280)||(10598805-10599059)
chr3 (16-152)||(33219072-33219208)
chr3 (15-139)||(33214580-33214704)
chr3 (190-280)||(33214446-33214536)
chr3 (192-280)||(19580483-19580571)
chr3 (206-280)||(10598811-10598885)
chr3 (15-93)||(33214442-33214520)
chr3 (206-280)||(33214626-33214700)
chr3 (16-93)||(27073095-27073172)
chr3 (191-280)||(36635410-36635499)
chr3 (192-280)||(11651003-11651091)
chr3 (220-280)||(33219075-33219135)
chr3 (206-280)||(36274312-36274386)
chr3 (16-93)||(36635425-36635502)
chr3 (13-93)||(19580497-19580577)
chr3 (225-280)||(27072916-27072971)
chr3 (16-93)||(36274120-36274196)
chr3 (217-281)||(36635240-36635303)
chr3 (19-82)||(36635241-36635303)
chr3 (16-78)||(10599000-10599062)
chr3 (16-93)||(11651000-11651077)
[»] scaffold0135 (3 HSPs)
scaffold0135 (16-264)||(37446-37691)
scaffold0135 (206-280)||(37449-37523)
scaffold0135 (35-78)||(37648-37691)
[»] chr7 (20 HSPs)
chr7 (16-152)||(19804797-19804933)
chr7 (191-280)||(40521188-40521277)
chr7 (190-280)||(19805585-19805675)
chr7 (191-280)||(7298638-7298727)
chr7 (206-280)||(19804800-19804874)
chr7 (16-93)||(40521203-40521280)
chr7 (16-95)||(28948991-28949069)
chr7 (16-93)||(7298635-7298712)
chr7 (11-82)||(7298835-7298905)
chr7 (217-280)||(40521019-40521081)
chr7 (12-82)||(19805612-19805682)
chr7 (14-87)||(40521014-40521086)
chr7 (16-94)||(16979604-16979681)
chr7 (217-283)||(46567957-46568022)
chr7 (191-257)||(46568130-46568196)
chr7 (19-88)||(46567960-46568028)
chr7 (225-280)||(7298843-7298897)
chr7 (217-293)||(16979616-16979691)
chr7 (217-285)||(28949004-28949071)
chr7 (47-93)||(46568145-46568191)
[»] scaffold0140 (2 HSPs)
scaffold0140 (10-82)||(15841-15913)
scaffold0140 (217-280)||(15850-15913)


Alignment Details
Target: scaffold0214 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 11891 - 11630
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||| ||||||||    
T  11891 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccataaatggtgttggtg 11792  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacga 215  Q
    |||||||||||||||||||||| || |||||||||||            |||||||||||||||||        ||||||||||||||||||||||| ||    
T  11791 gtgaatggtgatggaagatcacaaactagtggtggtg--gagagagagaaaggactagttgatttagtttttttataattattttaaaagaaaacaatga 11694  T
Q  216 tgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatt 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11693 tgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 11630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 11814 - 11888
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11814 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 11888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 11630 - 11703
Alignment:
Q  20 aattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||| ||||||||||    
T  11630 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgtttt 11703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 49)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 42630711 - 42630971
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttttccaccataaatggtgttggtg 42630810  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacga 215  Q
    |||||||||||||||||||||||||||||||||| ||             |||||||||||||| |        ||||||||||||||||||||||||||    
T  42630811 gtgaatggtgatggaagatcacgaattagtggtgctggagagag------aggactagttgattca-tttttttataattattttaaaagaaaacaacga 42630903  T
Q  216 tgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttc 283  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  42630904 cgtgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaatttttc 42630971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 8323707 - 8323969
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || ||||||||||||||| |||| ||||||||    
T  8323707 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttttccaccatgaatggtgttggtg 8323806  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacga 215  Q
    |||||||||||||||||||||||| ||||||||||||            |||||||||||||||||        ||||||||||||||||||||||||||    
T  8323807 gtgaatggtgatggaagatcacgagttagtggtggtg--gagagagagaaaggactagttgatttattttttttataattattttaaaagaaaacaacga 8323904  T
Q  216 tgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
     ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  8323905 cgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 8323969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 791867 - 791595
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaa-----taaac----taaaacatgacacttcattgtttttccaccataaatg 106  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||     |||||    ||||||||||||| ||||| |||||||||||||||||    
T  791867 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaacaaattaaaacatgacacgtcattatttttccaccataaatg 791768  T
Q  107 ctgttggtggtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaaga 206  Q
     ||||||||||||||||||||||||||||||||| |||||||||||            ||||||||||| |||||        |||||||||||||||||    
T  791767 gtgttggtggtgaatggtgatggaagatcacgaactagtggtggtggagagagagagaaaggactagttaatttattttttt-ataattattttaaaaga 791669  T
Q  207 aaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  791668 aaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaattt 791595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 26534506 - 26534759
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||| || ||||||||||||||| |||| ||||||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatggtgttggtg 26534605  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacga 215  Q
    ||||||||||||||||||| ||||          |||            |||||||||||||||||        ||||||||||||||||||||||||||    
T  26534606 gtgaatggtgatggaagatgacga----------gtggagagagagagaaaggactagttgattta-tttttttataattattttaaaagaaaacaacga 26534694  T
Q  216 tgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26534695 cgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 26534759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 130253 - 130509
Alignment:
Q  15 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggt 114  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||| ||| ||||||||||||| || |||||||||||||||||||| |||||||    
T  130253 agagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccataaatggtgttggt 130352  T
Q  115 ggtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacg 214  Q
    ||||||||||||||||||||||||    ||||| |               |||||||||||||||||        |||||||||||||||||||||||||    
T  130353 ggtgaatggtgatggaagatcacg----agtggag----agagagagagaaaggactagttgattta-tttttttataattattttaaaagaaaacaacg 130443  T
Q  215 atgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    | |||| || ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||    
T  130444 acgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaattt 130509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 26534765 - 26534685
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  26534765 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 26534685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 26534583 - 26534509
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  26534583 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaattt 26534509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 33377820 - 33377909
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||| ||||||| || ||||||| ||||||||||||||||||||| |||||| |||||||||||||||| | ||||||||    
T  33377820 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaattt 33377909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 8489214 - 8489126
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||| || ||||||| ||||||||||    
T  8489214 aattattttaaaataaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaattt 8489126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 5146769 - 5146690
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  5146769 aagagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 5146690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 130331 - 130257
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||    
T  130331 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaattt 130257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 8323784 - 8323710
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||    
T  8323784 aaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaattt 8323710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 5146675 - 5146764
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||| ||||||| || ||||||| ||||||||||||||||||||| ||||||  ||||||||||| ||| ||||||||||    
T  5146675 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaattt 5146764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 35454717 - 35454637
Alignment:
Q  12 aaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  35454717 aaaagaaaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 35454637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 8323970 - 8323895
Alignment:
Q  18 gaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||||| || |||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 8323895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 35454623 - 35454713
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttc 283  Q
    ||||||||| ||  ||||||| || ||||||| ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  35454623 aattatttttaactaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttttc 35454713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 42630973 - 42630894
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||| || |||||||    
T  42630973 aagaaaaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgtttt 42630894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 13823320 - 13823414
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttcct 285  Q
    |||||||||||||| ||||||| || ||||||| |||||||||||| |||||||  |||||| |||| ||||||||||| |||||||||| ||||    
T  13823320 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctcct 13823414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 42630788 - 42630714
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||    
T  42630788 aaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaattt 42630714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 791592 - 791669
