View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0631_low_2 (Length: 610)

Name: NF0631_low_2
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0631_low_2
NF0631_low_2
[»] chr3 (9 HSPs)
chr3 (1-595)||(41559761-41560353)
chr3 (270-395)||(49983522-49983646)
chr3 (165-335)||(30041242-30041429)
chr3 (166-211)||(49983876-49983921)
chr3 (212-316)||(40344926-40345034)
chr3 (264-349)||(24650132-24650217)
chr3 (266-411)||(32211843-32211988)
chr3 (266-317)||(25295106-25295157)
chr3 (214-261)||(43105143-43105190)
[»] chr2 (12 HSPs)
chr2 (165-411)||(32872290-32872553)
chr2 (266-368)||(31404938-31405039)
chr2 (214-336)||(14200363-14200491)
chr2 (257-336)||(34262733-34262811)
chr2 (267-392)||(38214080-38214206)
chr2 (288-355)||(7011100-7011167)
chr2 (165-211)||(34309378-34309424)
chr2 (169-211)||(45723857-45723899)
chr2 (266-410)||(39063648-39063793)
chr2 (269-315)||(17368928-17368974)
chr2 (165-208)||(31405122-31405165)
chr2 (267-413)||(38496420-38496566)
[»] chr1 (8 HSPs)
chr1 (169-395)||(27442312-27442554)
chr1 (156-373)||(28723891-28724124)
chr1 (169-410)||(32715643-32715900)
chr1 (214-410)||(17971358-17971560)
chr1 (169-204)||(17971091-17971126)
chr1 (165-208)||(45691537-45691580)
chr1 (266-316)||(36437254-36437304)
chr1 (266-386)||(42745518-42745637)
[»] chr6 (6 HSPs)
chr6 (156-335)||(6657903-6658098)
chr6 (278-410)||(19780181-19780313)
chr6 (165-349)||(9425503-9425705)
chr6 (267-355)||(180345-180433)
chr6 (169-211)||(19780397-19780439)
chr6 (269-317)||(34837207-34837255)
[»] chr8 (10 HSPs)
chr8 (214-395)||(36408181-36408368)
chr8 (156-373)||(38209446-38209680)
chr8 (266-355)||(36054821-36054910)
chr8 (156-211)||(5923988-5924043)
chr8 (266-355)||(31658858-31658947)
chr8 (266-334)||(5923844-5923912)
chr8 (214-391)||(8251205-8251388)
chr8 (212-258)||(2152429-2152475)
chr8 (345-406)||(4641024-4641086)
chr8 (269-315)||(11778083-11778129)
[»] chr7 (13 HSPs)
chr7 (212-385)||(41508075-41508254)
chr7 (215-355)||(10599747-10599893)
chr7 (156-211)||(14568523-14568578)
chr7 (266-355)||(14658828-14658917)
chr7 (278-367)||(14568350-14568439)
chr7 (270-315)||(35333328-35333373)
chr7 (278-355)||(42935459-42935536)
chr7 (286-357)||(2195808-2195879)
chr7 (214-261)||(10409798-10409845)
chr7 (172-211)||(10409861-10409900)
chr7 (220-261)||(13777745-13777786)
chr7 (278-355)||(17757477-17757554)
chr7 (212-261)||(25536490-25536539)
[»] chr4 (6 HSPs)
chr4 (266-408)||(54863874-54864018)
chr4 (169-336)||(25376784-25376968)
chr4 (212-312)||(31707346-31707449)
chr4 (263-355)||(21128101-21128193)
chr4 (169-204)||(54864029-54864064)
chr4 (266-343)||(18838769-18838845)
[»] scaffold0026 (1 HSPs)
scaffold0026 (266-317)||(68841-68892)
[»] chr5 (3 HSPs)
chr5 (269-391)||(18704968-18705090)
chr5 (266-317)||(11983635-11983686)
chr5 (285-355)||(17686237-17686308)
[»] scaffold1809 (1 HSPs)
scaffold1809 (266-355)||(551-640)


Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 41560353 - 41559761
Alignment:
Q  1 tgatgaaatgaaaggagctgaagccatggatgtctatttgagagattg--------gtattgaattaatagtattgatgtaattatgaacagacagaatt 92  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||        |||||||||||||||||||||||||||||| |||||||||||||    
T  41560353 tgatgaaatgaaaggagctgaagccatggatgtatatttgagtgattgagtggttggtattgaattaatagtattgatgtaattataaacagacagaatt 41560254  T
Q  93 attgaagtgtgatcttgaagagaaataagaagtgatgagaataataaatatgtactctctcctctccggtaatttttataagaaaagaaaccaaaaatca 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  41560253 attgaagtgtgatcttgaagagaaataagaagtgatgagaataataaatatgtactccctcctctctg-taatttttataagaaaagaaaccaaaaatca 41560155  T
Q  193 tcaaaaccaagacaatcatactttttgaatgtttttataattatacctttataaaaatttgtgaagtataactcactaatattagaaagacaaacattaa 292  Q
    | |||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41560154 tgaaaaccaagataatcatactttttgaatgtttttataaatataccttcataaaaatttgtgaagtataactcactaatattagaaagacaaacattaa 41560055  T
Q  293 atgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattgaaagttttcctataa 392  Q
    |||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  41560054 atgagagttaaaaaagtcttttaaatcataaatgtatcttaaaaattatgattttttcttatatattggaccaaattttttattgaaaatttttctataa 41559955  T
Q  393 ataacaccggagggagtatatgatatttagaatgaaattattgagaaaaattgaagtcctagagacgcaccaatccacgtggccgtgtatggcacaaggc 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  41559954 ataacaccggagggagtatatgatatttagaatgaaattattgagaaaaattgaagtcct--agacgcaccaatccacgtggccgtgtatggcacaaggc 41559857  T
Q  493 aattaaggcatgtgtcattttgtgtagcaatgataccatatacgtatatatatatannnnnnnnnnagtatatgtcatgtatcataatgtctaatatatc 592  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||           ||||||||||||||||||||||||||||||||||    
