View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0631_low_35 (Length: 251)

Name: NF0631_low_35
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0631_low_35
NF0631_low_35
[»] chr8 (11 HSPs)
chr8 (3-250)||(4565197-4565444)
chr8 (32-204)||(16214713-16214886)
chr8 (26-225)||(14666667-14666866)
chr8 (12-233)||(24576397-24576617)
chr8 (20-168)||(24677432-24677580)
chr8 (20-163)||(17715697-17715840)
chr8 (20-231)||(20055623-20055833)
chr8 (174-251)||(23243823-23243900)
chr8 (129-233)||(11776173-11776277)
chr8 (129-229)||(21416799-21416899)
chr8 (129-208)||(3459415-3459492)
[»] chr6 (21 HSPs)
chr6 (20-251)||(12424135-12424366)
chr6 (20-243)||(14921082-14921305)
chr6 (35-251)||(22497134-22497350)
chr6 (3-225)||(18994044-18994266)
chr6 (22-251)||(27860771-27861000)
chr6 (98-217)||(14184455-14184574)
chr6 (119-233)||(19276997-19277110)
chr6 (123-231)||(13823304-13823410)
chr6 (136-233)||(34064252-34064349)
chr6 (174-233)||(9403229-9403288)
chr6 (119-233)||(12449503-12449617)
chr6 (174-233)||(19730566-19730625)
chr6 (129-251)||(16343618-16343740)
chr6 (104-230)||(31295440-31295566)
chr6 (174-233)||(12487971-12488030)
chr6 (176-251)||(23768232-23768307)
chr6 (128-204)||(31423767-31423842)
chr6 (120-207)||(33596944-33597031)
chr6 (129-207)||(16131051-16131129)
chr6 (138-204)||(22572130-22572196)
chr6 (168-229)||(19305525-19305586)
[»] chr7 (18 HSPs)
chr7 (20-251)||(5925296-5925527)
chr7 (25-251)||(1979101-1979328)
chr7 (36-251)||(18774020-18774235)
chr7 (20-229)||(12264946-12265155)
chr7 (78-239)||(4781379-4781540)
chr7 (78-239)||(4813810-4813971)
chr7 (35-231)||(20034374-20034570)
chr7 (79-239)||(23629096-23629256)
chr7 (131-250)||(13292055-13292174)
chr7 (129-233)||(16987022-16987126)
chr7 (179-251)||(5928991-5929063)
chr7 (95-224)||(17150026-17150155)
chr7 (174-233)||(34854300-34854359)
chr7 (130-222)||(12644854-12644946)
chr7 (129-207)||(9135291-9135369)
chr7 (166-233)||(10287563-10287630)
chr7 (35-115)||(20044773-20044853)
chr7 (168-228)||(43172005-43172065)
[»] chr4 (16 HSPs)
chr4 (12-251)||(1638131-1638370)
chr4 (19-243)||(18463847-18464071)
chr4 (19-243)||(25066191-25066415)
chr4 (35-250)||(14601851-14602066)
chr4 (35-239)||(19564012-19564216)
chr4 (103-251)||(5518579-5518727)
chr4 (46-239)||(17110748-17110941)
chr4 (129-233)||(15742083-15742187)
chr4 (136-251)||(15514498-15514613)
chr4 (67-251)||(12415475-12415658)
chr4 (174-251)||(13896454-13896531)
chr4 (129-229)||(2674504-2674604)
chr4 (129-229)||(12683846-12683946)
chr4 (129-233)||(16012402-16012505)
chr4 (136-207)||(29157185-29157256)
chr4 (133-207)||(19643785-19643859)
[»] chr2 (13 HSPs)
chr2 (20-251)||(24157127-24157358)
chr2 (20-230)||(29711076-29711286)
chr2 (26-239)||(24318963-24319176)
chr2 (104-233)||(15390490-15390619)
chr2 (33-192)||(28425973-28426132)
chr2 (131-229)||(15825215-15825313)
chr2 (105-211)||(19290546-19290651)
chr2 (129-229)||(18772309-18772409)
chr2 (174-233)||(19050410-19050469)
chr2 (104-229)||(10923070-10923195)
chr2 (169-233)||(18135928-18135992)
chr2 (130-229)||(3586424-3586523)
chr2 (174-207)||(36267581-36267614)
[»] chr1 (10 HSPs)
chr1 (33-239)||(3590877-3591084)
chr1 (20-217)||(48637612-48637809)
chr1 (33-229)||(21098680-21098876)
chr1 (40-250)||(25408136-25408346)
chr1 (169-233)||(23728790-23728854)
chr1 (110-229)||(4601398-4601517)
chr1 (129-217)||(14254972-14255060)
chr1 (113-233)||(21682504-21682624)
chr1 (136-229)||(12177447-12177540)
chr1 (140-207)||(26977823-26977890)
[»] scaffold0103 (1 HSPs)
scaffold0103 (22-251)||(40835-41064)
[»] chr3 (14 HSPs)
chr3 (20-251)||(20118798-20119029)