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| || |||||||    
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 791669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 33377912 - 33377835
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||| |||||||||||||||||  |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  33377912 gagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 33377835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 6518294 - 6518206
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||| ||||||| ||  ||  || ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  6518294 aattattttaaaataaaacaatgacatgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaattt 6518206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 13823148 - 13823215
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    ||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||    
T  13823148 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcgtataaacaataaactaaaacatgacac 13823215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 19898927 - 19899015
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||| ||||||| ||  |||||| |||||||||||||||| |||  |||||| |||||||||||||||| ||||||||||    
T  19898927 aattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaattt 19899015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 5146504 - 5146582
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 95  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| | ||| ||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacatgacacgttattttttttc 5146582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 35454451 - 35454529
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 95  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||| ||||||    
T  35454451 gagaaattcttgtgtatgaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcattttttttc 35454529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 791810 - 791864
Alignment:
Q  226 tttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  791810 tttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaattt 791864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 40881992 - 40882066
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttc 266  Q
    ||||||||||||| |||||||  | ||||||||||||||||||||||||||||| |||||| ||||| |||||||    
T  40881992 aattattttaaaataaaacaataacgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 130512 - 130435
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||| |||||||| |||| || |||||||    
T  130512 gagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgtttt 130435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 8489119 - 8489200
Alignment:
Q  12 aaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||||| || ||||  |||||| ||||||||||| ||| ||||| ||||||| ||||||||||    
T  8489119 aaaagagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgtttt 8489200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 27319643 - 27319716
Alignment:
Q  195 tattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcct 268  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||| ||||| || ||||||    
T  27319643 tattttaaaataaaacaatgatgtttcatattttaatttgttgtttgtaagaatgatatgttagattggttcct 27319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 228809 - 228705
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttccttaaaa 290  Q
    |||||||||||||| |||||||  | ||||||| ||||||||| |||||| |||| |||||| |||||||||||||||| |||  ||||| ||||| |||    
T  228809 taattattttaaaataaaacaataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctccttcaaa 228710  T
Q  291 aataa 295  Q
     ||||    
T  228709 tataa 228705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 14069859 - 14069926
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||| |||||||||||||    
T  14069859 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttataaacaacaaattaaaacatgacac 14069926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 14388583 - 14388512
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcatt 88  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||| ||||||||||||| |||||    
T  14388583 gagaaattcttgtgtaggaacaaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcatt 14388512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 6518389 - 6518463
Alignment:
Q  205 gaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||| || ||||| |||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||    
T  6518389 gaaaaaaatgatgtatcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaattt 6518463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 6518472 - 6518390
Alignment:
Q  10 aaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||| ||||| |||| || ||||| ||||    
T  6518472 aaaaaagagaaattcttgtgtagtaacgaacctaa-ctatcattcttacaaacaacaaattaaaatatgatacatcattttttt 6518390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 19897290 - 19897225
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttc 283  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||    
T  19897290 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataatttttc 19897225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 40881792 - 40881867
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||| ||||||||||||||||||||   || || ||||||||||||||| ||||||||||||| ||||||||||    
T  40881792 gagaaattgttgtgtaggaacgaacctaac--attattcttacaaacaataaattaaaacatgacacgtcattgtttt 40881867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 228717 - 228794
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||  |||||||||||||||||||  |||||| |||| |||||||||| ||||||||||||| | ||||||||    
T  228717 gagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgtttt 228794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 6518203 - 6518264
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacat 77  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||||||    
T  6518203 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 6518264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 13823412 - 13823335
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||||| |||  ||||||  ||||||| || ||| ||||||||||||| ||||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgtttt 13823335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 19899018 - 19898941
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||||||||||||  ||||||  ||| |||||| ||| ||||||||||||  ||||||||||    
T  19899018 gagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgtttt 19898941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 40881881 - 40881795
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||| ||||||| || ||||||| ||||||||| ||||||||||| || ||  |||||||||||||||| |||| |||||    
T  40881881 aattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaataat--gttaggttcgttcctacacaacaattt 40881795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 19897228 - 19897295
Alignment:
Q  19 aaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 87  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||    
T  19897228 aaattattgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcat 19897295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 14069926 - 14069864
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| |||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||    
T  14069926 gtgtcatgttttaatttgttgtttataagaatgata-gttaggttcgttcctacacaagaattt 14069864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 14388518 - 14388580
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||    
T  14388518 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaattt 14388580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 35454516 - 35454454
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||    
T  35454516 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaattt 35454454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 5146569 - 5146507
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| ||||||||| ||||||||||| |||||| |||||||||||||||| |||| |||||    
T  5146569 gtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataattt 5146507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 13823233 - 13823153
Alignment:
Q  199 ttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||| ||  | ||||||| ||||| ||| |||||| || | ||||||| ||||||||||||||| ||||||||||    
T  13823233 ttaaaagaaaaaaaatacgtgtcatgttttagtttattgtttatacgaatgatag-ttaggttcgttcctacacaagaattt 13823153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 3102537 - 3102801
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttg 112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || || |||||||||||||||||||| |||||    
T  3102537 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaatggtgttg 3102636  T
Q  113 gtggtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaa 212  Q
    ||||||||||||||||||||||||| || |||||||||||            |||||||||||||||||        ||||||||||||||| |||||||    
T  3102637 gtggtgaatggtgatggaagatcaccaactagtggtggtg--gagagagagaaaggactagttgattta-attttttataattattttaaaaaaaaacaa 3102733  T
Q  213 cgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3102734 cgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 3102801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 40533960 - 40534224
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttg 112  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||| || || ||||||||||||||| |||| |||||    
T  40533960 aaagagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccatgaatggtgttg 40534059  T
Q  113 gtggtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaa 212  Q
    ||||||||||||||||||||||||| || |||||||||||            |||||||||||||||||        |||||||||||||||||||||||    
T  40534060 gtggtgaatggtgatggaagatcaccaactagtggtggtg--gagagagagaaaggactagttgattta-attttttataattattttaaaagaaaacaa 40534156  T
Q  213 cgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40534157 cgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 40534224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 9231580 - 9231825
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    ||||||||||||||||||||||||||||  ||| ||||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||| ||||||||    
