View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0631_low_25 (Length: 305)
Name: NF0631_low_25
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0631_low_25 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 29 - 305
Target Start/End: Complemental strand, 42760022 - 42759746
Alignment:
| Q |
29 |
aatctgttaaccctaaaataatttggctccaaagtatttggctgtttgaattcaaaataatgcaattattgtggtctgcttagtttaccgtgttttatgt |
128 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42760022 |
aatctgttagccctaaaataatttggctccaaagtatttggctgtttgaattcaaaataatgcaattattgtggtctgcttagtttaccttgttttatgt |
42759923 |
T |
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| Q |
129 |
aaacctttagtttttcatttagtttgtatttgtatttcaaaattccccttgcttgaatagagcacaacagtaattaagggctattgaactttcgttttga |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||| |
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| T |
42759922 |
aaacctttagtttttcatttagtttgtatttgtatttcgaaattccccttgcttgaatagagcacaacattagttaagggttattgaactttcgttttga |
42759823 |
T |
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| Q |
229 |
aaactaacacatctatccatatgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgt |
305 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42759822 |
aaaccaacacatctatccatctgtaatcctctttttcccatgcatattaacacaatcatgcactttattccctctgt |
42759746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 34 - 305
Target Start/End: Original strand, 1401831 - 1402102
Alignment:
| Q |
34 |
gttaaccctaaaataatttggctccaaagtatttggctgtttgaattcaaaataatgcaattattgtggtctgcttagtttaccgtgttttatgtaaacc |
133 |
Q |
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| T |
1401831 |
gttaaccttaaaataatttggctccaaagtatttgactgtttgaattcaaaataatgcaattattgtggtctgcttagtttaccgtgttttatgtaaacc |
1401930 |
T |
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| Q |
134 |
tttagtttttcatttagtttgtatttgtatttcaaaattccccttgcttgaatagagcacaacagtaattaagggctattgaactttcgttttgaaaact |
233 |
Q |
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| T |
1401931 |
tttagttttccatttagtttgtatttgtatttcaaaattccccttgcttgaatacaacacaacattaatcaagggctattgaactttcgttttgaaaacc |
1402030 |
T |
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| Q |
234 |
aacacatctatccatatgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgt |
305 |
Q |
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| T |
1402031 |
aacacatctatccatatgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgt |
1402102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 56478900 - 56478858
Alignment:
| Q |
36 |
taaccctaaaataatttggctccaaagtatttggctgtttgaa |
78 |
Q |
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| T |
56478900 |
taacccttaaaaaatttggctccaaagtatttggctgtttgaa |
56478858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 23261040 - 23261082
Alignment:
| Q |
36 |
taaccctaaaataatttggctccaaagtatttggctgtttgaa |
78 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
23261040 |
taacccttaaaaaatttggctccaaagtatttggctgtttgaa |
23261082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 445590 - 445546
Alignment:
| Q |
34 |
gttaaccctaaaataatttggctccaaagtatttggctgtttgaa |
78 |
Q |
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||||||||||| | | ||||||||||||||||||||||||||||| |
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| T |
445590 |
gttaaccctaagaaattttggctccaaagtatttggctgtttgaa |
445546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 11646557 - 11646513
Alignment:
| Q |
34 |
gttaaccctaaaataatttggctccaaagtatttggctgtttgaa |
78 |
Q |
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||||||||||||||||||| || |||||||||||| |||||||| |
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| T |
11646557 |
gttaaccctaaaataatttcgcctcaaagtatttggttgtttgaa |
11646513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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