chr3 (21-241)||(20122601-20122821)
chr3 (45-217)||(17396796-17396968)
chr3 (129-233)||(14860029-14860133)
chr3 (129-233)||(12731491-12731595)
chr3 (106-233)||(25495995-25496122)
chr3 (104-229)||(12516246-12516371)
chr3 (129-209)||(12108500-12108580)
chr3 (104-207)||(20622491-20622594)
chr3 (167-229)||(16704463-16704525)
chr3 (107-160)||(7835482-7835535)
chr3 (129-229)||(1770886-1770987)
chr3 (167-229)||(30606989-30607051)
chr3 (168-229)||(431285-431346)
[»] scaffold0005 (1 HSPs)
scaffold0005 (35-250)||(215312-215527)
[»] scaffold0096 (1 HSPs)
scaffold0096 (22-229)||(42309-42516)
[»] chr5 (12 HSPs)
chr5 (121-225)||(18799844-18799948)
chr5 (33-225)||(18803982-18804174)
chr5 (95-227)||(21213306-21213438)
chr5 (95-225)||(25679142-25679272)
chr5 (61-217)||(26347953-26348109)
chr5 (35-233)||(24546399-24546597)
chr5 (104-233)||(25828893-25829022)
chr5 (104-233)||(22865818-22865947)
chr5 (166-251)||(24647327-24647412)
chr5 (129-230)||(25537465-25537566)
chr5 (104-230)||(31202280-31202407)
chr5 (167-207)||(26994574-26994614)
[»] scaffold0543 (1 HSPs)
scaffold0543 (38-221)||(4784-4970)
[»] scaffold0492 (1 HSPs)
scaffold0492 (38-221)||(6330-6516)
[»] scaffold0074 (1 HSPs)
scaffold0074 (78-225)||(53152-53299)
[»] scaffold0013 (2 HSPs)
scaffold0013 (19-117)||(4273-4371)
scaffold0013 (174-250)||(4399-4475)
[»] scaffold0380 (1 HSPs)
scaffold0380 (129-233)||(6790-6894)
[»] scaffold0092 (1 HSPs)
scaffold0092 (20-250)||(21439-21669)
[»] scaffold0205 (2 HSPs)
scaffold0205 (174-251)||(10890-10967)
scaffold0205 (104-233)||(22943-23072)
[»] scaffold0479 (1 HSPs)
scaffold0479 (129-233)||(5095-5199)
[»] scaffold0002 (2 HSPs)
scaffold0002 (169-233)||(379773-379837)
scaffold0002 (166-229)||(120978-121041)
[»] scaffold0464 (1 HSPs)
scaffold0464 (129-229)||(11574-11673)
[»] scaffold0294 (1 HSPs)
scaffold0294 (129-233)||(172-277)
[»] scaffold0518 (1 HSPs)
scaffold0518 (120-233)||(9031-9144)
[»] scaffold0140 (1 HSPs)
scaffold0140 (120-229)||(6359-6468)
[»] scaffold0291 (1 HSPs)
scaffold0291 (174-229)||(15405-15460)
[»] scaffold0360 (1 HSPs)
scaffold0360 (174-207)||(14005-14038)
[»] scaffold0263 (1 HSPs)
scaffold0263 (129-226)||(20427-20524)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 4565197 - 4565444
Alignment:
Q  3 catgtccactaatatatcgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcag 102  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4565197 catgtacaataatatatcgccttaaggccacacactcaagggagcacgccaacttacctgcgccatgcaacactggagcacgcctccttgttgggatcag 4565296  T
Q  103 gctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctca 202  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4565297 gctacacgtgtcctttcccgctccggatcacacgccgcataacccggagacagttatgccacgagcgcgcttatataagggtgaacttgcttcaccctca 4565396  T
Q  203 aggtacacaacacttttcacaacacttcttagactttctctttcagtt 250  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4565397 aggtacacaacacttttcacaacacttcttatactttctctttcagtt 4565444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 16214886 - 16214713
Alignment:
Q  32 acacactcaagggagcacgccaa-cttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgat 130  Q
    |||||||||| |||||||| ||| ||  |||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||  | | | |||| |     
T  16214886 acacactcaaaggagcacgacaaactcgcctgcgccgtgcaacagtggagcacacctccttgtcgggatcatgctacacgtgtccactcctgttcctaac 16214787  T
Q  131 cacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaag 204  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  16214786 cacacaccgcataacccggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaccttcaag 16214713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 14666667 - 14666866