T  41559856 aattaaggcatgtgtcattttctgtagcaatgataccat-tacgtatatatatat------tttttagtatatgtcatgtatcataatgtctaatatatc 41559764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 270 - 395
Target Start/End: Complemental strand, 49983646 - 49983522
Alignment:
Q  270 aatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaatt 369  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||||  ||||||||| ||||||| || ||| ||||||||||||| | || | ||||    
T  49983646 aatattaaaaagacaaacattaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaagttgtgactttttcttatatatttgatc-aatt 49983548  T
Q  370 ttttattgaaagttttcctataaata 395  Q
    |||| |||||| ||||||||||||||    
T  49983547 tttttttgaaaattttcctataaata 49983522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 165 - 335
Target Start/End: Original strand, 30041242 - 30041429
Alignment:
Q  165 tttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttataaaaatttg 253  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||           | ||||||||||||||||||| |||||| | ||||| |||||    
T  30041242 tttttataagaaaaaaaataaaaaatcatcaaaaccaagacaatcattagtggttgtaattttttgaatgtttttataaatataccctcataaagatttg 30041341  T
Q  254 tgaagtat-aact-----cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaa 335  Q
    |||||||| || |     ||||||||||| ||||||||||||||| | ||| ||| ||||||||||||||  |||||| |||||||||    
T  30041342 tgaagtattaaatataaccactaatattaaaaagacaaacattaattaagggttagaaaagtcttttaaacaataaatataccttaaa 30041429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 49983921 - 49983876
Alignment:
Q  166 ttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 211  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||    
T  49983921 ttttataagaaaagaaatcaaaaatcattaaaaccaagacaatcat 49983876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 40344926 - 40345034
Alignment:
Q  212 actttttgaatgtttttataattatacctttataaaaatttgtgaagtataa----ctcactaatattagaaagacaaacattaaatgaggattaaaaaa 307  Q
    ||||||||||| |||||| || |||||| ||||||||| |||||||  || |    ||||||||||||| ||||||||| |||||||||||  || ||||    
T  40344926 actttttgaatatttttacaaatatacccttataaaaaattgtgaaccattaaatactcactaatattaaaaagacaaatattaaatgaggggtataaaa 40345025  T
Q  308 gtcttttaa 316  Q
    |||| ||||    
T  40345026 gtctcttaa 40345034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 24650217 - 24650132
Alignment:
Q  264 ctcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgatttttt 349  Q
    ||||||||||||| ||||||||| |||||| || | |||||||||| |||| ||  |||||| |||||||||| || | |||||||    
T  24650217 ctcactaatattaaaaagacaaaaattaaaagaaggttaaaaaagtttttttaacaataaatataccttaaaagttgtaatttttt 24650132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 411
Target Start/End: Original strand, 32211843 - 32211988
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacca 365  Q
    ||||||||||| ||||||||||||||||| | |  || ||||||||||||||  |||| |  ||||||||| || |||  |||||||||| |   |||||    
T  32211843 cactaatattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttataaataagacca 32211942  T
Q  366 aattttttattgaaagttttcctataaataacaccggagggagtat 411  Q
    |   |||| |||||| ||||| |||| |||  ||||||||||||||    
T  32211943 acaatttttttgaaaattttcttatatataggaccggagggagtat 32211988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 25295106 - 25295157
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaa 317  Q
    ||||||||||| ||||| || ||||||||||||  |||||||||||||||||    
T  25295106 cactaatattaaaaagagaagcattaaatgagggataaaaaagtcttttaaa 25295157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 43105143 - 43105190
Alignment:
Q  214 tttttgaatgtttttataattatacctttataaaaatttgtgaagtat 261  Q
    |||||||||||||||| || |||||| | |||||||||||||||||||    
T  43105143 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtat 43105190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 165 - 411
Target Start/End: Complemental strand, 32872553 - 32872290
Alignment:
Q  165 tttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttataaaaatttg 253  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||           | |||||||||||||||| || |||||| | ||||||| |||    
T  32872553 tttttataagaaaagaaaccaaagatcatcaaaaccaagacaatcattagtggttgtaattttttgaatgtttttacaaatataccctcataaaaaattg 32872454  T
Q  254 tgaagtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgatttt 347  Q
    |||||||| |      | ||||||||||| || |||||||||||||| ||| ||  ||||||||||||||  ||||||||| ||||||| | |  | |||    
T  32872453 tgaagtattaaatatacccactaatattaaaaggacaaacattaaattagggttggaaaagtcttttaaacaataaatgtaacttaaaagtcacaacttt 32872354  T