T  9231580 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatggtgttggtg 9231679  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacga 215  Q
    |||||||||||||||||||||| || || ||||||||            |||||||||||||||||        ||||||||||||||||||||||||||    
T  9231680 gtgaatggtgatggaagatcacaaactaatggtggtg--gagagagagaaaggactagttgattta-tttttttataattattttaaaagaaaacaacga 9231776  T
Q  216 tgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgt 264  Q
     ||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  9231777 cgtagcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 13690216 - 13690339
Alignment:
Q  17 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtgg 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || || |||||||||||||||||||| |||||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaatggtgttggtgg 13690315  T
Q  117 tgaatggtgatggaagatcacgaa 140  Q
    ||||||||||||||||||||||||    
T  13690316 tgaatggtgatggaagatcacgaa 13690339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 3102617 - 3102543
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3102617 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 3102543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 3102804 - 3102726
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 94  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||||||    
T  3102804 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttt 3102726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 13690292 - 13690218
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13690292 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 13690218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 18936942 - 18936864
Alignment:
Q  15 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  18936942 agagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 18936864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 40534227 - 40534150
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 40534150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 9231657 - 9231583
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  9231657 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaattt 9231583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 40534040 - 40533966
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| || |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  40534040 aaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaattt 40533966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 18936850 - 18936938
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||| ||||||| || ||||||| ||||||||| ||||||||||| ||||||  ||||||||||||||| ||||||||||    
T  18936850 aattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaattt 18936938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 37177799 - 37177887
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||| ||||||| || || |||| ||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||    
T  37177799 aattattttaaaataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaattt 37177887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 11147013 - 11147080
Alignment:
Q  15 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||    
T  11147013 agagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacac 11147080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 18381488 - 18381570
Alignment:
Q  198 tttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| ||||||| |||||||||| ||||||||||||| ||||||| |||| | |||||||||||||||| ||||||||||    
T  18381488 tttaaaataaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaattt 18381570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 18381576 - 18381496
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||||||||||||  | |||| ||||||| ||| ||| ||||||||||||| ||||||||||    
T  18381576 aaagagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgtttt 18381496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 5121002 - 5121068
Alignment:
Q  214 gatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||    
T  5121002 gatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaattt 5121068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 5121073 - 5121000
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 87  Q
    ||||||||||||||||||||||| |||||||  |||||| ||||||||||| ||| ||||||||||||| ||||    
T  5121073 aagagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcat 5121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 37177893 - 37177813
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||| ||||||||||| |||  |||||| ||||||||||| ||| |||||||||| || ||||||||||    
T  37177893 aaagagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgtttt 37177813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 11147080 - 11147017
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| ||||||||||||||||||||| ||||||  ||||||||||||||| ||||||||||    
T  11147080 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaattt 11147017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 55694174 - 55694129
Alignment:
Q  299 aaaattattatgttgcatgtataataataattagacaaaattacat 344  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  55694174 aaaattattatgttgcatgtacaataataattagacaaaattacat 55694129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 18936674 - 18936752
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||| |||||||| ||| ||||||| ||||||||||| ||| |||||||||| || ||||| ||||    
T  18936674 aagagaaattcttgtgtatgaacgaacataa-ctatcattcttacaaacaacaaattaaaacatgatacgtcattttttt 18936752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 18936755 - 18936679
Alignment:
Q  203 aagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| || || || |||| ||||||||||||||||||||| |||||| |||| |||||||| || ||||||||||    
T  18936755 aagaaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaattt 18936679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 37177621 - 37177688
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgaca 81  Q
    |||||||||||||| ||||||||||||   ||| |||||| ||||||||||||||| ||||| ||||||    
T  37177621 aaagagaaattcttctgtaggaacgaattcaat-tatcattcttacaaacaataaattaaaatatgaca 37177688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 9231825 - 9231782
Alignment:
Q  35 acgaacctaatctatcatccttacaaacaataaactaaaacatg 78  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||    
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 9231782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 11147224 - 11147288
Alignment:
Q  218 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttc 283  Q
    |||||||||||||||| ||||||||||| || ||| ||||| |||||| ||| | |||||||||||    
T  11147224 tgtcatattttaatttattgtttgtaagaataata-gttagattcgtttctacataagaatttttc 11147288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 11147290 - 11147211
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 94  Q
    |||| |||||||| ||||| |||||| |||| |||| || ||||||||||||||| ||||| ||||||  ||||| |||||    
T  11147290 aagaaaaattcttatgtagaaacgaatctaa-ctattattcttacaaacaataaattaaaatatgacatgtcatttttttt 11147211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 10227979 - 10227715
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttg 112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||| |||||    
T  10227979 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacatcattatttttccaccataaatggtgttg 10227880  T
Q  113 gtggtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaa 212  Q
    ||||||||||||||||||||||||| || |||||||||||            ||||||||||| |||||        |||||||||||||||||||||||    
T  10227879 gtggtgaatggtgatggaagatcacaaactagtggtggtg--gagagagagaaaggactagttaattta-tttttttataattattttaaaagaaaacaa 10227783  T
Q  213 cgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  10227782 cgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaattt 10227715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 26551992 - 26552253
Alignment:
Q  18 gaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtggt 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||| ||| ||| || ||||||||||||||| |||| ||||||||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttttccaccatgaatggtgttggtggt 26552091  T
Q  118 gaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacgatg 217  Q
    ||||||||||||||||||||||| |||||| ||||            |||||||||||||||||        |||||||||||||||||||||||||| |    
T  26552092 gaatggtgatggaagatcacgaactagtggcggtggagagagagagaaaggactagttgattta-tttttttataattattttaaaagaaaacaacgacg 26552190  T
Q  218 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26552191 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaattt 26552253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 19059378 - 19059633
Alignment:
Q  20 aattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtggtga 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||||||| || |||| || |||||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccactatgaatggtggtggtggtga 19059477  T
Q  120 atggtgatggaagatcacgaattagtggtggtg--nnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacgatg 217  Q
    ||||||||||||||||||||| ||||||| |||              ||| ||| |||||||||        ||||||||||||||||||||||||||||    
T  19059478 atggtgatggaagatcacgaactagtggttgtggagagagagagagaaagtactggttgattta-tttttttataattattttaaaagaaaacaacgatg 19059576  T
Q  218 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaa 274  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  19059577 tgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaa 19059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 19059451 - 19059378
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatt 279  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19059451 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 10227907 - 10227973
Alignment:
Q  214 gatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10227907 gatgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 10227973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 28217692 - 28217780
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||| ||||||| |||||||||| |||| |||||||||||||||| |||||| |||||||||||||||| |||| |||||    
T  28217692 aattattttaaaataaaacaatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataattt 28217780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 10227707 - 10227789
Alignment:
Q  11 aaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| || |||||||    
T  10227707 aaaatgagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 10227789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 23346418 - 23346496
Alignment:
Q  15 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| ||||| ||||    
T  23346418 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattttttt 23346496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 26552067 - 26551993
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||    
T  26552067 aaaacaacgacgtgccatattttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaattt 26551993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 23346510 - 23346422
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||| |||| || || ||||||| ||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||    
T  23346510 aattattttaaaataaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaattt 23346422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 48871410 - 48871498
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||| ||||||| || |||  || ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  48871410 aattattttaaaataaaacaatgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaattt 48871498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 26552256 - 26552179
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||| ||||||| || |||||||    
T  26552256 gagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 26552179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 50893055 - 50892966
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||| ||||||| || ||||||| ||||||||||||||||||||| |||||| |||| ||||||| ||| |||| |||||    
T  50893055 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaattt 50892966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 28217528 - 28217607
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 94  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||| ||||| |||||    
T  28217528 aagagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttt 28217607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 28217785 - 28217706
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||| ||||||||||||||||||||  |||||| ||||||||||| |||  |||||||||||| ||||||||||    
T  28217785 aagagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgtttt 28217706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 50893226 - 50893148
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 95  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| ||| ||||||||||||| ||||| ||||||    
T  50893226 gagaaattcttgtgtaggaacgaacctaa-ctatcattattacaaacaacaaattaaaacatgacacatcattttttttc 50893148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 4156892 - 4156969
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 94  Q
    |||||||||||||||||||| |||||||| ||||||| |||||||| |||||| ||||||||||||| ||||| |||||    
T  4156892 gagaaattcttgtgtaggaaggaacctaa-ctatcattcttacaaataataaattaaaacatgacacgtcatttttttt 4156969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 48871247 - 48871324
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 94  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| || ||| ||||||||||||| ||||| |||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaataacaaattaaaacatgacacatcatttttttt 48871324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 7062267 - 7062183
Alignment:
Q  9 taaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 94  Q
    ||||||||||||||| |||||||||||||||||||| |||||||  |||||||||| ||| ||||| ||||||| ||||| |||||    
T  7062267 taaaaaagagaaatttttgtgtaggaacgaacctaa-ctatcatttttacaaacaacaaattaaaatatgacacgtcatttttttt 7062183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 39669230 - 39669319
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||| |||||||  | ||||||| |||||||||||| |||||||| |||||| |||| ||||||| ||| ||||||||||    
T  39669230 taattattttaaaataaaacaataacgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaattt 39669319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 41833966 - 41833877
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||| |||| || || ||||||| |||||||||||||| |||||| ||||||  |||| |||||| ||||||||||||||    
T  41833966 taattattttaaaataaaataatgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaattt 41833877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 48871501 - 48871424
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||||||  ||| ||||||||||    
T  48871501 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgtttt 48871424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 48752657 - 48752586
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcatt 88  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||| ||| ||||||||||||| |||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcatt 48752586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 48871315 - 48871244
Alignment:
Q  214 gatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttcctt 286  Q
    |||||||||| |||||||||||| |||||||| |||||| |||||||||||||||| |||||||||| |||||    
T  48871315 gatgtgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgttcctacacaagaatttctcctt 48871244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 50893158 - 50893228
Alignment:
Q  214 gatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttcct 285  Q
    |||||||||| ||||||||||||||||||||  |||||| |||||||||||||||| |||||||||| ||||    
T  50893158 gatgtgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctcct 50893228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 23346675 - 23346607
Alignment:
Q  25 ttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 94  Q
    |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||  ||||| |||||    
T  23346675 ttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacatgacatgtcatttttttt 23346607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 50892963 - 50893040
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||| |||||||| ||||||| |||  |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  50892963 gagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 50893040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 7062098 - 7062038
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgata 252  Q
    ||||||||||||| ||||||| || ||||||| ||||||||||||||||||||| ||||||    
T  7062098 aattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata 7062038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 48752592 - 48752659
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttcct 285  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||||| || |||||||||| ||||    
T  48752592 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctcct 48752659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 7062195 - 7062257
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||||||| |||| |||||    
T  7062195 gtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaattt 7062257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 42180571 - 42180641
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 87  Q
    ||||||||||||||||||||||||||||| ||| |||  |||||||||| ||| ||||||||||||| ||||    
T  42180571 gagaaattcttgtgtaggaacgaacctaa-ctagcattattacaaacaacaaattaaaacatgacacgtcat 42180641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 286
Target Start/End: Original strand, 42180744 - 42180837
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttcctt 286  Q
    |||||||||||||| |||| || |||||||||| ||||| ||||||||||||||| ||||||  |||| |||||| | |||||||||||| |||||    
T  42180744 taattattttaaaataaaataatgatgtgtcatgttttagtttgttgtttgtaagaatgata-tttagattcgtttc-atacaagaatttctcctt 42180837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 50904992 - 50905070
Alignment:
Q  17 agaaattcttgtgtaggaacgaaccta--atctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||||||||||  || ||||||  |||||||||| ||  ||||||||||||| ||||||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgtttt 50905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 41833874 - 41833951
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||| ||| |||||| ||||| |||||| |||||| |||| ||| ||||||||||||| ||||| ||||    
T  41833874 gagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcattatttt 41833951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 19059633 - 19059565
Alignment:
Q  25 ttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||| |||||||||||| ||| || ||| ||||| ||||||| || |||||||    
T  19059633 ttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgtttt 19059565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 39669321 - 39669245
Alignment:
Q  17 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||| ||||||| |||  |||||| |||||||| || ||| ||||||||||||| | ||||||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgtttt 39669245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 28217595 - 28217533
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| ||||||||||||||||||||| ||||||  ||||||||||||||| ||| ||||||    
T  28217595 gtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaattt 28217533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 41834139 - 41834069
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 87  Q
    ||||||||||||||||||||||||| ||| ||| |||  |||||||||| ||| ||||||||||||| ||||    
T  41834139 gagaaattcttgtgtaggaacgaacataa-ctagcattattacaaacaacaaattaaaacatgacacgtcat 41834069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 42180636 - 42180574
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| ||||||||||||||||||||  ||| || |||||||||||||||| ||||||||||    
T  42180636 gtgtcatgttttaatttgttgtttgtaataatgcta-gttaggttcgttcctacacaagaattt 42180574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 50905080 - 50904994
Alignment:
Q  196 attttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatg--ataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||| ||||||| || ||||||| |||||| |||||||||||||  |||  |||  ||||||||||||||| ||||||||||    