Alignment:
Q  26 aaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctc 125  Q
    ||||||||||||||||||||||||| |||||  | |||||| ||| ||||||||  | || ||||||  | ||||| |||||||||||||  | || |||    
T  14666667 aaggccacacactcaagggagcacgtcaactcgcatgcgccatgccacactggactatgcttccttgccgagatcacgctacacgtgtccactccctctc 14666766  T
Q  126 ctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaac 225  Q
     | |||| || | ||||||||||||||| ||||||||| ||| |||| || |||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  14666767 ttaatcatacacagcataacccggagactgttatgccaagagtgcgcctacataagggtgaactttcttcacccttaaggtacacaaaacttttcacaac 14666866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 24576397 - 24576617
Alignment:
Q  12 taatatatcgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgt 111  Q
    |||||| |||||||||||| ||   ||||||||| || ||||| || |||||  ||||| |||  || |||| |||||| |   |||||| ||||| | |    
T  24576397 taatatgtcgccttaaggctacgtgctcaagggatcaggccaattttcctgcatcgtgccacataggtgcacacctcctcgcaaggatcacgctac-cat 24576495  T
Q  112 gtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacaca 211  Q
    |||||| ||||||||| |||||||| ||||||||| |||| ||||||||      ||| || ||||||||||||||||| ||||||||||||||||||||    
T  24576496 gtccttctccgctcctaatcacacgtcgcataacctggaggcggttatgatcaacgcgtgcctatataagggtgaacttccttcaccctcaaggtacaca 24576595  T
Q  212 acacttttcacaacacttctta 233  Q
      ||||||||||||||||||||    
T  24576596 ttacttttcacaacacttctta 24576617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 24677432 - 24677580
Alignment:
Q  20 cgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttt 119  Q
    ||||||||||| || || |||| | ||||| ||||| | |||||| ||||| ||||| ||| | |||||||||  ||||||| |||||| ||||||||      
T  24677432 cgccttaaggctacgcattcaaagaagcacaccaacctgcctgcgtcgtgccacactagagtatgcctccttgccgggatcatgctacatgtgtccttcc 24677531  T
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagc 168  Q
     ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  24677532 acgctcctaatcacacgccgcataacccagagacggttatgccacgagc 24677580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 17715697 - 17715840
Alignment:
Q  20 cgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttt 119  Q
    ||||| |||||| ||||||||| |||||||||| |||  | |||| ||||| ||||||||| | |||||| ||| ||||||| |||||| ||||||  |     
T  17715697 cgcctaaaggcctcacactcaaaggagcacgcctactcgcatgcgtcgtgctacactggagtaagcctccctgtcgggatcatgctacatgtgtccactc 17715796  T
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatgcca 163  Q
    |||||| | |||| ||||||||||||||| || |||||||||||    
T  17715797 ccgctcttaatcatacgccgcataacccgaaggcggttatgcca 17715840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 20055833 - 20055623
Alignment:
Q  20 cgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttt 119  Q
    ||||||||||| |||||||||| ||||||||||| ||| | ||| |||||| |||  | |||||  |||||||  |||||||   |||||||||||  |     
T  20055833 cgccttaaggctacacactcaaaggagcacgccagcttgcgtgcaccgtgccacaaagtagcacatctccttgccgggatcacattacacgtgtcccata 20055734  T
Q  120 -ccgctcctgatcacacgccgcataacccggagacggttatgc-cacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactt 217  Q
     |||| ||| |||| || ||||||  | |||||| |||||||| || | |||||| ||||||||| ||||||||||||||||| |||||||||| |||||    
T  20055733 accgc-cctaatcataccccgcatctcacggagatggttatgctcaag-gcgcgcctatataaggatgaacttgcttcaccct-aaggtacacatcactt 20055637  T
Q  218 ttcacaacacttct 231  Q
    ||||||||||||||    
T  20055636 ttcacaacacttct 20055623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 23243900 - 23243823
