View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0631_low_10 (Length: 392)

Name: NF0631_low_10
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0631_low_10
NF0631_low_10
[»] chr5 (4 HSPs)
chr5 (19-381)||(14357320-14357682)
chr5 (18-72)||(40815572-40815626)
chr5 (18-72)||(30915794-30915848)
chr5 (25-65)||(30915872-30915912)
[»] chr7 (5 HSPs)
chr7 (16-381)||(29657305-29657676)
chr7 (18-72)||(22794086-22794140)
chr7 (18-48)||(4973822-4973852)
chr7 (89-129)||(7147577-7147617)
chr7 (18-54)||(32893746-32893782)
[»] chr1 (3 HSPs)
chr1 (18-138)||(49619511-49619624)
chr1 (18-130)||(40778688-40778794)
chr1 (18-52)||(40779411-40779445)
[»] chr8 (2 HSPs)
chr8 (18-130)||(16497127-16497232)
chr8 (18-71)||(11080778-11080831)
[»] chr4 (7 HSPs)
chr4 (174-381)||(21731062-21731277)
chr4 (18-71)||(5547210-5547263)
chr4 (18-82)||(37642274-37642338)
chr4 (326-381)||(5547328-5547383)
chr4 (18-57)||(54373769-54373808)
chr4 (18-54)||(49923530-49923566)
chr4 (20-54)||(49922825-49922859)
[»] scaffold0034 (1 HSPs)
scaffold0034 (18-113)||(98356-98444)
[»] chr2 (2 HSPs)
chr2 (19-72)||(20921830-20921883)
chr2 (24-83)||(12365769-12365828)
[»] chr6 (2 HSPs)
chr6 (18-71)||(682572-682625)
chr6 (97-133)||(682643-682679)
[»] scaffold2117 (1 HSPs)
scaffold2117 (24-144)||(203-317)
[»] scaffold0171 (1 HSPs)
scaffold0171 (18-135)||(28943-29053)


Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 14357682 - 14357320
Alignment:
Q  19 cacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactttct 118  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14357682 cacaaaatcaaacatttaaatttataattaacaccatcaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaacttttt 14357583  T
Q  119 atcaccaaaatccttccctttcaccaaaagacatagagggaaggtgtttgatgttaggaaaataactagtgaaagccatagcagacagcgcatcagcagc 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14357582 atcaccaaaatcattccctttcaccaaaagacatagagggaaggtgtttgatgttaggaaaataactagtgaaagccatagcagacagcgcatcagcagc 14357483  T
Q  219 gaaaataaattgaaaaatacgcagagaaaggccaccagcagtatcgggcatgccttgaatatccttcatcctcactatttcgttcagcaatatcaacacc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14357482 gaaaataaattgaaaaatacgcagagaaaggccaccagcagtatcgggcatgccttgaatatccttcatcctcactatttcgttcagcaacatcaacacc 14357383  T
Q  319 accatcgccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcat 381  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  14357382 accatcgccatcagtagttggaacttcttcaactgggtgaattgaagcatggctcaccttcat 14357320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 40815572 - 40815626
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaatc 72  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40815572 ccacaaaatcaaacatttaaatttataattaacaccaccaccatcattcaaaatc 40815626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 30915794 - 30915848
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaatc 72  Q
    ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  30915794 ccacataatcaaacctttaaatttataattaacaccaccaccatcattcaaaatc 30915848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 30915912 - 30915872
Alignment:
Q  25 atcaaacatttaaatttataattaacaccaccaacatcatt 65  Q
    ||||||| ||||||||||||||||||| ||||| |||||||    
T  30915912 atcaaacctttaaatttataattaacatcaccaccatcatt 30915872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 381
Target Start/End: Original strand, 29657305 - 29657676
Alignment:
Q  16 atccacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactt 115  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29657305 atccaaaaaatcaaacatttaaatttataattaacaccaccaccatcattcaaaatcggatcatcaaagtccaaaactcattaactccaaaaagaaactt 29657404  T
Q  116 tctatcaccaaaatccttccctttcaccaaaagacatagagggaaggtgtttgatgttaggaaaataactagtgaaagccatagcagacagcgcatcagc 215  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |    
T  29657405 tctatcaccaaaatccttccctttcaccaaaagatatagagggaaggtgtttgatgttacgaaaataactagtgaaagccataacagacagcgcatcaac 29657504  T
Q  216 agcgaaaataaattgaaaaatacgcagagaaaggccaccagcagtatcgggcatgccttgaatatccttcatcctcactatttcgttcagcaatatcaac 315  Q
    |  ||| |||||||| |||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||| | ||||    
T  29657505 aaagaatataaattgcaaaatacgcagataaaggccaccaacactattgggcatgccttgaatatccttcatcctcactattttgttcagcaacaacaac 29657604  T
