View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0631_low_22 (Length: 314)
Name: NF0631_low_22
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0631_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 33 - 303
Target Start/End: Complemental strand, 1066015 - 1065745
Alignment:
| Q |
33 |
cccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaaca |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1066015 |
cccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaaca |
1065916 |
T |
|
| Q |
133 |
gttttcattcttggttccaccatatgacagtaaagaatgccatatttattgagggcattgaccatatagagtcccaattcattggggttggagtctccac |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1065915 |
gttttcattcttggttccaccatatgacagtaaagaataccatatttattgagggcattgaccatataaagtcccaattcattggggttggagtctccac |
1065816 |
T |
|
| Q |
233 |
attctgcatactccgcaaaaggtgataatcttatcccaactctttcttctcctatctcatttgcaacagct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
1065815 |
attctgcatactccgcaaaaggtgataatcttattccaactctttctgctcctatctcatttgcaacagct |
1065745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 33 - 303
Target Start/End: Complemental strand, 1071742 - 1071472
Alignment:
| Q |
33 |
cccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaaca |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1071742 |
cccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaaca |
1071643 |
T |
|
| Q |
133 |
gttttcattcttggttccaccatatgacagtaaagaatgccatatttattgagggcattgaccatatagagtcccaattcattggggttggagtctccac |
232 |
Q |
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||| ||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||| |
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| T |
1071642 |
gttatcattcttggttccaccatgtgacaataaagaataccgtatttattgagggcattaaccatataaagtcccaattctttagggttggagtctccac |
1071543 |
T |
|
| Q |
233 |
attctgcatactccgcaaaaggtgataatcttatcccaactctttcttctcctatctcatttgcaacagct |
303 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
1071542 |
attctgaatactctgcaaaaggtgataatcttattccaactctttctgttcctatctcatttgcaacagct |
1071472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 33 - 303
Target Start/End: Complemental strand, 1058923 - 1058653
Alignment:
| Q |
33 |
cccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaaca |
132 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||| || ||||| |||| |
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| T |
1058923 |
cccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgtgagagcattcaattctttcattaaca |
1058824 |
T |
|
| Q |
133 |
gttttcattcttggttccaccatatgacagtaaagaatgccatatttattgagggcattgaccatatagagtcccaattcattggggttggagtctccac |
232 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| |||| || |||||| ||| |
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| T |
1058823 |
gttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacac |
1058724 |
T |
|
| Q |
233 |
attctgcatactccgcaaaaggtgataatcttatcccaactctttcttctcctatctcatttgcaacagct |
303 |
Q |
| |
|
|||||||||| || | ||||||||||||||| || ||| ||| ||| | ||||||||||||||||||||| |
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| T |
1058723 |
attctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagct |
1058653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 33 - 302
Target Start/End: Complemental strand, 1034013 - 1033744
Alignment:
| Q |
33 |
cccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaaca |
132 |
Q |
| |
|
|||||| |||| ||| |||||||| |||||||||||||| || ||||| ||||||||||| ||||| || |||| |||| |||| | ||||| || |
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| T |
1034013 |
cccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcctttctcatgggcaccagactgtaagggctttcaatcgtttcatcattt |
1033914 |
T |
|
| Q |
133 |
gttttcattcttggttccaccatatgacagtaaagaatgccatatttattgagggcattgaccatatagagtcccaattcattggggttggagtctccac |
232 |
Q |
| |
|
| ||| ||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||| |||||||||| | |
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| T |
1033913 |
gattttattcttggttccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatataaagtcccaattctgtgggattggagtctctag |
1033814 |
T |
|
| Q |
233 |