Q  348 ttcttatatactggaccaaattttttattgaaagttttcctataaataacaccggagggagtat 411  Q
    |||||||||| | ||||||| ||||| ||||||  |||| ||||||||  |||||| |||||||    
T  32872353 ttcttatatatttgaccaaagttttttttgaaaaatttcttataaataggaccggaaggagtat 32872290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 31405039 - 31404938
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacca 365  Q
    ||||||||||| ||||||||| ||||||||||| ||| ||||||||||||||  |||||||||||||||||| ||||| ||||||||||||  |||||||    
T  31405039 cactaatattaaaaagacaaatattaaatgagggttagaaaagtcttttaaaaaataaatgtaccttaaaaa-tatgactttttcttatattttggacca 31404941  T
Q  366 aat 368  Q
    |||    
T  31404940 aat 31404938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 214 - 336
Target Start/End: Original strand, 14200363 - 14200491
Alignment:
Q  214 tttttgaatgtttttataattatacctttataaaaatttgtgaagtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaaaa 307  Q
    |||||||||||||||| || |||||| | ||||||||||||||||||| |      ||||||||||||  |||||  |||||||||||||| ||||||||    
T  14200363 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatatactcactaatattgaaaagatcaacattaaatgagggttaaaaaa 14200462  T
Q  308 gtcttttaaatcataaatgtaccttaaaa 336  Q
    ||||||||||| ||||||||| |||||||    
T  14200463 gtcttttaaataataaatgtatcttaaaa 14200491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 34262811 - 34262733
Alignment:
Q  257 agtataactcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaa 336  Q
    |||||||| ||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||  ||||||| |||||||||    
T  34262811 agtataac-cactaatattaaaaagacaaacattaattgagggttagaaaagtcttttaaacaataaatgaaccttaaaa 34262733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 38214206 - 38214080
Alignment:
Q  267 actaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacc-a 365  Q
    |||||||||| ||||| ||  |||||||||||  || ||||||||||||||  ||||||  ||||||||| || ||| ||||||||||| | |||||| |    
T  38214206 actaatattaaaaagagaagtattaaatgagggatataaaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggaccaa 38214107  T
Q  366 aattttttattgaaagttttcctataa 392  Q
    |||||||| |||||| ||||| |||||    
T  38214106 aatttttttttgaaatttttcttataa 38214080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 7011167 - 7011100
Alignment:
Q  288 attaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata 355  Q
    ||||||||||| ||| ||||||||||||||  ||||||||| |||||||||| ||| |||||||||||    
T  7011167 attaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaaattgtgactttttcttata 7011100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 34309424 - 34309378
Alignment:
Q  165 tttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 211  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  34309424 tttttataagaaaataaaccaaaaatcatcaaaatcaagacaatcat 34309378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 45723857 - 45723899
Alignment:
Q  169 tataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  45723857 tataagaaaagaaaccaaaaatcatcaaaaccaaaacaatcat 45723899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 410
Target Start/End: Original strand, 39063648 - 39063793
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacca 365  Q
    ||||||||||| ||||| ||  |||||||||| | || ||||||||||||||  ||||||  ||||||||| || ||| ||||||||||| | |||||||    
T  39063648 cactaatattaaaaagagaagtattaaatgagcaatataaaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggacca 39063747  T
Q  366 aattt-tttattgaaagttttcctataaataacaccggagggagta 410  Q
    | ||| ||| || ||| ||||| |||||  |  |||||||||||||    
T  39063748 attttatttttttaaaattttcttataataaggaccggagggagta 39063793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 17368928 - 17368974
Alignment:
Q  269 taatattagaaagacaaacattaaatgaggattaaaaaagtctttta 315  Q
    |||||||| ||||||||||||||||| |||| |||||||||||||||    
T  17368928 taatattaaaaagacaaacattaaataaggactaaaaaagtctttta 17368974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 31405165 - 31405122
Alignment:
Q  165 tttttataagaaaagaaaccaaaaatcatcaaaaccaagacaat 208  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||    
T  31405165 tttttataagaaaagaaattaaaaatcttcaaaaccaagacaat 31405122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 413
Target Start/End: Complemental strand, 38496566 - 38496420
Alignment:
Q  267 actaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaa 366  Q
    |||||||||| ||| |||||| |||||| |||  || ||| ||||||||||  |||| | ||||||||||||| |||  |||||||||| |  |||| ||    
T  38496566 actaatattaaaaatacaaacgttaaataaggggtagaaaggtcttttaaacaataactataccttaaaaattctgacattttcttataaataggactaa 38496467  T