Q  316 ac------caccatcgccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcat 381  Q
    ||      ||||||| ||||||||||||||||||||||||| |  ||||||||||||||||||||| |||||    
T  29657605 accaccatcaccatcaccatcagtagttggaacttcttcaatttggtgaattgaagcatggctcacattcat 29657676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 22794140 - 22794086
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaatc 72  Q
    ||||| |||||||| |||||||||||||||||||||||||  |||||||||||||    
T  22794140 ccacataatcaaacctttaaatttataattaacaccaccacaatcattcaaaatc 22794086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 4973852 - 4973822
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataatta 48  Q
    |||||||||||||||||||||||||||||||    
T  4973852 ccacaaaatcaaacatttaaatttataatta 4973822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 7147617 - 7147577
Alignment:
Q  89 aaactcattaactccaaaaagaaactttctatcaccaaaat 129  Q
    |||| ||||||||||||||||||||||||  ||||||||||    
T  7147617 aaacccattaactccaaaaagaaactttcattcaccaaaat 7147577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 32893746 - 32893782
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacacca 54  Q
    |||||||||| || |||||||||||||||||||||||    
T  32893746 ccacaaaatcgaaaatttaaatttataattaacacca 32893782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 49619624 - 49619511
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactttc 117  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||       ||||||| |||||||||||||| |||||||||    
T  49619624 ccacaaaatcaaacatttaaatttagaattaacaccaccaccatcattcaaaatcagatca-------ccaaaacccattaactccaaaacgaaactttc 49619532  T
Q  118 tatcaccaaaatccttccctt 138  Q
    | |||||||||||||||||||    
T  49619531 tttcaccaaaatccttccctt 49619511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 40778688 - 40778794
Alignment:
Q  18 ccacaaaatcaaacatttaaatttat--aattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactt 115  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||||       ||||||| |||||||||||||||| ||||     
T  40778688 ccacaaaatcaaacatttaaatttataaaattaacaccaccaccatcattcaaaatcggatca-------ccaaaacccattaactccaaaaag-aacta 40778779  T
Q  116 tctatcaccaaaatc 130  Q
    |||||||||||||||    
T  40778780 tctatcaccaaaatc 40778794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 40779445 - 40779411
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacac 52  Q
    |||||||||||||||||||||||||||||||||||    
T  40779445 ccacaaaatcaaacatttaaatttataattaacac 40779411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 16497127 - 16497232
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataa-ttaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaacttt 116  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||       |||||| ||| |||||||||||| ||||||    
T  16497127 ccacaaaatcaaacatttaaatttataaattaacaccaccaccatcattcaaaatcggatcat-------caaaacccatcaactccaaaaag-aacttt 16497218  T
Q  117 ctatcaccaaaatc 130  Q
    ||||||||||||||    
T  16497219 ctatcaccaaaatc 16497232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 11080831 - 11080778
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaat 71  Q
    ||||| |||||||| |||||||||||||||||||||||||  ||||||||||||    
T  11080831 ccacataatcaaacctttaaatttataattaacaccaccactatcattcaaaat 11080778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 381
Target Start/End: Complemental strand, 21731277 - 21731062
Alignment:
Q  174 aggaaaataactagtgaaagccatagcagacagcgcatcagcagcgaaaataaattgaaaaatacgcagagaaaggccaccagcagtatcgggcatgcct 273  Q
    |||||||| ||| ||| |||||||| |||| |||||| |||| || |||| ||| ||  ||| ||||| || ||||||||||  |||| | |||||||||    
T  21731277 aggaaaatcactggtggaagccataacagatagcgcagcagccgcaaaaacaaactgtgaaacacgcaaagcaaggccaccaatagtaccaggcatgcct 21731178  T
Q  274 tgaatatccttcatcctcactat--------------ttcgttcagcaatatcaacaccaccatcgccatcagtagttggaacttcttcaactgagtgaa 359  Q
    |||||||||||||||||||| ||              || ||||||||| | |||||||||||||      ||||||||||||||||||||||| |||||    
T  21731177 tgaatatccttcatcctcaccataggaacattcacgttttgttcagcaacagcaacaccaccatc------agtagttggaacttcttcaactgggtgaa 21731084  T
Q  360 ttgaagcatggctcacgttcat 381  Q
    ||||||||||||||||||||||    