attctgcatactccgcaaaaggtgataatcttatcccaactctttcttctcctatctcatttgcaacagc |
302 |
Q |
| |
|
|||||| || |||||||||||||||||||| || |||||||||||| ||||||||||||| ||||||| |
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|
| T |
1033813 |
attctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagc |
1033744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 112 - 303
Target Start/End: Complemental strand, 1053579 - 1053388
Alignment:
| Q |
112 |
cattcagttttttcaccaacagttttcattcttggttccaccatatgacagtaaagaatgccatatttattgagggcattgaccatatagagtcccaatt |
211 |
Q |
| |
|
||||||||||| ||| ||| | ||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
1053579 |
cattcagttttctcatcaagaatttccattcttggttccaccatatgacaataaagaataccatatttattgagggcattcaccatataaagtcccaatt |
1053480 |
T |
|
| Q |
212 |
cattggggttggagtctccacattctgcatactccgcaaaaggtgataatcttatcccaactctttcttctcctatctcatttgcaacagct |
303 |
Q |
| |
|
| | ||| || ||||||||||| ||| || | | |||||||||||||| |||| |||||||||||| | ||||||||||||||||||||| |
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| T |
1053479 |
cttggggatttgagtctccacaatctccaaatttttcaaaaggtgataattttattccaactctttctgcacctatctcatttgcaacagct |
1053388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 52 - 293
Target Start/End: Complemental strand, 1044381 - 1044140
Alignment:
| Q |
52 |
cctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaacagttttcattcttggttcca |
151 |
Q |
| |
|
||||||||| ||||||||| ||| ||||| ||||||||||||||||| || |||| |||| |||| | ||||| | | | ||| ||||||||||||| |
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|
| T |
1044381 |
cctcctgcagccatgaaagagccattgaaagcctttctcattggcaccagactgtaagggctttcaatcgtttcagaagctgattttattcttggttcca |
1044282 |
T |
|
| Q |
152 |
ccatatgacagtaaagaatgccatatttattgagggcattgaccatatagagtcccaattcattggggttggagtctccacattctgcatactccgcaaa |
251 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| ||||||||||| | ||||||||| || ||||| |
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|
| T |
1044281 |
ccatgtgacagtaaagaatattgtacttattgagggcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgcaaa |
1044182 |
T |
|
| Q |
252 |
aggtgataatcttatcccaactctttcttctcctatctcatt |
293 |
Q |
| |
|
|||||||| ||| || |||||| | ||| ||||||||||||| |
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|
| T |
1044181 |
aggtgatagtctaattccaactttatctgctcctatctcatt |
1044140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 52 - 293
Target Start/End: Original strand, 1640562 - 1640803
Alignment:
| Q |
52 |
cctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaacagttttcattcttggttcca |
151 |
Q |
| |
|
||||| ||||| || ||||| || |||||||| |||||||||||||| | ||||| | |||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
1640562 |
cctccggcaactataaaagttccattgaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttcca |
1640661 |
T |
|
| Q |
152 |
ccatatgacagtaaagaatgccatatttattgagggcattgaccatatagagtcccaattcattggggttggagtctccacattctgcatactccgcaaa |
251 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||||| |||||||| || |||||||| | || |||||||||||||||||| |||| || || || |
|
|
| T |
1640662 |
ccatgtgacagtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgcgaa |
1640761 |
T |
|
| Q |
252 |
aggtgataatcttatcccaactctttcttctcctatctcatt |
293 |
Q |
| |
|
||| |||||||| || |||||||||||| | ||||||||||| |
|
|
| T |
1640762 |
aggcgataatctaattccaactctttctgcacctatctcatt |
1640803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 303
Target Start/End: Complemental strand, 1046865 - 1046713
Alignment:
| Q |
151 |
accatatgacagtaaagaatgccatatttattgagggcattgaccatatagagtcccaattcattggggttggagtctccacattctgcatactccgcaa |
250 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||||| ||||| || || |||||| | || || || ||||||||||||||| | | || | || |
|
|
| T |
1046865 |
accatatgacaatacagaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattcttcgaaatctgaaa |
1046766 |
T |
|
| Q |
251 |
aaggtgataatcttatcccaactctttcttctcctatctcatttgcaacagct |
303 |
Q |
| |
|
||||||||| | |||| ||||||||||| | || ||||||||| |||||||| |
|
|
| T |
1046765 |
aaggtgatagttttattccaactctttcggcaccaatctcatttacaacagct |
1046713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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