Alignment:
Q  174 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttc 251  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||| ||  | |||||||||||    
T  23243900 tatataagagtgaacttgcttcaccctcaagatacacatcacttttcacaacacttcttacacactatctttcagttc 23243823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 11776173 - 11776277
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    |||||||||||||| | |||||||||||||||||    |||| | ||||||| |||||||||| ||||||||||||||||| | |||||||| |||||||    
T  11776173 atcacacgccgcattatccggagacggttatgcccaacgcgcacctatataaaggtgaacttgtttcaccctcaaggtacatatcacttttcccaacact 11776272  T
Q  229 tctta 233  Q
     ||||    
T  11776273 cctta 11776277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 21416899 - 21416799
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    |||||| |||||||||||||||||||||||||||    |||| | |||| |||||||||||||||||||||| |||||||    || |||||||||||||    
T  21416899 atcacaggccgcataacccggagacggttatgcccaacgcgcccctatacaagggtgaacttgcttcacccttaaggtacgattcatttttcacaacact 21416800  T
Q  229 t 229  Q
    |    
T  21416799 t 21416799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 3459415 - 3459492
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtac 208  Q
    ||||||||||||||||||| |||||||||| | | | | ||||| ||||||||||||||||||||||| |||||||||||    
T  3459415 atcacacgccgcataacccagagacggttacgac-caaccgcgcctatataagggtgaacttgcttca-cctcaaggtac 3459492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 12424135 - 12424366
Alignment:
Q  20 cgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttt 119  Q
    ||||||| ||| || ||| ||| ||||||| ||||||| |  ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||     
T  12424135 cgccttagggctacgcacccaaaggagcacaccaacttgcacgcgccgtgcaacactggagtacgcctccttgatgggatcacgctacacgtgtcctttc 12424234  T
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactttt 219  Q
    ||||| || |||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  12424235 ccgcttctaatcacatgccgcataacccggagacggttatgtcacgagcgcgcctatataagggtgaacttgcttcacccttaaggtacacaacactttt 12424334  T
Q  220 cacaacacttcttagactttctctttcagttc 251  Q
    |||||||||| ||||||||||||| |||||||    
T  12424335 cacaacactttttagactttctctctcagttc 12424366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 14921082 - 14921305
Alignment:
Q  20 cgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttt 119  Q
    |||||||||||  ||||||||| ||||||| ||||| |  |||| |||||||| ||   |||||||||| |||||||||||| || ||||||||||||      
T  14921082 cgccttaaggctgcacactcaaaggagcacaccaacatgtctgcaccgtgcaataccatagcacgcctcattgttgggatcacgcaacacgtgtccttcc 14921181  T
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactttt 219  Q
    |||||||| |||| |||||||||||| || |||||||||||||| |||| ||| |||||||| ||||||||||||||||||| | | |||||||||||||    
T  14921182 ccgctcctaatcatacgccgcataactcgaagacggttatgccatgagcacgcctatataagtgtgaacttgcttcaccctccaaggacacaacactttt 14921281  T
Q  220 cacaacacttcttagactttctct 243  Q
    |||| ||||||||| |||||||||    
T  14921282 cacatcacttcttacactttctct 14921305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 22497134 - 22497350
Alignment:
Q  35 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 134  Q
    ||||||| |||||||| || ||| | ||||  |||| |||  ||| ||||| |||||| || ||||| |||||||||| |||| ||||| ||| ||||||    
T  22497134 cactcaaaggagcacgtcagcttgcatgcgttgtgccacataggaacacgcttccttgctgagatcacgctacacgtgcccttctccgcccctaatcaca 22497233  T
Q  135 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttag 234  Q