Q  367 attttttattgaaagttttcctataaataacaccggagggagtatat 413  Q
      | ||| |||||| ||||| |||| |||  | ||||||||||||||    
T  38496466 catattttttgaaaattttcttatatataggatcggagggagtatat 38496420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 169 - 395
Target Start/End: Original strand, 27442312 - 27442554
Alignment:
Q  169 tataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttataaaaatttgtgaa 257  Q
    |||||||||||||||||||||| ||||||||||||||||||||           | |||||||||||||||| || |||| | | |||||||||||||||    
T  27442312 tataagaaaagaaaccaaaaattatcaaaaccaagacaatcattagttgttgcaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaa 27442411  T
Q  258 gtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttct 351  Q
    |||| |      | || ||||||| ||||||| |||||||||||||| ||| ||||||||||||||   ||||| ||| |||||| || |||||||||||    
T  27442412 gtattaaatatacccattaatatt-gaaagaccaacattaaatgagggttagaaaagtcttttaaacactaaatatactttaaaagttgtgattttttct 27442510  T
Q  352 tatatactggaccaaattttttattgaaagttttcctataaata 395  Q
    |||| |  ||||||| |||||| |||||| ||||| ||||||||    
T  27442511 tataaataggaccaagtttttttttgaaaattttcttataaata 27442554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 156 - 373
Target Start/End: Original strand, 28723891 - 28724124
Alignment:
Q  156 ctccggtaatttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttat 244  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||           | |||||||||| ||||| |  |||||| | ||    
T  28723891 ctccggtcatttttataagaaaagaaatcaaaaatcatcataaccaagacaatcattagcggttgtaattttttgaatgcttttacagatataccctcat 28723990  T
Q  245 aaaaatttgtgaagtat-aact-----cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaat 338  Q
    ||||||||||||||||| || |     ||||||||||| ||||| ||||||||| ||||| ||| ||||||||||||||| ||||||| || || ||| |    
T  28723991 aaaaatttgtgaagtattaaatataaccactaatattaaaaagataaacattaattgagggttagaaaagtcttttaaataataaatgcacatt-aaagt 28724089  T
Q  339 tatgattttttcttatatactggaccaaatttttt 373  Q
    | ||| ||||||||||||| |||||||| ||||||    
T  28724090 tgtgactttttcttatatattggaccaattttttt 28724124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 169 - 410
Target Start/End: Complemental strand, 32715900 - 32715643
Alignment:
Q  169 tataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttataaaaatttgtgaa 257  Q
    |||||||||||||||||||||||||||||||||||||||||||           | |||||||||||||||| || |||| | | |||||||||||||||    
T  32715900 tataagaaaagaaaccaaaaatcatcaaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaa 32715801  T
Q  258 gtat------aactcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttct 351  Q
    ||||       || ||||||||||  |||||  ||||||||||||||  || ||||| ||||||||  ||||||| ||||||||| || ||| |||||||    
T  32715800 gtattaaatatacccactaatattgaaaagatcaacattaaatgagggctagaaaagacttttaaacaataaatg-accttaaaatttgtgactttttct 32715702  T
Q  352 tatatactggaccaaattttttattgaaagttttcctataaataacaccggagggagta 410  Q
    |||| |  |||||||||||||| |  ||| ||||  |||| |||  |||||||||||||    
T  32715701 tataaataggaccaaattttttttaaaaaattttgttatatataggaccggagggagta 32715643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 214 - 410
Target Start/End: Original strand, 17971358 - 17971560
Alignment:
Q  214 tttttgaatgtttttataattatacctttataaaaatttgtgaagtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaaaa 307  Q
    |||||||||||||||| || |||||| |  |||||||||||||||||| |      | ||||||||||  |||||| |||||||||||||| ||| ||||    
T  17971358 tttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatacacactaatattgaaaagaccaacattaaatgagggttagaaaa 17971457  T
Q  308 gtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattgaaagttttcctataaataacaccggaggga 407  Q
    ||||||||||  |||||| |||||||||| || ||| ||||||||||| |  ||||||||   ||| |||||| ||||| |||| |||  ||| ||||||    
T  17971458 gtcttttaaacaataaatataccttaaaagttgtgactttttcttataaataggaccaaaacgttttttgaaaattttcttatatataggaccagaggga 17971557  T
Q  408 gta 410  Q
    |||    
T  17971558 gta 17971560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 17971091 - 17971126
Alignment:
Q  169 tataagaaaagaaaccaaaaatcatcaaaaccaaga 204  Q
    ||||||||||||||||||||||||||||||||||||    
T  17971091 tataagaaaagaaaccaaaaatcatcaaaaccaaga 17971126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 45691537 - 45691580
Alignment:
Q  165 tttttataagaaaagaaaccaaaaatcatcaaaaccaagacaat 208  Q
    |||||||||||| ||||| |||||||||||||||||||||||||    
T  45691537 tttttataagaagagaaatcaaaaatcatcaaaaccaagacaat 45691580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 36437254 - 36437304
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaa 316  Q
