View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0631_low_11 (Length: 364)

Name: NF0631_low_11
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0631_low_11
NF0631_low_11
[»] chr6 (21 HSPs)
chr6 (29-291)||(25485021-25485283)
chr6 (33-291)||(26144831-26145089)
chr6 (35-291)||(25512855-25513111)
chr6 (33-291)||(26057883-26058143)
chr6 (33-291)||(26077853-26078113)
chr6 (35-291)||(25546946-25547204)
chr6 (35-291)||(25581687-25581943)
chr6 (54-291)||(27602647-27602889)
chr6 (53-291)||(26657969-26658215)
chr6 (53-291)||(26763940-26764186)
chr6 (145-291)||(26637647-26637792)
chr6 (145-291)||(26743613-26743758)
chr6 (109-185)||(26825872-26825949)
chr6 (102-186)||(26850704-26850789)
chr6 (109-186)||(26863650-26863728)
chr6 (212-291)||(25076008-25076087)
chr6 (234-291)||(27681163-27681220)
chr6 (234-291)||(27704141-27704198)
chr6 (215-291)||(26886266-26886342)
chr6 (54-177)||(26961070-26961194)
chr6 (215-291)||(27696515-27696591)
[»] chr1 (2 HSPs)
chr1 (124-185)||(28125730-28125792)
chr1 (124-186)||(28130767-28130830)
[»] chr4 (7 HSPs)
chr4 (234-291)||(18677520-18677577)
chr4 (234-291)||(18697363-18697420)
chr4 (234-290)||(18653439-18653495)
chr4 (234-290)||(18687576-18687632)
chr4 (109-169)||(18697531-18697591)
chr4 (234-291)||(18722034-18722091)
chr4 (234-291)||(18729456-18729513)
[»] chr2 (1 HSPs)
chr2 (54-169)||(17991277-17991395)
[»] chr8 (1 HSPs)
chr8 (109-169)||(22023283-22023343)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 291
Target Start/End: Original strand, 25485021 - 25485283
Alignment:
Q  29 aattacttttctggggatcctgggcatcttccaagtagtttgagatattggaaatggttaagttgtcctttgaagtctctatcttgtatttcgagcaagg 128  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  25485021 aattacttttctgggggtcctgggcatcttccaagtagtttgagatattggaaatggataagttgtcctttgaagtctctttcttgtatttcgagcaagg 25485120  T
Q  129 caagtgaaataagttcatttttcaattgtgtatattgataattcactattagattataattttaatttcaacttatttatttgttttttatgcaggagtt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || ||| |||||||||||||||||    
T  25485121 caagtgaaataagttcatttttcaattgtgtatattgataattcactattagattataattttaatttcaattttattttttattttttatgcaggagtt 25485220  T
Q  229 caaatatatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    ||| |||||||||||||||||||| ||   || |  || ||||||||||||||||||||||||    
T  25485221 caactatatgaaagtcttgacattggatttttgtgaatatttaacccatatacccgatgtctc 25485283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 291
Target Start/End: Original strand, 26144831 - 26145089
Alignment:
Q  33 acttttctggggatcctgggcatcttccaagtagtttgagatattggaaatggttaagttgtcctttgaagtctctatcttgtatttcgagcaaggcaag 132  Q
    |||||||  ||| ||||||| |||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||    
T  26144831 acttttcaaggggtcctgggtatcttccaagtagtttgagatattggaaatggatattctgtcctttgaagtctctatcttgtatttcgagcaaggcaag 26144930  T
Q  133 tgaaataagttcatttttcaattgtgtatattgataattcactattagattataattttaatttcaacttatttatttgttttttatgcaggagttcaaa 232  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  26144931 tgaaataagttcatttttcaattgtgtatattgataattctctattagattataattttaatttcagcttatttatttgttttttatgcaggagttcaac 26145030  T
Q  233 tatatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    ||||||||||||||||||||  || |||||| || ||||||||||||||||||||||||    
T  26145031 tatatgaaagtcttgacattgaactattctcgatatttaacccatatacccgatgtctc 26145089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 35 - 291
Target Start/End: Original strand, 25512855 - 25513111
Alignment:
Q  35 ttttctggggatcctgggcatcttccaagtagtttgagatattggaaatggttaagttgtcctttgaagtctctatcttgtatttcgagcaaggcaagtg 134  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    |||||||||| | |||||||||||||||| ||||||||||||||    
T  25512855 ttttctggggatcctgggtatcttccaagtagtttgagatattggaaatggtgtgtttgtcctttggaatctctatcttgtattttgagcaaggcaagtg 25512954  T
