View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0631_low_31 (Length: 262)
Name: NF0631_low_31
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0631_low_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 51293402 - 51293631
Alignment:
| Q |
5 |
tcaatcatataaaatcgacatgaaacataagcattacctccacttacaaacctataatgtttagactttatctcattggaatcttaacaattcaaaccgc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51293402 |
tcaatcatataaaatcgacatgaaacataagcattacctccacttacaaacctataatgtttagactttatctcattggaatcttaacaattcaaaccgc |
51293501 |
T |
|
| Q |
105 |
caaactatatcttgttgaataagttacatatagtaatagtagtactaagttaattgatgaaaaattccatagaattattcacatttaatattacgacaga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51293502 |
caaactatatcttgttgaataagttacatatagtaatagtagtactaagttaattgatgaaaaattccatagaattattcacatttaatattacgacaga |
51293601 |
T |
|
| Q |
205 |
ccttctaatcttgttggtgaagtagttagt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
51293602 |
ccttctaatcttgttggtgaagtagttagt |
51293631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 665 times since January 2019
Visitors: 4098