    ||||||||||| ||||||| |||||||||||||  ||||||||||||||||    
T  36437254 cactaatattaaaaagacagacattaaatgagggataaaaaagtcttttaa 36437304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 386
Target Start/End: Complemental strand, 42745637 - 42745518
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacca 365  Q
    ||||||||||| |||| ||| | ||||||||||  |||||| || |||||||  |||| | ||| | ||||||| |||  |||||||||| |  ||||||    
T  42745637 cactaatattaaaaaggcaatccttaaatgagggataaaaa-gtattttaaacaataattatacttcaaaaattgtgacattttcttataaataggacca 42745539  T
Q  366 aattttttattgaaagttttc 386  Q
    |||||||| |||||| |||||    
T  42745538 aatttttttttgaaatttttc 42745518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 156 - 335
Target Start/End: Complemental strand, 6658098 - 6657903
Alignment:
Q  156 ctccggtaatttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat----------actttttgaatgtttttataattatacctttata 245  Q
    |||||||  ||||||||||||||||||||||||||||||||||||  |||||||||          | ||||| ||||| |||| || |||||| | |||    
T  6658098 ctccggtcctttttataagaaaagaaaccaaaaatcatcaaaaccttgacaatcattagtggttgtaattttttaatgtatttacaaatataccctcata 6657999  T
Q  246 aaaatttgtgaagtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaa 335  Q
    |||||||||||||||| |      | ||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||  ||||||||||||||||    
T  6657998 aaaatttgtgaagtattaaatatacccactaatattaaaaagacaaacattaaatgagggttagaaaagtcatttaaacaataaatgtaccttaaa 6657903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 278 - 410
Target Start/End: Complemental strand, 19780313 - 19780181
Alignment:
Q  278 aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattg 377  Q
    ||||| ||||||||||||||| ||| ||||||||||||||  |||||| || ||||||| ||   | |||||||||||||  |||||||||||||| |||    
T  19780313 aaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatataggaccaaatttttttttg 19780214  T
Q  378 aaagttttcctataaataacaccggagggagta 410  Q
    ||| ||||| |||| |||  | |||||||||||    
T  19780213 aaaattttcttatatatagaatcggagggagta 19780181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 165 - 349
Target Start/End: Complemental strand, 9425705 - 9425503
Alignment:
Q  165 tttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcatac------------tttttgaatgtttttataattatacctttataaaaattt 252  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||              |||||||||||||||| || |||||  | |||||| | |    
T  9425705 tttttataagaagagaaaccaaaaatcatcaaaaccaagaaaatcattagttgttgcaatttttttgaatgtttttacaaatatactctcataaaattct 9425606  T
Q  253 gtgaagtataac------tcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattt 346  Q
    ||||||||| |       |||||| ||| | ||||| ||||||||||||||||||||||||||||||||||  |||||| ||||| |||| || ||||||    
T  9425605 gtgaagtattaaatatattcactattatgaaaaagataaacattaaatgaggattaaaaaagtcttttaaacaataaatatacctcaaaagttgtgattt 9425506  T
Q  347 ttt 349  Q
    |||    
T  9425505 ttt 9425503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 355
Target Start/End: Complemental strand, 180433 - 180345
Alignment:
Q  267 actaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata 355  Q
    |||||||||| ||||||||||||||||| |||  || |||||||||||||   |||| |  | |||||||||| |||| ||||||||||    
T  180433 actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaagcaataactacatcttaaaaattgtgatattttcttata 180345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 19780439 - 19780397
Alignment:
Q  169 tataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 211  Q
    |||||||||||||| || |||||||||||||||||| ||||||    
T  19780439 tataagaaaagaaatcataaatcatcaaaaccaagataatcat 19780397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 34837207 - 34837255
Alignment:
Q  269 taatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaa 317  Q
    |||||||| |||||||| |||||||| |||  |||||||||||||||||    
T  34837207 taatattaaaaagacaagcattaaataaggggtaaaaaagtcttttaaa 34837255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 214 - 395
Target Start/End: Original strand, 36408181 - 36408368
Alignment:
Q  214 tttttgaatgtttttataattatacctttataaaaatttgtgaagtataact------cactaatattagaaagacaaacattaaatgaggattaaaaaa 307  Q
    |||||||||||||||| || |||||| | |||||||||||| |||||| | |      ||||||||||| |||||||||||||||| |||| ||||||||    
T  36408181 tttttgaatgtttttacaaatataccctcataaaaatttgttaagtattaattatatccactaatattaaaaagacaaacattaaacgagggttaaaaaa 36408280  T
Q  308 gtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaa-ttttttattgaaagttttcctataaata 395  Q
    || | |||||  ||||||||||||| ||| || ||| |||||||||||||   ||||||| |||||| |||||| ||||| ||||||||    