Q  135 aaataagttcatttttcaattgtgtatattgataattcactattagattataattttaatttcaacttatttatttgttttttatgcaggagttcaaata 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25512955 aaataagttcatttttcaattgtgtatattgataattcactattagattttaattttaatttcaacttatttatttgttttttatgcaggagttcaacta 25513054  T
Q  235 tatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    ||||||||||||||||||  |   || |  || ||||||||||||||||||||||||    
T  25513055 tatgaaagtcttgacattgaatttttgtgaatatttaacccatatacccgatgtctc 25513111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 33 - 291
Target Start/End: Original strand, 26057883 - 26058143
Alignment:
Q  33 acttttctggggatcctgggcatcttccaagtagtttgagatattggaaatggttaagttgtcctttgaagtctctatcttgtatttcgagcaaggcaag 132  Q
    |||||||  ||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  26057883 acttttcaaggggtcctgggtatcttccaagtagtttgagatattggaaatggataagtagtcctttgaagtctctatcttgtatttcgagcaaggcaag 26057982  T
Q  133 tgaaataagttcatttttcaattgtgtatattgataattcactattagattataattttaatttcaacttattt-atttg-ttttttatgcaggagttca 230  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||    
T  26057983 tgaaataggttcatttttcaattgtgtatattgataattcactattagattataattttcatttcaacttatttaatttgtttttttatgaaggagttca 26058082  T
Q  231 aatatatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    | |||||||||||  ||||||| |||  ||||| || ||||||||||||||||||||||||    
T  26058083 actatatgaaagttatgacattggacggttctcaatatttaacccatatacccgatgtctc 26058143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 33 - 291
Target Start/End: Original strand, 26077853 - 26078113
Alignment:
Q  33 acttttctggggatcctgggcatcttccaagtagtttgagatattggaaatggttaagttgtcctttgaagtctctatcttgtatttcgagcaaggcaag 132  Q
    |||||||  ||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  26077853 acttttcaaggggtcctgggtatcttccaagtagtttgagatattggaaatggataagtagtcctttgaagtctctatcttgtatttcgagcaaggcaag 26077952  T
Q  133 tgaaataagttcatttttcaattgtgtatattgataattcactattagattataattttaatttcaacttattt-atttg-ttttttatgcaggagttca 230  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||    
T  26077953 tgaaataggttcatttttcaattgtgtatattgataattcactattagattataattttcatttcaacttatttaatttgtttttttatgaaggagttca 26078052  T
Q  231 aatatatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    | |||||||||||  ||||||| |||  ||||| || ||||||||||||||||||||||||    
T  26078053 actatatgaaagttatgacattggacggttctcaatatttaacccatatacccgatgtctc 26078113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 35 - 291
Target Start/End: Original strand, 25546946 - 25547204
Alignment:
Q  35 ttttctggggatcctgggcatcttccaagtagtttgagatattggaaatggttaagttgtcctttgaagtctctatcttgtatttcgagcaaggcaagtg 134  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||  |  ||||||||||||||||| ||||||||||||||||||||||||||    
T  25546946 ttttctgggggtcctgggtatcttccaagtagtttgagatattggaaatggagattttgtcctttgaagtctccatcttgtatttcgagcaaggcaagtg 25547045  T
Q  135 aaataagttcatttttcaattgtgtatattgataattcactattagat--tataattttaatttcaacttatttatttgttttttatgcaggagttcaaa 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| || |||||||||||||||| ||||||||||||||||||||     
T  25547046 aaataagttcatttttcaattgtgtatattgataattcactattagattatataatttaaacttcaacttatttatttattttttatgcaggagttcaac 25547145  T
Q  233 tatatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    |||||||||||||||| ||| || | || |  || ||||||||||||||| ||||||||    
T  25547146 tatatgaaagtcttgatattggatctttgtgaatatttaacccatatacctgatgtctc 25547204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 35 - 291
Target Start/End: Original strand, 25581687 - 25581943
Alignment:
Q  35 ttttctggggatcctgggcatcttccaagtagtttgagatattggaaatggttaagttgtcctttgaagtctctatcttgtatttcgagcaaggcaagtg 134  Q
    |||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||  || |  ||| |||||||| |||||||||| ||||||||||||||    
T  25581687 ttttctgggggtcctgggtatcttccaagtagtttgagatatttggaatggatagattatgatttcaagtctctgtcttgtattttgagcaaggcaagtg 25581786  T
Q  135 aaataagttcatttttcaattgtgtatattgataattcactattagattataattttaatttcaacttatttatttgttttttatgcaggagttcaaata 234  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25581787 aaataagttcatttttcaattgtgtatattgataattcattattagattataattttaatttcaacttatttatttgttttttatgcaggagttcaacta 25581886  T