T  21731083 ttgaagcatggctcacgttcat 21731062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 5547210 - 5547263
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaat 71  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  5547210 ccacataatcaaacctttaaatttataattaacaccaccaccatcattcaaaat 5547263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 37642338 - 37642274
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaa 82  Q
    ||||| |||||||| |||||||||||||| |||||||||| |||||||||||||  |||||||||    
T  37642338 ccacataatcaaacctttaaatttataatcaacaccaccaccatcattcaaaattggatcatcaa 37642274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 5547328 - 5547383
Alignment:
Q  326 ccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcat 381  Q
    |||||| ||||| |||||| ||||||||  ||||||||||||||||||||||||||    
T  5547328 ccatcaatagttcgaactttttcaactggatgaattgaagcatggctcacgttcat 5547383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 54373808 - 54373769
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacaccacca 57  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  54373808 ccacaaaatcaaacatttaaatttataactaacaccacca 54373769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 49923566 - 49923530
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacacca 54  Q
    ||||||||||||||||||||||||| |||||||||||    
T  49923566 ccacaaaatcaaacatttaaatttaaaattaacacca 49923530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 49922825 - 49922859
Alignment:
Q  20 acaaaatcaaacatttaaatttataattaacacca 54  Q
    |||||||||||||||||||||||||||||| ||||    
T  49922825 acaaaatcaaacatttaaatttataattaagacca 49922859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 98356 - 98444
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaac 113  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||       ||||||| ||||||||||||||||||||    
T  98356 ccacaaaattaaacatttaaatttataattaacaccaccaccatcattcaaaatcggatca-------ccaaaacccattaactccaaaaagaaac 98444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 20921830 - 20921883
Alignment:
Q  19 cacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaatc 72  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  20921830 cacaaagtcaaacatttaaatttataattaacaccaccaccatcattcaaaatc 20921883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 12365828 - 12365769
Alignment:
Q  24 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaa 83  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  12365828 aatcaaacctttaaatttataattaacaccaccaccatcattcaaaatcggatcaccaaa 12365769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 682572 - 682625
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaat 71  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  682572 ccacataatcaaacctttaaatttataattaacaccaccaccatcattcaaaat 682625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 682643 - 682679
Alignment:
Q  97 taactccaaaaagaaactttctatcaccaaaatcctt 133  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  682643 taactccaaaaagaaattttctctcaccaaaatcctt 682679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2117 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold2117
Description:

Target: scaffold2117; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 317 - 203
Alignment:
Q  24 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactttctatcac 123  Q
    ||||||||  |||||| ||||||||||||||| | |||||| ||||||  |||||       |||||||||||| |||||||||||||||||| | ||||    
T  317 aatcaaacccttaaatctataattaacaccacaaccatcatccaaaattggatca-------ccaaaactcattcactccaaaaagaaactttttctcac 225  T
Q  124 caaaatccttcc-ctttcacca 144  Q
    ||||| |||||| |||||||||    
T  224 caaaacccttcctctttcacca 203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 29053 - 28943
Alignment:
Q  18 ccacaaaatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactttc 117  Q
    ||||| |||||||| ||||||| || |||||||||||| | |||||| ||||||  |||||       ||||||| |||| |||||||||||||||||||    
T  29053 ccacataatcaaacctttaaatctacaattaacaccacaaccatcatccaaaattggatca-------ccaaaacccattcactccaaaaagaaactttc 28961  T
Q  118 tatcaccaaaatccttcc 135  Q
      ||||| ||||||||||    
T  28960 attcacccaaatccttcc 28943  T

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