T  36408281 gtttgttaaacaataaatgtacctt-aaagttgtgactttttcttatatataagaccaaagtttttttttgaaaattttcttataaata 36408368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 156 - 373
Target Start/End: Original strand, 38209446 - 38209680
Alignment:
Q  156 ctccggtaatttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttat 244  Q
    |||||||  ||| |||||||||| ||| ||||||||||||||||||||| ||||||           | ||||| ||| ||||||||| |||||| || |    
T  38209446 ctccggtcctttatataagaaaaaaaatcaaaaatcatcaaaaccaagataatcattacttgttgaaattttttaaatatttttataaatataccctttt 38209545  T
Q  245 aaaaatttgtgaagtata------actcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaat 338  Q
    |||||||||||||||||       || ||||||||||  |||||| |||||||||||||| ||| | ||||||||||||  ||||||||||||||||| |    
T  38209546 aaaaatttgtgaagtatttaatatacccactaatattgaaaagaccaacattaaatgagggttagagaagtcttttaaacaataaatgtaccttaaaagt 38209645  T
Q  339 tatgattttttcttatatactggaccaaatttttt 373  Q
    | ||| ||||||||||| |   |||||||||||||    
T  38209646 tgtgactttttcttataaatatgaccaaatttttt 38209680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 355
Target Start/End: Complemental strand, 36054910 - 36054821
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata 355  Q
    ||||||||||| ||||||||||||||| | |||  || ||||||||||||||  |||||| |||||||||| || |||  ||||||||||    
T  36054910 cactaatattaaaaagacaaacattaattaaggggtataaaagtcttttaaacaataaatataccttaaaagttgtgacattttcttata 36054821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 5924043 - 5923988
Alignment:
Q  156 ctccggtaatttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 211  Q
    |||||||  |||||||||||||| ||| ||||||||||||||||||||| ||||||    
T  5924043 ctccggtcttttttataagaaaataaatcaaaaatcatcaaaaccaagataatcat 5923988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 355
Target Start/End: Complemental strand, 31658947 - 31658858
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata 355  Q
    ||||| ||||| ||||||||||||||||| | | ||||||||||||||||||  |||| |  | ||||||| || |||| ||||||||||    
T  31658947 cactagtattaaaaagacaaacattaaataaaggttaaaaaagtcttttaaacaataactacatcttaaaagttgtgatattttcttata 31658858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 5923912 - 5923844
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaa 334  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||    ||||||  |||||||||||||||    
T  5923912 cactaatattaaaaagacaaacattaaatgagggttagaaaaaaaatttaaacaataaatgtaccttaa 5923844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 391
Target Start/End: Complemental strand, 8251388 - 8251205
Alignment:
Q  214 tttttgaatgtttttataattatacctttataaaaatttgtgaagtat------aactcactaatattagaaagacaaacattaaatgaggattaaaaaa 307  Q
    ||||||||| |||||| || |||||| | ||||||| |||||||| ||      ||||||||||||||| |||||||| |||||||| | |   |||||     
T  8251388 tttttgaatatttttacaaatataccctcataaaaaattgtgaagcattaaataaactcactaatattaaaaagacaaccattaaataatggggaaaaag 8251289  T
Q  308 gtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattgaaagttttcctata 391  Q
    |||||||||   |||| |  ||||||||| || |||| |||||||||| |  ||||||||| |||| || ||| ||||| ||||    
T  8251288 gtcttttaagcaataattacaccttaaaagttgtgatattttcttataaataggaccaaatattttttttaaaattttcttata 8251205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 2152475 - 2152429
Alignment:
Q  212 actttttgaatgtttttataattatacctttataaaaatttgtgaag 258  Q
    ||||||||||| ||||||||| |||||| ||||||||| ||||||||    
T  2152475 actttttgaatatttttataaatatacccttataaaaaattgtgaag 2152429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 4641086 - 4641024
Alignment:
Q  345 tttttcttatatactggaccaaatt-ttttattgaaagttttcctataaataacaccggaggg 406  Q
    ||||||||||||| ||||||||||| |||| |||||| ||||| ||||||||  |||||||||    
T  4641086 tttttcttatatattggaccaaattttttttttgaaaattttcttataaataggaccggaggg 4641024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 11778129 - 11778083
Alignment:
Q  269 taatattagaaagacaaacattaaatgaggattaaaaaagtctttta 315  Q
    |||||||| ||||||||||||||||| ||| |||| |||||||||||    
T  11778129 taatattaaaaagacaaacattaaataagggttaagaaagtctttta 11778083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 212 - 385
Target Start/End: Complemental strand, 41508254 - 41508075
Alignment:
Q  212 actttttgaatgtttttataattatacctttataaaaatttgtgaagtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaa 305  Q
    |||||||||||||||||| || |||||| | ||||||| |||||||| || |      | ||||||||||| ||||||||||||||||| |||  |||||    
T  41508254 actttttgaatgtttttacaaatataccctcataaaaaattgtgaagcattaaatacacccactaatattaaaaagacaaacattaaataaggggtaaaa 41508155  T
Q  306 aagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattgaaagtttt 385  Q