Q  235 tatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    |||||||||||||| ||| ||  ||  | ||  ||||||||||||||||||||||||    
T  25581887 tatgaaagtcttgaaattggattatagttcagatttaacccatatacccgatgtctc 25581943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 54 - 291
Target Start/End: Complemental strand, 27602889 - 27602647
Alignment:
Q  54 atcttccaagtagtttgagatattggaaatggttaagttgtcctttgaagtctctatc---ttgtatttcgagcaaggcaagtgaaataagttcattttt 150  Q
    ||||||||||||||||||||| ||| ||||||    ||||||||| ||||||||||||   |||||||| || ||||||||||||||||| |||||||||    
T  27602889 atcttccaagtagtttgagattttgcaaatggaatggttgtccttcgaagtctctatcatcttgtattttgaacaaggcaagtgaaataaattcattttt 27602790  T
Q  151 caattgtgtatattgataattcactattagattataattttaatttcaacttatttatttg--ttttttatgcaggagttcaaatatatgaaagtcttga 248  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||||||  |||||||||||| ||||||| ||||||||||| ||||    
T  27602789 caattgtgtatatttataattcactattagattataattttaattttagcttaattatttgtattttttatgcagaagttcaactatatgaaagtattga 27602690  T
Q  249 catttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
     |||  ||  || || || ||||||||| ||||||||||||||    
T  27602689 aattgaacagttgtcaatatttaacccaaatacccgatgtctc 27602647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 53 - 291
Target Start/End: Original strand, 26657969 - 26658215
Alignment:
Q  53 catcttccaagtagtttgagatattggaaatggttaagttgtcctttgaagtctctatc---ttgtatttcgagcaaggcaagtgaaataagttcatttt 149  Q
    |||||||||||||||||||||| || |||||||  | | ||||||| ||||||||||||   ||||||||| | ||||||||||||||||||||||||||    
T  26657969 catcttccaagtagtttgagatttttgaaatggaaaggatgtccttcgaagtctctatcatcttgtatttcaaacaaggcaagtgaaataagttcatttt 26658068  T
Q  150 tcaattgtgtatattgat-aattcactattagattataattttaatttcaact----tatttatttgttttttatgcaggagttcaaatatatgaaagtc 244  Q
    || || ||||||||| || |||||| ||||| ||||||||| |||||  || |    | || | || ||||||||||||||||||||  |||||||| ||    
T  26658069 tcgatcgtgtatatttataaattcagtattatattataattataattataattataattttaacttcttttttatgcaggagttcaataatatgaaattc 26658168  T
Q  245 ttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
     ||||||| ||| ||| |  || |||||||||||||||| |||||||    
T  26658169 atgacattggacgattgtgaatatttaacccatatacccaatgtctc 26658215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 53 - 291
Target Start/End: Original strand, 26763940 - 26764186
Alignment:
Q  53 catcttccaagtagtttgagatattggaaatggttaagttgtcctttgaagtctctatc---ttgtatttcgagcaaggcaagtgaaataagttcatttt 149  Q
    |||||||||||||||||||||| || |||||||  | | ||||||| ||||||||||||   ||||||||| | ||||||||||||||||||||||||||    
T  26763940 catcttccaagtagtttgagatttttgaaatggaaaggatgtccttcgaagtctctatcatcttgtatttcaaacaaggcaagtgaaataagttcatttt 26764039  T
Q  150 tcaattgtgtatattgat-aattcactattagattataattttaatttcaact----tatttatttgttttttatgcaggagttcaaatatatgaaagtc 244  Q
    || || ||||||||| || |||||| ||||| ||||||||| |||||  || |    | || | || ||||||||||||||||||||  |||||||| ||    
T  26764040 tcgatcgtgtatatttataaattcagtattatattataattataattataattataattttaacttcttttttatgcaggagttcaataatatgaaattc 26764139  T
Q  245 ttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
     ||||||| ||| ||| |  || |||||||||||||||| |||||||    
T  26764140 atgacattggacgattgtgaatatttaacccatatacccaatgtctc 26764186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 291
Target Start/End: Original strand, 26637647 - 26637792
Alignment:
Q  145 atttttcaattgtgtatattgataa-ttcactattagattataattttaatttcaacttatttatttgttttttatgcaggagttcaaatatatgaaagt 243  Q
    ||||| |||||||| ||||| |||| |||||||||||||| || |||| | ||  |||||||| ||  |||||||||||| ||||||| |||||||||||    
T  26637647 attttccaattgtgcatatttataaattcactattagattttagtttttagtt--acttatttcttatttttttatgcagaagttcaactatatgaaagt 26637744  T
Q  244 cttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    |||||||||  |||||| ||  | |||||| |||||||||||||||||    