T  50905080 attttaaaataaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaattt 50904994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 23346620 - 23346675
Alignment:
Q  218 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaa 274  Q
    |||||| ||||||||| ||||||||||| |||||| |||||||||||||||| ||||    
T  23346620 tgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 41834074 - 41834136
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| ||||||||||||||||||||  ||| || |||| ||||||||||| ||||||||||    
T  41834074 gtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaattt 41834136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 7062038 - 7062084
Alignment:
Q  47 tatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  7062038 tatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 7062084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 42180805 - 42180759
Alignment:
Q  47 tatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||| ||||||||||| ||||||||||||||||| ||||| ||||    
T  42180805 tatcattcttacaaacaacaaactaaaacatgacacatcattatttt 42180759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 50905113 - 50905158
Alignment:
Q  220 tcatattttaatttgttgtttgtaaggatgataggttaggttcgtt 265  Q
    |||| ||||||||||||||||||||| |||||| ||||| ||||||    
T  50905113 tcatgttttaatttgttgtttgtaagaatgatatgttagattcgtt 50905158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 37994708 - 37994975
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || || ||||||||||||||| |||| ||||||||    
T  37994708 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttttccaccatgaatggtgttggtg 37994807  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacga 215  Q
    |||||||||||||||||||||| || |||||||||||            |||||||||||||||||        ||||||||||||||||||||||||||    
T  37994808 gtgaatggtgatggaagatcaccaactagtggtggtg--gagagagagaaaggactagttgattta-attttttataattattttaaaagaaaacaacga 37994904  T
Q  216 tgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttcctt 286  Q
     ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  37994905 cgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcctt 37994975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 44036811 - 44036950
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttg 112  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||| | ||||||||||| || ||||||||||||||| |||| |||||    
T  44036811 aaagagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttttccaccatgaatggtgttg 44036910  T
Q  113 gtggtgaatggtgatggaagatcacgaattagtggtggtg 152  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  44036911 gtggtgagtggtgatggaagatcacgaactagtggtggtg 44036950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 41539861 - 41539773
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  41539861 aattattttaaaataaaacaacgacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaattt 41539773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 25101823 - 25101746
Alignment:
Q  190 ataattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcc 267  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  25101823 ataattattttaaaagaaaacaacaatgtgtcatattttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 37994972 - 37994895
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||    
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgtttt 37994895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 2814416 - 2814505
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||| ||||||| || ||||||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  2814416 taattatttttaaaaaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaattt 2814505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 2814508 - 2814430
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 94  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||||||||||| |||||||||||    
T  2814508 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttt 2814430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 37994785 - 37994711
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| || |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  37994785 aaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaattt 37994711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 397177 - 397266
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||| ||||||| || ||||||| |||||||||||||||| |||| |||||| |||||||||||| ||| ||||||||||    
T  397177 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaattt 397266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 41540040 - 41539969
Alignment:
Q  10 aaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||||    
T  41540040 aaaaaagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacac 41539969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 44036891 - 44036817
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||||    
T  44036891 aaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaattt 44036817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 14193414 - 14193337
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccta 269  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||  || ||| ||||||||||||||||    
T  14193414 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta 14193337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 14193588 - 14193512
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||| ||||    
T  14193588 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcattttttt 14193512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 397271 - 397192
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||| |||||||||||  |||||| |||| |||||| ||| ||||||||||||| ||||||||||    
T  397271 aagagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgtttt 397192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 41539769 - 41539847
Alignment:
Q  15 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||| ||||||| || |||||||    
T  41539769 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgtttt 41539847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 14193509 - 14193585
Alignment:
Q  203 aagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| || || ||||||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  14193509 aagaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 14193585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 41539963 - 41540031
Alignment:
Q  211 aacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||| ||||||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  41539963 aacgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 41540031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 2814241 - 2814308
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||| ||||||||    
T  2814241 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaatcatgacac 2814308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 397007 - 397072
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||| ||||    
T  397007 gagaaattcttgtgcaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacataacac 397072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 2814319 - 2814246
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||| ||||| |||||||  |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  2814319 aaaaaaacgacgtgtcatgatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 2814246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 14193322 - 14193400
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||| |||| |||||||||||||||  ||| ||  |||||||||| ||| ||||||||||||| ||||||||||    
T  14193322 aagagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgtttt 14193400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 397064 - 397010
Alignment:
Q  225 ttttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||| ||||||||||| |||||| |||||||||||||||  ||||||||||    
T  397064 ttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaattt 397010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 44036985 - 44037018
Alignment:
Q  190 ataattattttaaaagaaaacaacgatgtgtcat 223  Q
    |||||||||||||||||||||||||| |||||||    
T  44036985 ataattattttaaaagaaaacaacgacgtgtcat 44037018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 16115308 - 16115049
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttttccaccataaatggtgttggtg 16115209  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacga 215  Q
    |||||||||||||||||||||||||||||||||||||            ||||    |||||||||        ||||||||||||||||||||||||||    
T  16115208 gtgaatggtgatggaagatcacgaattagtggtggtggagagagagaaaaagg----gttgattta-tttttttataattattttaaaagaaaacaacga 16115114  T
Q  216 tgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||    
T  16115113 cgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaattt 16115049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 42028842 - 42028581
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || || |||||||||||||||||||| ||||||||    
T  42028842 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaatggtgttggtg 42028743  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacga 215  Q
    |||||||||||||||||||||| || |||||||||||            |||||||||||||||||        ||||||||||||||||||||||||||    
T  42028742 gtgaatggtgatggaagatcaccaactagtggtggtg--gagagagagaaaggactagttgattta-attttttataattattttaaaagaaaacaacga 42028646  T
Q  216 tgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
     ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  42028645 cgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaattt 42028581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 7317632 - 7317896
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttg 112  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||| |||||    
T  7317632 aaagagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttttccaccataaatggtgttg 7317731  T
Q  113 gtggtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||            || ||||||||||||||        |||||||||||||||||||| ||    
T  7317732 gtggtgaatggtgatggaagatcacgaattagtggtggtg--gagagagagaaatgactagttgattta-tttttttataattattttaaaagaaaaaaa 7317828  T
Q  213 cgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  7317829 caatgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaattt 7317896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 31860079 - 31860346