    |||||||||||   |||| |  |||||||||||| |||| |||||||||||   |||||||||||||| |||||| ||||    
T  41508154 aagtcttttaagcaataactacaccttaaaaattgtgatattttcttatatttaggaccaaatttttttttgaaaatttt 41508075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 215 - 355
Target Start/End: Original strand, 10599747 - 10599893
Alignment:
Q  215 ttttgaatgtttttataattatacctttataaaaatttgtgaagtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaaaag 308  Q
    ||||||||| ||||| || |||||| | |||||| |||||||||||| |      | ||||| ||||| ||||| ||||||||||||| | ||| |||||    
T  10599747 ttttgaatgattttacaaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgaaggttagaaaag 10599846  T
Q  309 tcttttaaatcataaatgtaccttaaaaattatgattttttcttata 355  Q
    | ||| |||  |||||||||||| |||| || ||| |||||||||||    
T  10599847 tttttcaaacaataaatgtacctcaaaagttgtgactttttcttata 10599893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 14568578 - 14568523
Alignment:
Q  156 ctccggtaatttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 211  Q
    |||||||  ||| |||||||||||||| || |||||||||||||||||||||||||    
T  14568578 ctccggtcctttatataagaaaagaaatcataaatcatcaaaaccaagacaatcat 14568523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 355
Target Start/End: Original strand, 14658828 - 14658917
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatga-ttttttcttata 355  Q
    ||||| ||||| ||||| |||||||||| ||||||| ||||||||||||| ||  |||||  ||||| |||||||||| ||||||||||||    
T  14658828 cactagtattaaaaagataaacattaaacgaggattgaaaaagtcttttacatagtaaatacacctt-aaaattatgacttttttcttata 14658917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 278 - 367
Target Start/End: Complemental strand, 14568439 - 14568350
Alignment:
Q  278 aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaa 367  Q
    ||||| ||||||||||||||| ||| ||||||||||||||  |||||| || ||||||| ||   | |||||||||||||  ||||||||    
T  14568439 aaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatataggaccaaa 14568350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 35333373 - 35333328
Alignment:
Q  270 aatattagaaagacaaacattaaatgaggattaaaaaagtctttta 315  Q
    ||||||| ||||||||||||||||||||| |||||||| |||||||    
T  35333373 aatattaaaaagacaaacattaaatgagggttaaaaaaatctttta 35333328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 278 - 355
Target Start/End: Complemental strand, 42935536 - 42935459
Alignment:
Q  278 aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata 355  Q
    |||||| ||||||||||||| |||| |||| |||||||||  ||||||||| || |||| || ||| |||||||||||    
T  42935536 aaagaccaacattaaatgagaattagaaaaatcttttaaacaataaatgtatctcaaaagttgtgactttttcttata 42935459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 2195879 - 2195808
Alignment:
Q  286 acattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatata 357  Q
    ||||||||||| || || ||||||||||||||  |||| |  ||||||||| ||||||| ||||||||||||    
T  2195879 acattaaatgaagagtagaaaagtcttttaaacaataactacaccttaaaagttatgatattttcttatata 2195808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 10409845 - 10409798
Alignment:
Q  214 tttttgaatgtttttataattatacctttataaaaatttgtgaagtat 261  Q
    ||||||||||||||||||| |||||| |  ||||||||||||||||||    
T  10409845 tttttgaatgtttttataaatataccctcttaaaaatttgtgaagtat 10409798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 10409900 - 10409861
Alignment:
Q  172 aagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 211  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  10409900 aagaaaagaaacaaaaaatcatcaaaaccaaaacaatcat 10409861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 13777786 - 13777745
Alignment:
Q  220 aatgtttttataattatacctttataaaaatttgtgaagtat 261  Q
    ||||||||||||| ||||| || |||||||||||||||||||    
T  13777786 aatgtttttataaatatacgttcataaaaatttgtgaagtat 13777745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 355
Target Start/End: Original strand, 17757477 - 17757554
Alignment:
Q  278 aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata 355  Q
    |||||| | |||||||| ||| ||||||| |||||||||   ||||||||||||||||| || ||  |||||||||||    
T  17757477 aaagaccaccattaaattagggttaaaaatgtcttttaagcaataaatgtaccttaaaagttgtgtctttttcttata 17757554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 25536490 - 25536539
Alignment:
Q  212 actttttgaatgtttttataattatacctttataaaaatttgtgaagtat 261  Q
    ||||||| ||||||| ||||| || |||||||||||||||| ||||||||    
T  25536490 actttttaaatgtttgtataaatacacctttataaaaatttatgaagtat 25536539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 266 - 408
Target Start/End: Complemental strand, 54864018 - 54863874
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacca 365  Q