T  26637745 cttgacattgaaccattgtcactatttaactcatatacccgatgtctc 26637792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 291
Target Start/End: Original strand, 26743613 - 26743758
Alignment:
Q  145 atttttcaattgtgtatattgataa-ttcactattagattataattttaatttcaacttatttatttgttttttatgcaggagttcaaatatatgaaagt 243  Q
    ||||| |||||||| ||||| |||| |||||||||||||| || |||| | ||  |||||||| ||  |||||||||||| ||||||| |||||||||||    
T  26743613 attttccaattgtgcatatttataaattcactattagattttagtttttagtt--acttatttcttatttttttatgcagaagttcaactatatgaaagt 26743710  T
Q  244 cttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    |||||||||  |||||| ||  | |||||| |||||||||||||||||    
T  26743711 cttgacattgaaccattgtcactatttaactcatatacccgatgtctc 26743758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 26825872 - 26825949
Alignment:
Q  109 atcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtgtatattgat-aattcactattagattat 185  Q
    |||| |||||| || |||||||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||    
T  26825872 atctagtattttgaacaaggcaagtgaaataagttcattttccaattgtgtatatttataaattcactactagattat 26825949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 26850704 - 26850789
Alignment:
Q  102 agtctctatcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtgtatattgat-aattcactattagattata 186  Q
    |||||||||| ||| |||||| |||||||||||||||||  | ||||| |||||||||||||| || |||| ||||| ||||||||    
T  26850704 agtctctatcatgtttttcgaacaaggcaagtgaaataacataattttccaattgtgtatatttataaatttactataagattata 26850789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 26863650 - 26863728
Alignment:
Q  109 atcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtgtatattgat-aattcactattagattata 186  Q
    ||||||| ||| || |||||||||||| |||| |||||||| |||||||||||||| || |||||||||| ||| ||||    
T  26863650 atcttgttttttgaacaaggcaagtgatataatttcattttccaattgtgtatatttataaattcactatgagagtata 26863728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 25076008 - 25076087
Alignment:
Q  212 ttttttatgcaggagttcaaatatatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    |||| ||||||||| ||||| |||||||||||||||| |||  |||||| |   | |||||| |||||||||||||||||    
T  25076008 ttttgtatgcaggaattcaactatatgaaagtcttgatattgaaccatttttactctttaactcatatacccgatgtctc 25076087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 27681163 - 27681220
Alignment:
Q  234 atatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    ||||||||||||||||||| ||| ||| |  || |||||| |||||||||||||||||    
T  27681163 atatgaaagtcttgacattggactattgtgaatatttaacacatatacccgatgtctc 27681220  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 27704198 - 27704141
Alignment:
Q  234 atatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    |||||| |||||||||||| ||||||| |  || |||||| |||||||||||||||||    
T  27704198 atatgacagtcttgacattggaccattgtaaatatttaacacatatacccgatgtctc 27704141  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 26886266 - 26886342
Alignment:
Q  215 tttatgcaggagttcaaatatatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    ||||||||| ||||| | |  ||||||||||||||||||||| ||| |  || |||||||||| ||||| |||||||    
T  26886266 tttatgcagaagttcgacttcatgaaagtcttgacatttgacaattgtgaatatttaacccatgtacccaatgtctc 26886342  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 26961070 - 26961194
Alignment:
Q  54 atcttccaagtagtttgagatattggaaatggttaagttgtcctttgaagtctctatcttgtatttcgagcaaggcaagtgaaataagttcatttttcaa 153  Q
    |||||||||||||||||  || ||| |||||| || | ||||||| |||| |||| || | | | ||||  ||||| |||||||||  |||||| | |||    
T  26961070 atcttccaagtagtttggtattttgcaaatggataggatgtccttcgaagactctttcatttttgtcgaataaggcgagtgaaatagtttcattctccaa 26961169  T
Q  154 ttgtgtatattgat-aattcactat 177  Q
    ||||||||||| || ||||||||||    
T  26961170 ttgtgtatatttataaattcactat 26961194  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 27696591 - 27696515
Alignment:
Q  215 tttatgcaggagttcaaatatatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    ||||||||| ||||| |  |||||||| |||||||||| ||| ||| |  || |||||| |||||||||||||||||    