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtcattatttttccaccataaatggtgttggtg 31860178  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtg----nnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaaca 211  Q
    ||||||||||||||||||||||||| |||||||||||                ||||||||||| |||||        ||||||||||||||||||||||    
T  31860179 gtgaatggtgatggaagatcacgaactagtggtggtggagagagagagagagaaaggactagttaattta-tttttttataattattttaaaagaaaaca 31860277  T
Q  212 acgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  31860278 acgatgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaattt 31860346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 2059490 - 2059745
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||        | ||||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttttcca--------ggtgttggtg 2059581  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacga 215  Q
    ||||||| |||| ||||||||||||||||||||||||            || ||||||||||||||        ||||||||||||||||||||||||||    
T  2059582 gtgaatgatgatagaagatcacgaattagtggtggtggagagagagagaaatgactagttgatttattttttt-ataattattttaaaagaaaacaacga 2059680  T
Q  216 tgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||    
T  2059681 cgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataattt 2059745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 13279840 - 13280096
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||       | ||||||||||||||| |||  ||||| ||    
T  13279840 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat-------cgttgtttttccaccatgaatagtgttgctg 13279932  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacga 215  Q
    ||||||||||||||||||||||||| |||||||||||            ||||||| |||||||||        ||||||||||||||||||||||||||    
T  13279933 gtgaatggtgatggaagatcacgaactagtggtggtggagggagagagaaaggacttgttgatttattttttt-ataattattttaaaagaaaacaacga 13280031  T
Q  216 tgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
     || |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13280032 cgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 13280096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 7317901 - 7317833
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  7317901 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacac 7317833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 15332928 - 15332849
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  15332928 aagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 15332849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 42028765 - 42028839
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42028765 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 42028839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 36059358 - 36059285
Alignment:
Q  9 taaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||| |||||||||||||    
T  36059358 taaaaaagagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac 36059285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 13280102 - 13280022
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || || |||||||    
T  13280102 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 13280022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 31860352 - 31860272
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| || |||||||    
T  31860352 aaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgtttt 31860272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 42028571 - 42028655
Alignment:
Q  9 taaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| || |||||||    
T  42028571 taaaaatgagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgtttt 42028655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 2059567 - 2059493
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||    
T  2059567 aaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaattt 2059493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 36059278 - 36059348
Alignment:
Q  210 caacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  36059278 caacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 36059348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 31470678 - 31470590
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||| ||||||| || ||||||| ||||||||||||||||||||  |||||| |||||||||||||||| ||||||||||    
T  31470678 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaattt 31470590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 31860145 - 31860082
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  31860145 gtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaattt 31860082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 3671822 - 3671899
Alignment:
Q  17 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 95  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||| ||||||    
T  3671822 agaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacatcattttttttc 3671899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 16115231 - 16115305
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| || ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| |||||    
T  16115231 aaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaattt 16115305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 38086140 - 38086234
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttcctt 286  Q
    ||||||||||||| ||||||| || || |||||||||||||||||||||||||| |||||| |||||||| || |||| |||| ||||| |||||    
T  38086140 aattattttaaaataaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctcctt 38086234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 31470587 - 31470663
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| ||| ||||||||||||| ||||||||||    
T  31470587 gagaaattcttgtgtaggaacgaacctaa-ctatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 31470663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 7317712 - 7317644
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaa 274  Q
    |||||||||| ||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||    
T  7317712 aaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacacaa 7317644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 13279898 - 13279843
Alignment:
Q  225 ttttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  13279898 ttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaattt 13279843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 15332844 - 15332923
Alignment:
Q  201 aaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||| ||||||| || ||||||| ||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||    
T  15332844 aaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaattt 15332923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 2059749 - 2059671
Alignment:
Q  15 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||| ||||| ||||||| || |||||||    
T  2059749 agagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 2059671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 3671889 - 3671824
Alignment:
Q  214 gatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  3671889 gatgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 3671824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 16115046 - 16115123
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||| ||| ||||| ||||||| || |||||||    
T  16115046 gagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 16115123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 38086038 - 38085965
Alignment:
Q  211 aacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttcct 285  Q
    ||||| ||||||| ||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||| ||||    
T  38086038 aacgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctcct 38085965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 38085967 - 38086032
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||||||| ||| |||||||||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaa-ctatcattcttacaaacaacaaattaaaacatgacac 38086032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaa 73  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 31470847 - 31470763
Alignment:
Q  10 aaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 95  Q
    ||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||| ||| ||||  ||||||| ||||| ||||||    
T  31470847 aaaaaggagaaatttttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaataatgacacatcattttttttc 31470763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 31470773 - 31470844
Alignment:
Q  214 gatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttcctt 286  Q
    ||||||||||  |||||||||||||||||||| |||||| |||||||||||||||| |||| ||||| |||||    
T  31470773 gatgtgtcattatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctcctt 31470844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 3671996 - 3672089
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttcct 285  Q
    ||||||||||||| ||||||| || |||| ||||||||||||||| |||||||  ||||||  |||| |||||||||  | |||||||| ||||    
T  3671996 aattattttaaaataaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctcct 3672089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 15330505 - 15330452
Alignment:
Q  226 tttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||    
T  15330505 tttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaagaattt 15330452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 38086231 - 38086154
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||| ||||||||| || |||||||  |||||| ||||||||||| ||| ||||| |||| || ||||||||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgtttt 38086154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 3672087 - 3672010
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||| || ||||||||| ||||| ||||||  ||||||| || ||| ||||| || |||| ||||||||||    
T  3672087 gagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgtttt 3672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 36059247 - 36059276
Alignment:
Q  15 agagaaattcttgtgtaggaacgaacctaa 44  Q
    ||||||||||||||||||||||||||||||    
T  36059247 agagaaattcttgtgtaggaacgaacctaa 36059276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 33022163 - 33022429
Alignment:
Q  15 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggt 114  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||| |||||||    
T  33022163 agagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatggtgttggt 33022262  T
Q  115 ggtgaatggtgatggaagatcacgaattagtggtggtg--nnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaa 212  Q
    |||||||||||||||||||||| ||| |||||||||||              || ||||||||||||||        |||||||||||||||||||||||    
T  33022263 ggtgaatggtgatggaagatcatgaactagtggtggtggagagagagagagaaatgactagttgattta-tttttttataattattttaaaagaaaacaa 33022361  T
Q  213 cgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  33022362 cgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 33022429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 33022241 - 33022167
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  33022241 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataattt 33022167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 21389113 - 21389024
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||| ||||||| || || |||| ||||||||||||||||||||| |||||| |||||||||||||||| | ||||||||    
T  21389113 taattattttaaaataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaattt 21389024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 33022431 - 33022355
Alignment:
Q  17 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||||| || |||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33022355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 21389289 - 21389208
Alignment:
Q  12 aaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 94  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||| |||||    
T  21389289 aaaagataaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcatttttttt 21389208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 7789842 - 7789931
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||  || ||||||| || ||||||| ||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||    
T  7789842 taattattttttaaaaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaattt 7789931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 7789933 - 7789856
Alignment:
Q  17 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 94  Q
    ||||||||||||||||||| ||||||||  |||||| ||||||||||| ||| ||||||||||||| |||||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttt 7789856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 21389021 - 21389098
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||| |||||||||||||||||  |||||| ||||||||||| ||| |||||||||| || ||||||||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgtttt 21389098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 21389220 - 21389282
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  21389220 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 21389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 7789678 - 7789744
Alignment:
Q  27 gtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 94  Q
    |||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||  |||||||||||    
T  7789678 gtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacatgtcattgttttt 7789744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 7789748 - 7789681
Alignment:
Q  201 aaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccta 269  Q
    |||| ||||||| ||  |||||| ||||||||||||||||||||| |||||| ||||||||||||||||    
T  7789748 aaaaaaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttccta 7789681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 28472535 - 28472611
Alignment:
Q  193 attattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccta 269  Q
    ||||||||||||||||| ||  | |||| ||  ||||||||||||||| |||  ||||||  |||||||||||||||    
T  28472535 attattttaaaagaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttccta 28472611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 27072912 - 27073169
Alignment:
Q  15 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||       | ||||||||||||||| |||  ||||| |    
T  27072912 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat-------cgttgtttttccaccatgaatagtgttgct 27073004  T
Q  115 ggtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacg 214  Q
    |||||||||||||||||||||||||| |||||||||||            ||||||| |||||||||        |||||||||||||||||||||||||    
T  27073005 ggtgaatggtgatggaagatcacgaactagtggtggtggagggagagagaaaggacttgttgatttattttttt-ataattattttaaaagaaaacaacg 27073103  T
Q  215 atgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27073104 acgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 27073169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 36274392 - 36274128
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttg 112  Q
    |||||||||||||| |||||||||||| |||| |||||||| |||||||||| ||| ||||||||||||| || ||||||||||||||| |||| |||||    
T  36274392 aaagagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatggtgttg 36274293  T
Q  113 gtggtgaatggtgatggaagatcacgaattagtggtggtg----nnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaa 208  Q
    |||||||||||||||||||||||||||| |||||||||||                ||| |||||||||||||        |||||||||||||||||||    
T  36274292 gtggtgaatggtgatggaagatcacgaactagtggtggtggagagagagagagagaaagaactagttgattta-tttttttataattattttaaaagaaa 36274194  T
Q  209 acaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaa 274  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  36274193 acaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa 36274128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 10598805 - 10599059
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttg 112  Q
    |||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||| || ||||||||||||||| |||| |||||    
T  10598805 aaagggaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatggtgttg 10598904  T
Q  113 gtggtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaa 212  Q
    |||||||||||||||||||||||||||| |||||||||||            || ||||||||||||||        ||||||||||||||||||||       
T  10598905 gtggtgaatggtgatggaagatcacgaactagtggtggtg--gagagagaaaaatgactagttgatttattttttttataattattttaaaagaaaa--- 10598999  T
Q  213 cgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
            ||| |||||||||||||||||||||||||||| |||||||||||| | | ||||||||||    
T  10599000 --------catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaattt 10599059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 33219072 - 33219208
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||  | ||||||||||||||||||||||| ||||||||    
T  33219072 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgtttttccaccataaatggtgttggtg 33219171  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtg 152  Q
    |||||||||||||||||||||| || |||||||||||    
T  33219172 gtgaatggtgatggaagatcaccaactagtggtggtg 33219208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 33214704 - 33214580
Alignment:
Q  15 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggt 114  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||| || ||||||||||||||| |||| |||||||    
T  33214704 agagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatggtgttggt 33214605  T
Q  115 ggtgaatggtgatggaagatcacga 139  Q
    |||||||||||||||||||| ||||    
T  33214604 ggtgaatggtgatggaagatgacga 33214580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 33214536 - 33214446
Alignment:
Q  190 ataattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33214536 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 33214446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 19580483 - 19580571
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||| ||||||| ||  |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  19580483 aattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaattt 19580571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 10598885 - 10598811
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  10598885 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaattt 10598811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 33214442 - 33214520
Alignment:
Q  15 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  33214442 agagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33214520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 33214626 - 33214700
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  33214626 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaattt 33214700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 27073172 - 27073095
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  27073172 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 27073095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 36635410 - 36635499
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||| ||||||| || ||||||| ||||||||||||||||||||  |||||| |||||||||||||||| ||||||||||    
T  36635410 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaattt 36635499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 11651091 - 11651003
Alignment:
Q  192 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||| ||||||| ||| | ||||||||||| |||||||||||||| |||||| ||||||||||||| || ||||||||||    
T  11651091 aattattttaaaataaaacaatgatatatcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaattt 11651003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 33219135 - 33219075
Alignment:
Q  220 tcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33219135 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 33219075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 36274312 - 36274386
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||    
T  36274312 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaattt 36274386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 36635502 - 36635425
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||||||||||||  ||||||  |||||||||| ||| ||||||||||||| ||||||||||    
T  36635502 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 36635425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 19580577 - 19580497
Alignment:
Q  13 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||| |||||||||||||||  |||||| ||||||||||| ||| ||||||||||||  ||||||||||    
T  19580577 aaagagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgtttt 19580497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 27072971 - 27072916