    ||||||||||  |||||  |||||||||||||  ||| ||||| ||||||||  ||||||||||||||||| || ||| ||||||||||| |  ||||||    
T  54864018 cactaatattgaaaagatcaacattaaatgagagttagaaaagccttttaaacaataaatgtaccttaaaagttgtgactttttcttataaataggacca 54863919  T
Q  366 a--attttttattgaaagttttcctataaataacaccggagggag 408  Q
    |   |||||| |||||| ||||| ||||||||  |||||||||||    
T  54863918 attttttttttttgaaaattttcttataaatagaaccggagggag 54863874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 336
Target Start/End: Original strand, 25376784 - 25376968
Alignment:
Q  169 tataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttataaaaatttgtgaa 257  Q
    ||||||||||||| | |||||||||||||||||||||||||||           | |||||||||||||||| || |||||| |  ||||||||||||||    
T  25376784 tataagaaaagaagcaaaaaatcatcaaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatataccctcttaaaaatttgtgaa 25376883  T
Q  258 gtat------aactcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaa 336  Q
    ||||       |||||| ||||||  |||||  |||||||||||||| ||| ||||||||||||||  |||| | ||||||||||    
T  25376884 gtattaaatatactcacaaatattgaaaagatcaacattaaatgagggttagaaaagtcttttaaacaataattataccttaaaa 25376968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 31707346 - 31707449
Alignment:
Q  212 actttttgaatgtttttataattatacctttataaaaatttgtgaagtata---actcactaatattagaaagacaaacattaaatgaggattaaaaaag 308  Q
    ||||||||||| |||||| || |||||| | |||||||||| ||||| |||   || ||||||||||| ||||||||||||||||| |||  || |||||    
T  31707346 actttttgaatatttttacaaatataccctcataaaaatttatgaagcatatacacccactaatattaaaaagacaaacattaaataaggggtagaaaag 31707445  T
Q  309 tctt 312  Q
    ||||    
T  31707446 tctt 31707449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 355
Target Start/End: Complemental strand, 21128193 - 21128101
Alignment:
Q  263 actcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata 355  Q
    |||||||||||| | ||||| |||||| |||||||| ||  ||||||||||||||  |||||| ||| |||||| ||||||  ||||||||||    
T  21128193 actcactaatataaaaaagataaacataaaatgagggttggaaaagtcttttaaaaaataaatatacattaaaagttatgacattttcttata 21128101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 54864064 - 54864029
Alignment:
Q  169 tataagaaaagaaaccaaaaatcatcaaaaccaaga 204  Q
    |||||||||||||| |||||||||||||||||||||    
T  54864064 tataagaaaagaaatcaaaaatcatcaaaaccaaga 54864029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 18838845 - 18838769
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatga 343  Q
    ||||||||||| ||||| || ||||||||||||  || ||||||||||||||  |||| | |||||||||| ||||||    
T  18838845 cactaatattaaaaagataatcattaaatgagg-gtagaaaagtcttttaaacaataattataccttaaaagttatga 18838769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 68892 - 68841
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaa 317  Q
    ||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  68892 cactaatattaaaacgacaaacattaaatgaggaataaaaaagtcttttaaa 68841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 391
Target Start/End: Complemental strand, 18705090 - 18704968
Alignment:
Q  269 taatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaat 368  Q
    |||||||| ||| | ||||||||||| | |  |||||||||||||||| | |||| |  ||||||||| ||||||| ||||||||||   |||||||||     
T  18705090 taatattaaaaacaaaaacattaaataaagggtaaaaaagtcttttaagtaataactacaccttaaaagttatgatgttttcttataatttggaccaaag 18704991  T
Q  369 tttttattgaaagttttcctata 391  Q
     |||| |||||| ||||| ||||    
T  18704990 atttttttgaaaattttcttata 18704968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 11983635 - 11983686
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaa 317  Q
    ||||||||||| ||||| |||||||||||||||  ||||||| |||||||||    
T  11983635 cactaatattaaaaagagaaacattaaatgaggggtaaaaaaatcttttaaa 11983686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 17686308 - 17686237
Alignment:
Q  285 aacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatga-ttttttcttata 355  Q
    ||||||||| ||||||| ||||||||||||| ||  |||||  ||||||||| |||||| ||||||||||||    
T  17686308 aacattaaaggaggattgaaaaagtcttttatatagtaaatacaccttaaaagttatgacttttttcttata 17686237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 355
Target Start/End: Original strand, 551 - 640
Alignment:
Q  266 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata 355  Q
    ||||||||||| || ||||| ||||||||||||  |||||||||||||||||  |||| |  ||||||||  || ||| |||||||||||    
T  551 cactaatattaaaacgacaatcattaaatgagggataaaaaagtcttttaaacaataactacaccttaaatgttgtgactttttcttata 640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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