    || |||||||||| |||| |||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  22497234 cgtcgcataacccagagatggttatgccatgagcgtgtctatatatgggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactttttat 22497333  T
Q  235 actttctctttcagttc 251  Q
    ||| |||||||| ||||    
T  22497334 actctctctttctgttc 22497350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 18994266 - 18994044
Alignment:
Q  3 catgtccactaatatatcgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcag 102  Q
    ||||| || |||||| ||||||| |||  || ||||||| |||||| || ||||  |||||| ||||| |||||||||||| ||||||||  |||||||     
T  18994266 catgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcac 18994167  T
Q  103 gctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctca 202  Q
    ||||||  |||||  | |||||||| |||| || |||||||| | ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  18994166 gctacatttgtccactcccgctcctaatcaaacaccgcataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctca 18994067  T
Q  203 aggtacacaacacttttcacaac 225  Q
     |||||||||||||||| |||||    
T  18994066 gggtacacaacacttttaacaac 18994044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 27860771 - 27861000
Alignment:
Q  22 ccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttcc 121  Q
    ||||||| | || ||||||||||| |||||||| || ||||| || ||| |||| ||||||| |||||| |    |||||   ||||| |||||||  ||    
T  27860771 ccttaagactacgcactcaagggaacacgccaagttgcctgcaccatgccacacaggagcacacctcctcgcaaagatcactatacacctgtccttcccc 27860870  T
Q  122 gctcctgatcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttc 220  Q
    |||||| |||||||||||||||||||||||||||||||| |||  | ||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  27860871 gctcctaatcacacgccgcataacccggagacggttatggccaaca-cgcgcctataaaagggtgaacttgcttcaccctcaaagtacacatcacttttc 27860969  T
Q  221 acaacacttcttagactttctctttcagttc 251  Q
    ||||||||||||| ||| |||||||||||||    
T  27860970 acaacacttcttacactctctctttcagttc 27861000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 14184455 - 14184574
Alignment:
Q  98 atcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcac 197  Q
    |||| |||||||||||||  | ||| |||| |||||||||| ||||||||| ||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  14184455 atcacgctacacgtgtccactcccgttcctaatcacacgcctcataacccgaagatggttatgccacgagcgcacctatataagggtgaacttgcttcac 14184554  T
Q  198 cctcaaggtacacaacactt 217  Q
    ||||||||||||||||||||    
T  14184555 cctcaaggtacacaacactt 14184574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 19276997 - 19277110
Alignment:
Q  119 tccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttt 218  Q
    ||||||||| |||| ||||||||||||| | ||||||||||| |   ||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  19276997 tccgctcctaatcatacgccgcataaccag-agacggttatgaccaaagcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttt 19277095  T
Q  219 tcacaacacttctta 233  Q
    |||||||||||||||    
T  19277096 tcacaacacttctta 19277110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 13823304 - 13823410
Alignment:
Q  123 ctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcac 222  Q
    ||||| |||| |||||||||||| |||||||||||||||||  || |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  13823304 ctccttatcatacgccgcataactcggagacggttatgcca--agtgcgcctatataaaggtgaacttgcttcaccctcaaggtacacaacactttttac 13823401  T
Q  223 aacacttct 231  Q
    |||| ||||    
T  13823402 aacaattct 13823410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 34064349 - 34064252
Alignment:
Q  136 gccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    |||||||||||||| |||||||||| |     ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34064349 gccgcataacccggtgacggttatggccaactcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttctta 34064252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 9403288 - 9403229
Alignment:
Q  174 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  9403288 tatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttctta 9403229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 12449503 - 12449617
Alignment:
Q  119 tccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttt 218  Q
    ||||| ||| ||||||| | |||||||| |||||| |||||| |    |||||| ||||||||||| |||||| ||||||||||||||||||| ||||||    
T  12449503 tccgcccctaatcacacactgcataacctggagacagttatgaccaacgcgcgcctatataagggtaaacttgattcaccctcaaggtacacatcacttt 12449602  T
Q  219 tcacaacacttctta 233  Q
     ||||||||||||||    
T  12449603 ccacaacacttctta 12449617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 19730566 - 19730625
Alignment:
Q  174 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  19730566 tatataagggtgaacttgcttcaccctcaaggtacacatcactttacacgacacttctta 19730625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 16343740 - 16343618
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    |||| |||||||||  | |||||||||||||||     ||| || |||||||| |||||||||||||||  |||| ||||||| |||||| |||||||||    
T  16343740 atcatacgccgcatctcacggagacggttatgctcaacgcgtgcctatataagtgtgaacttgcttcacattcaaagtacacatcactttccacaacact 16343641  T
Q  229 tcttagactttctctttcagttc 251  Q
    ||||| ||||||||| |||||||    
T  16343640 tcttacactttctctctcagttc 16343618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 230
Target Start/End: Original strand, 31295440 - 31295566
Alignment:
Q  104 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaa 203  Q
    ||||||||||| |  |||| |||| ||||||||  |||||||||| ||||||||||| |     | ||| ||| |||||||||||||||||||||||| |    
T  31295440 ctacacgtgtcttgctccgttcctaatcacacgaagcataacccgaagacggttatggccaacccccgcctatgtaagggtgaacttgcttcaccctcga 31295539  T
Q  204 ggtacacaacacttttcacaacacttc 230  Q
    |||||| | ||||||||||||||||||    
T  31295540 ggtacatatcacttttcacaacacttc 31295566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 12487971 - 12488030
Alignment:
Q  174 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    ||||||||||||||||||  |||||||||| ||||||| |||||||||||||||| ||||    
T  12487971 tatataagggtgaacttgtatcaccctcaatgtacacatcacttttcacaacactactta 12488030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 23768307 - 23768232
Alignment:
Q  176 tataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttc 251  Q
    ||||||||||||||||||| |||||  ||||||||| |||||| |||||||||||||| ||  | |||||||||||    
T  23768307 tataagggtgaacttgctttacccttgaggtacacatcactttccacaacacttcttacacactatctttcagttc 23768232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 31423767 - 31423842
Alignment:
Q  128 gatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaag 204  Q
    ||||||||| ||||||||||||| ||||| |||||     ||||| |||||||||||| ||||||||||||||||||    
T  31423767 gatcacacgtcgcataacccggacacggt-atgcccaacacgcgcctatataagggtgcacttgcttcaccctcaag 31423842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 33597031 - 33596944
Alignment:
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggta 207  Q
    |||| ||| |||| ||||||||||| |||| |||  ||||||    ||||||| |||||||| |||||||||||||| ||||||||||    
T  33597031 ccgcccctaatcatacgccgcataatccggtgacaattatgctcaaagcgcgcctatataagagtgaacttgcttcatcctcaaggta 33596944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 16131129 - 16131051
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggta 207  Q