T  27696591 tttatgcagaagttccagaatatgaaaatcttgacattggacgattgtgaatatttaacacatatacccgatgtctc 27696515  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 28125792 - 28125730
Alignment:
Q  124 caaggcaagtgaaataagttcatttttcaattgtgtatattgat-aattcactattagattat 185  Q
    ||||||||||||||||||||||||||  ||||||||||||| || ||||||||||||||||||    
T  28125792 caaggcaagtgaaataagttcattttcaaattgtgtatatttatgaattcactattagattat 28125730  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 28130830 - 28130767
Alignment:
Q  124 caaggcaagtgaaataagttcatttttcaattgtgtatattgat-aattcactattagattata 186  Q
    |||||||||||||||||||||||||| ||||||||||||||  | ||||||| |||||||||||    
T  28130830 caaggcaagtgaaataagttcattttccaattgtgtatatttttgaattcaccattagattata 28130767  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 18677577 - 18677520
Alignment:
Q  234 atatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    ||||||||||||||||||| ||| ||| || || |||||||||||||||| |||||||    
T  18677577 atatgaaagtcttgacattggactattgtctatatttaacccatatacccaatgtctc 18677520  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 18697420 - 18697363
Alignment:
Q  234 atatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    ||||||||||||||||||| ||| ||| || || |||||||||||||||| |||||||    
T  18697420 atatgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtctc 18697363  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 18653495 - 18653439
Alignment:
Q  234 atatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtct 290  Q
    ||||||||||||||||||| ||| ||| || || |||||||||||||||| ||||||    
T  18653495 atatgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtct 18653439  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 18687632 - 18687576
Alignment:
Q  234 atatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtct 290  Q
    ||||||||||||||||||| ||| ||| || || |||||||||||||||| ||||||    
T  18687632 atatgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtct 18687576  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 18697591 - 18697531
Alignment:
Q  109 atcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtgtatattgataa 169  Q
    |||||||||||  ||||||||||||||||||| ||||||||  |||||| |||||| ||||    
T  18697591 atcttgtatttgcagcaaggcaagtgaaataatttcattttctaattgtatatatttataa 18697531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 18722091 - 18722034
Alignment:
Q  234 atatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    ||||||||||||||||||| ||| | | || || |||||||||||||||| |||||||    
T  18722091 atatgaaagtcttgacattggacaagtgtcaatatttaacccatatacccaatgtctc 18722034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 18729513 - 18729456
Alignment:
Q  234 atatgaaagtcttgacatttgaccattctccatgtttaacccatatacccgatgtctc 291  Q
    ||||||||||||||||||| ||| | | || || |||||||||||||||| |||||||    
T  18729513 atatgaaagtcttgacattggacaagtgtcaatatttaacccatatacccaatgtctc 18729456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 17991395 - 17991277
Alignment:
Q  54 atcttccaagtagtttgaga-tattggaaatggttaagttgtcctttgaagtctctatc---ttgtatttcgagcaaggcaagtgaaataagttcatttt 149  Q
    ||||||||| |||||||||| ||||| ||||||  | | |||||||  |||||||||||   |||| ||||||  |||||||||||||||| ||||||||    
T  17991395 atcttccaaatagtttgagagtattg-aaatggaaaggatgtccttcaaagtctctatcatcttgtttttcgaataaggcaagtgaaataatttcatttt 17991297  T
Q  150 tcaattgtgtatattgataa 169  Q
      ||||||||||||| ||||    
T  17991296 ggaattgtgtatatttataa 17991277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 22023283 - 22023343
Alignment:
Q  109 atcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtgtatattgataa 169  Q
    |||| |||||| |||||||||||||||||||| |||| |||  |||||| |||||| ||||    
T  22023283 atctagtattttgagcaaggcaagtgaaataacttcactttctaattgtatatatttataa 22023343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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