Alignment:
Q  225 ttttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  27072971 ttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaattt 27072916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 36274120 - 36274196
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||||| || |||||||    
T  36274120 gagaaatt-ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 36274196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 36635303 - 36635240
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttt 281  Q
    ||||||| ||||||||||||||||||||  |||||| |||||||||||||||| |||||||||||    
T  36635303 gtgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaatttt 36635240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 36635241 - 36635303
Alignment:
Q  19 aaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    |||||||||||||||||||||||||| |||||||  |||||||||| ||| |||||||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaa-ctatcattgttacaaacaacaaattaaaacatgacac 36635303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 10599062 - 10599000
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatg 78  Q
    ||||||||||||||| | |||||||||||  |||||||||||||||||| ||| |||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacatg 10599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 11651000 - 11651077
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    ||||||||||||| || ||||||||||||  |||||| ||||||||||| ||  ||||| |||| |  ||||||||||    
T  11651000 gagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatgatatatcattgtttt 11651077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 37446 - 37691
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    ||||||||||||||||||||||||||||  ||| ||||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||| ||||||||    
T  37446 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatggtgttggtg 37545  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtgnnnnnnnnnnnnaaggactagttgatttannnnnnnnataattattttaaaagaaaacaacga 215  Q
    |||||||||||||||||||||| || || ||||||||            |||||||||||||||||        ||||||||||||||||||||||||||    
T  37546 gtgaatggtgatggaagatcacaaactaatggtggtg--gagagagagaaaggactagttgattta-tttttttataattattttaaaagaaaacaacga 37642  T
Q  216 tgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgt 264  Q
     ||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  37643 cgtagcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 37523 - 37449
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||| ||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  37523 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaattt 37449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 37691 - 37648
Alignment:
Q  35 acgaacctaatctatcatccttacaaacaataaactaaaacatg 78  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||    
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 37648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 19804797 - 19804933
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatgctgttggtg 115  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||| ||| | ||||| ||||| || ||||||||||||||| |||| ||||||||    
T  19804797 gagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttttccaccatgaatgatgttggtg 19804896  T
Q  116 gtgaatggtgatggaagatcacgaattagtggtggtg 152  Q
    ||||||||||||||||||||||||| |||||||||||    
T  19804897 gtgaatggtgatggaagatcacgaactagtggtggtg 19804933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 40521188 - 40521277
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  40521188 taattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaattt 40521277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 19805585 - 19805675
Alignment:
Q  190 ataattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||    
T  19805585 ataattattttaaaagaaagcaacgacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaattt 19805675  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 7298727 - 7298638
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||| ||||||| || ||||||| ||||||||||||||||||||  |||||| |||||||||||||||| ||||||||||    
T  7298727 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaattt 7298638  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 19804874 - 19804800
Alignment:
Q  206 aaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    |||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  19804874 aaaacaacgatgtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgttcctacacaagaattt 19804800  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 40521280 - 40521203
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  40521280 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgtttt 40521203  T

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Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 28949069 - 28948991
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 95  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||| ||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacatgacacgtcattttttttc 28948991  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 7298635 - 7298712
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||||||||||||||||||||||||||  ||||||  |||||||||| ||| ||||||||||||| ||||||||||    
T  7298635 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 7298712  T

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Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 7298905 - 7298835
Alignment:
Q  11 aaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||| ||||    
T  7298905 aaaaagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacataacac 7298835  T

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Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 40521081 - 40521019
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  40521081 gtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 40521019  T

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Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 19805682 - 19805612
Alignment:
Q  12 aaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| ||| || ||| |||||||||||||    
T  19805682 aaaagagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacac 19805612  T

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Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 40521014 - 40521086
Alignment:
Q  14 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 87  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||| ||||||| ||||    
T  40521014 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaatatgacacgtcat 40521086  T

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Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 16979681 - 16979604
Alignment:
Q  16 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 94  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||| || ||| ||||||||||||| ||||| |||||    
T  16979681 gagaaattcttgtgtaggaacgaatctaa-ctatcattcttacaaataacaaattaaaacatgacacgtcatttttttt 16979604  T

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Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 46568022 - 46567957
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttc 283  Q
    ||||||| ||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||    
T  46568022 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaatttttc 46567957  T

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Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 46568130 - 46568196
Alignment:
Q  191 taattattttaaaagaaaacaacgatgtgtcatattttaatttgttgtttgtaaggatgataggtta 257  Q
    |||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||| |||||| ||||    
T  46568130 taattatttttaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgtta 46568196  T

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Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 46567960 - 46568028
Alignment:
Q  19 aaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcatt 88  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||| ||| ||||||||||||| |||||    
T  46567960 aaattcttgtgtaggaacgaacttaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcatt 46568028  T

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Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 7298843 - 7298897
Alignment:
Q  225 ttttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  7298843 ttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 7298897  T

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Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 16979616 - 16979691
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttccttaaaaaat 293  Q
    ||||||| |||||||||||| |||||||| |||||| ||||| |||||||||| |||||||||| || ||| |||||    
T  16979616 gtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctcattataaaat 16979691  T

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Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 28949004 - 28949071
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaatttttcct 285  Q
    ||||||| ||||||||| ||||||||||| |||||| |||||||||||||||| |||| ||||| ||||    
T  28949004 gtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctcct 28949071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 46568191 - 46568145
Alignment:
Q  47 tatcatccttacaaacaataaactaaaacatgacacttcattgtttt 93  Q
    |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  46568191 tatcattcttacaaacaacaaattaaaacatgacacatcattgtttt 46568145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 15841 - 15913
Alignment:
Q  10 aaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 82  Q
    |||| ||||||||||||||||||||||||||||||  |||||| ||||||||||| ||| |||||||||||||    
T  15841 aaaatagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 15913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 15913 - 15850
Alignment:
Q  217 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctatacaagaattt 280  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  15913 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaattt 15850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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