    |||||| ||| ||||| |||||||| |||||||     |||||| ||||||||||| |||||| |||||||||||||||    
T  16131129 atcacatgccacataatccggagacagttatgcttaatgcgcgcctatataagggtaaacttgtttcaccctcaaggta 16131051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 22572196 - 22572130
Alignment:
Q  138 cgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaag 204  Q
    ||||||||| ||||||||||||||     ||||||  |||||| |||||||||||||||||||||||    
T  22572196 cgcataacctggagacggttatgctcaacgcgcgccaatataaaggtgaacttgcttcaccctcaag 22572130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 19305586 - 19305525
Alignment:
Q  168 cgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 229  Q
    ||||| ||| ||||||||| ||||||||||||||||||||     |||||||||||||||||    
T  19305586 cgcgcctatttaagggtgaccttgcttcaccctcaaggtatgattcacttttcacaacactt 19305525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 5925296 - 5925527
Alignment:
Q  20 cgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttt 119  Q
    ||||| ||||| || ||||||| |||||||| |||||| ||| |   |||||||||||||| ||||||||||   ||||||| |||||||||||||||||    
T  5925296 cgcctcaaggctacgcactcaaaggagcacgacaacttgcctactatgtgcaacactggagtacgcctccttcccgggatcacgctacacgtgtcctttt 5925395  T
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactttt 219  Q
    ||||  | ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  5925396 ccgcctcagatcacacgccgcataacccggagacggttatgccacgagcgcgcctacataagggtgaacttgcttcaccctcaaggaacacaacactttt 5925495  T
Q  220 cacaacacttcttagactttctctttcagttc 251  Q
    ||| |||||||||||||||||||| |||||||    
T  5925496 cacgacacttcttagactttctctctcagttc 5925527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 1979328 - 1979101
Alignment:
Q  25 taaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgct 124  Q
    |||||| |||||||||| ||||||||||||| | | |||| ||||| |||||||| ||| ||||||||  ||||||| |||||| ||||||||| || ||    
T  1979328 taaggctacacactcaaaggagcacgccaacctgcgtgcgtcgtgcgacactggaccacacctccttgccgggatcatgctacatgtgtcctttcccact 1979229  T
Q  125 cctga-tcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 223  Q
    ||| | ||||||||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||| | |||  ||||||||||| ||||||    
T  1979228 cctaaatcacacgccgcataacccgcagacggttatgccacgagcgtgcctatataaaggtgaacttgcttcactcccaatatacacaacactcttcaca 1979129  T
Q  224 acacttcttagactttctctttcagttc 251  Q
    |||||||||||||||||||| |||||||    
T  1979128 acacttcttagactttctctctcagttc 1979101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 18774235 - 18774020
Alignment:
Q  36 actcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacac 135  Q
    |||||||||| |||||||||| | ||||| ||||| |||||||||||||||||||||  |||||||  ||||||||||||  | || ||||| |||| ||    
T  18774235 actcaagggaacacgccaactcatctgcgtcgtgccacactggagcacgcctccttgacgggatcacactacacgtgtccactcccactcctaatcatac 18774136  T
Q  136 gccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttaga 235  Q
    |||||||||| ||||||||||||||||| |||| ||  |||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||    
T  18774135 gccgcataactcggagacggttatgccaagagcacgtctatataagggtgaatttgtttcaccctcaaggtacacaacacttttcactacacttctttga 18774036  T
Q  236 ctttctctttcagttc 251  Q
    |||||||| |||||||    
T  18774035 ctttctctctcagttc 18774020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 12264946 - 12265155
Alignment:
Q  20 cgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttt 119  Q
    |||||| |||| |||||||||||||||||||||||||| | ||||||||| | ||| ||||||||||||||||| ||||||| |||| | ||||||||      
