View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0631_low_1 (Length: 910)
Name: NF0631_low_1
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0631_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 2e-82; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 239 - 398
Target Start/End: Original strand, 5731542 - 5731701
Alignment:
| Q |
239 |
aaaatcgtaccgataagctattaatgtgttgcttttcatccctaagttagcttctgttacaaaaacgtacatgccgctgacgggggatgttgtggcagtg |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5731542 |
aaaatcgtaccgataagctattaatgtgttgcttttcatccctaagttagcttctgttacaaaaacgtacatgccgttgacgggggatgttgtggcagtg |
5731641 |
T |
|
| Q |
339 |
ggtaacgtggcagacaatgctgacgtgacaaactggattataagtcacacatggagaggg |
398 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5731642 |
ggtaacgtggcagacaatgctgacgtgacaaactggattataagtcacacatggagaggg |
5731701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 700 - 906
Target Start/End: Original strand, 5731805 - 5732007
Alignment:
| Q |
700 |
tcttcaacaacttcatccaccatcatcaaaaatccagaaatttatcatcttcaaacccaaatccataaattcaaaaatatccaactgaaacacgtagaat |
799 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5731805 |
tcttcaacaacttcatccaccatcatcaaaaatccagaaatttatcatcttcaaacccaaatccataaattcaaaaatatccaactgaaacacgtagaat |
5731904 |
T |
|
| Q |
800 |
caaaccaaactaattaatttgcactagataaaattctgcttctgcctct--gtccctaatttccacccttcttcttcctcaactcaaaccttccctcttc |
897 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||| |||||||||||||||||||||||||||||| |
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| T |
5731905 |
caaaccaaactaattaatttgcactagataaaattctgcttctgcttcttcttccc---ttttcacc---cttcttcctcaactcaaaccttccctcttc |
5731998 |
T |
|
| Q |
898 |
atctcactc |
906 |
Q |
| |
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|||||||| |
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| T |
5731999 |
gtctcactc |
5732007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 5731344 - 5731512
Alignment:
| Q |
41 |
aaatggacaaattaaacttgagttgaacatgaaagtgatatataattgcggggattggatagtttaagttagggttaagaagttggaggttcaggattca |
140 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |
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| T |
5731344 |
aaatggacaaattaaacttgagttgaacatgaaagtgatatataattgcggggattgggtagtttaaattagggttaaggagttggaggttcaggattca |
5731443 |
T |
|
| Q |
141 |
agttataataaggagaaaaaataacataagaatggcttaaatatgcaagtttctctataatttggcgta |
209 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
5731444 |
agtcataataaggagaaaaaataacataagaatggcttaaatatgtaagtttctctataatttgacgta |
5731512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 517 - 598
Target Start/End: Original strand, 18182291 - 18182372
Alignment:
| Q |
517 |
agaatactattttgatcgatttatcaaataatttttatcaataaaacaatatcgtcattttaattcgtatagtcaaattctc |
598 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18182291 |
agaatactattttgatcgatttatcaaataatttttatcaataaaacaatatcgtcattttaattcgtatagtcaaattctc |
18182372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 650 - 690
Target Start/End: Original strand, 18182424 - 18182464
Alignment:
| Q |
650 |
aagaataaataataaatagaattcatatttttatctaatct |
690 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18182424 |
aagaataaataataaatagaattcatattttcatctaatct |
18182464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 2e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 239 - 398
Target Start/End: Original strand, 18655312 - 18655471
Alignment:
| Q |
239 |
aaaatcgtaccgataagctattaatgtgttgcttttcatccctaagttagcttctgttacaaaaacgtacatgccgctgacgggggatgttgtggcagtg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18655312 |
aaaatcgtaccgataagctattaatgtgttgcttttcatccctaagttagcttctgttacaaaaacgtacatgccgttgacgggggatgttgtggcagtg |
18655411 |
T |
|
| Q |
339 |
ggtaacgtggcagacaatgctgacgtgacaaactggattataagtcacacatggagaggg |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18655412 |
ggtaacgtggcagacaatgctgacgtgacaaactggattataagtcacacatggagaggg |
18655471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 700 - 906
Target Start/End: Original strand, 18655575 - 18655777
Alignment:
| Q |
700 |
tcttcaacaacttcatccaccatcatcaaaaatccagaaatttatcatcttcaaacccaaatccataaattcaaaaatatccaactgaaacacgtagaat |
799 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18655575 |
tcttcaacaacttcatccaccatcatcaaaaatccagaaatttatcatcttcaaacccaaatccataaattcaaaaatatccaactgaaacacgtagaat |
18655674 |
T |
|
| Q |
800 |
caaaccaaactaattaatttgcactagataaaattctgcttctgcctct--gtccctaatttccacccttcttcttcctcaactcaaaccttccctcttc |
897 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||| |||||||||||||||||||||||||||||| |
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| T |
18655675 |
caaaccaaactaattaatttgcactagataaaattctgcttctgcttcttcttccc---ttttcacc---cttcttcctcaactcaaaccttccctcttc |
18655768 |
T |
|
| Q |
898 |
atctcactc |
906 |
Q |
| |
|
|||||||| |
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|
| T |
18655769 |
gtctcactc |
18655777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 18655114 - 18655282
Alignment:
| Q |
41 |
aaatggacaaattaaacttgagttgaacatgaaagtgatatataattgcggggattggatagtttaagttagggttaagaagttggaggttcaggattca |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |
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| T |
18655114 |
aaatggacaaattaaacttgagttgaacatgaaagtgatatataattgcggggattgggtagtttaaattagggttaaggagttggaggttcaggattca |
18655213 |
T |
|
| Q |
141 |
agttataataaggagaaaaaataacataagaatggcttaaatatgcaagtttctctataatttggcgta |
209 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
18655214 |
agtcataataaggagaaaaaataacataagaatggcttaaatatgtaagtttctctataatttgacgta |
18655282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 18160931 - 18160878
Alignment:
| Q |
345 |
gtggcagacaatgctgacgtgacaaactggattataagtcacacatggagaggg |
398 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
18160931 |
gtggcagacgacgctgacgtgacaaactggatgataagtcacacagtgagaggg |
18160878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 18161009 - 18160956
Alignment:
| Q |
259 |
ttaatgtgttgcttttcatccctaag-ttagcttctgttacaaaaacgtacatg |
311 |
Q |
| |
|
||||||| |||| |||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
18161009 |
ttaatgttttgcatttcatccctcatattagcttctgttacaaaaacgtacatg |
18160956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 330 - 372
Target Start/End: Complemental strand, 32882610 - 32882568
Alignment:
| Q |
330 |
gtggcagtgggtaacgtggcagacaatgctgacgtgacaaact |
372 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
32882610 |
gtggcagtgtctaacgtggcagacgatgctgacgtgacaaact |
32882568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 776
Target Start/End: Complemental strand, 51300049 - 51300004
Alignment:
| Q |
731 |
atccagaaatttatcatcttcaaacccaaatccataaattcaaaaa |
776 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| ||||||||||| |
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|
| T |
51300049 |
atccagaaattcatcactttcaaacccaaatccagaaattcaaaaa |
51300004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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