View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0631_low_17 (Length: 329)
Name: NF0631_low_17
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0631_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 28451283 - 28451035
Alignment:
| Q |
11 |
tatgaatgaaaagagatgaagttgttattgttggacttgttataagtaaatgatgtaatgaattggggtagacgagagaatgaagaattgggggtaaaat |
110 |
Q |
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| T |
28451283 |
tatgaatgaaaagagatgaggttgttattgttggacttgttataagtaaatgatgtaatgaattggggtagacgagagaatgaagaattgggg-taaaag |
28451185 |
T |
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| Q |
111 |
agacgaggttgttaccgtaactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggttttgaattt |
210 |
Q |
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| T |
28451184 |
agatgaggttgttaccgtaactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggttttgaattt |
28451085 |
T |
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| Q |
211 |
ggggaaaattgaacattcaagttttaattgaattatagagtttgttgggg |
260 |
Q |
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| T |
28451084 |
gggaaaaattgaacattcaagttttaattgaattatagagtttgttgggg |
28451035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 14904339 - 14904091
Alignment:
| Q |
11 |
tatgaatgaaaagagatgaagttgttattgttggacttgttataagtaaatgatgtaatgaattggggtagacgagagaatgaagaattgggggtaaaat |
110 |
Q |
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| T |
14904339 |
tatgaatgaaaagagatgaggttgttattgttggacttgttataagtaaatgatgtaatgaattggggtagacgagagaatgaagaattgggg-taaaag |
14904241 |
T |
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| Q |
111 |
agacgaggttgttaccgtaactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggttttgaattt |
210 |
Q |
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| T |
14904240 |
agatgaggttgttaccgtaactgggaaaggtaatccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggttttgaattt |
14904141 |
T |
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| Q |
211 |
ggggaaaattgaacattcaagttttaattgaattatagagtttgttgggg |
260 |
Q |
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| T |
14904140 |
ggggaaaattgaacattcaagttttaattgaattatagagtttgttgggg |
14904091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 10536330 - 10536578
Alignment:
| Q |
11 |
tatgaatgaaaagagatgaagttgttattgttggacttgttataagtaaatgatgtaatgaattggggtagacgagagaatgaagaattgggggtaaaat |
110 |
Q |
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| T |
10536330 |
tatgaatgaaaagagatgaggttgttattgttggacttgttataagtaaatgatgtaatgaattggggtagacgagagaatgaagaattgggg-taaaag |
10536428 |
T |
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| Q |
111 |
agacgaggttgttaccgtaactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggttttgaattt |
210 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10536429 |
agatgaggttgttaccgtaactgggaaaggtaatccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaacatggttttgaattt |
10536528 |
T |
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| Q |
211 |
ggggaaaattgaacattcaagttttaattgaattatagagtttgttgggg |
260 |
Q |
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| T |
10536529 |
gggaaaaattgaacattcaagttttaattgaattatagagtttgttgggg |
10536578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 32538606 - 32538519
Alignment:
| Q |
172 |
gaagttgatttgaagtttgataaatatggttttgaatttggggaaaattgaacattcaagttttaattgaattatagagtttgttggg |
259 |
Q |
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|||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| | ||||| |||| |
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| T |
32538606 |
gaagttgattagaagcttgatgaatatggttttgtatttggggaaaattgaacattgaagttttaattgaattattgggtttgctggg |
32538519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 128 - 259
Target Start/End: Original strand, 18471452 - 18471568
Alignment:
| Q |
128 |
taactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggttttgaatttggggaaaattgaacatt |
227 |
Q |
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| T |
18471452 |
taactgggaaaggta---cacaggaagtatgaatgtgaattcatgaagttgatttgaagttt------------tttgaatttggggaaaattgaacatt |
18471536 |
T |
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| Q |
228 |
caagttttaattgaattatagagtttgttggg |
259 |
Q |
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| T |
18471537 |
gaagttttaattgaattattgggtttgttggg |
18471568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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