T  12264946 cgccttcaggctacacactcaagggagcacgccaacttgcatgcgccgtgtaccacaggagcacgcctccttgtcgggatcacgctatatgtgtccttcc 12265045  T
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactttt 219  Q
    ||   ||| |||| ||||||||||||||||||| ||||||||  |||||| || ||||||||||||||||||||| ||||||||||||| || |||||||    
T  12265046 ccatccctaatcatacgccgcataacccggagatggttatgcttcgagcgtgcctatataagggtgaacttgcttgaccctcaaggtacgcatcactttt 12265145  T
Q  220 cacaacactt 229  Q
    ||||||||||    
T  12265146 cacaacactt 12265155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 4781379 - 4781540
Alignment:
Q  78 gagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttata 177  Q
    |||||||||||| ||| ||||||| ||||||||||| | || |||||||| |||| |||||| |||| |||  || |||||||||| ||| |||| ||||    
T  4781379 gagcacgcctccctgtcgggatcacgctacacgtgttcattcccgctcctaatcatacgccgtataatccgaggatggttatgccaagagtgcgcctata 4781478  T
Q  178 taagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagacttt 239  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| || || |||||||    
T  4781479 taagggtgaacttgcttcaccctcaaggtacacaacactttacacaactctcctaagacttt 4781540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 4813810 - 4813971
Alignment:
Q  78 gagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttata 177  Q
    |||||||||||| ||| ||||||| ||||||||||| | || |||||||| |||| |||||| |||| |||  || |||||||||| ||| |||| ||||    
T  4813810 gagcacgcctccctgtcgggatcacgctacacgtgttcattcccgctcctaatcatacgccgtataatccgaggatggttatgccaagagtgcgcctata 4813909  T
Q  178 taagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagacttt 239  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| || || |||||||    
T  4813910 taagggtgaacttgcttcaccctcaaggtacacaacactttacacaactctcctaagacttt 4813971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 20034570 - 20034374
Alignment:
Q  35 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 134  Q
    ||||||| |||||||||||| |  |||||| | ||| ||| |||| || || ||| ||| ||||||| ||||||| |||||  | |||||| | |||| |    
T  20034570 cactcaaaggagcacgccaattcgcctgcggcatgccacattggaccatgcttccctgtcgggatcacgctacacatgtccactcccgctcttaatcata 20034471  T
Q  135 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttct 231  Q
     ||||||||||||||||||||| |||||| ||||| || |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||    
T  20034470 tgccgcataacccggagacggtcatgccaagagcgggcctatataagggtgtacttgctttaccctcaaggtacacaacacttttcactacacttct 20034374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 23629256 - 23629096
Alignment:
Q  79 agcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatat 178  Q
    ||||||||||| ||||||||||| |||||||||||||  | |||||||| |||| |||||||||||||||||||| ||||||||| ||| |||| |||||    
T  23629256 agcacgcctccctgttgggatcacgctacacgtgtccactcccgctcctaatcatacgccgcataacccggagacagttatgccaagagagcgcctatat 23629157  T
Q  179 aagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagacttt 239  Q
    ||| | ||  |||||||||| |||||| |||||||| |||||||||| ||||| |||||||    
T  23629156 aagtgggacattgcttcaccatcaaggcacacaacaattttcacaactcttctaagacttt 23629096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 13292055 - 13292174
Alignment:
Q  131 cacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttc 230  Q
    |||||||||||||||||||||||||||||| |    |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13292055 cacacgccgcataacccggagacggttatggccaacgcgcgcctatataatggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttc 13292154  T
Q  231 ttagactttctctttcagtt 250  Q
    ||| ||  ||| ||||||||    
T  13292155 ttacacactctttttcagtt 13292174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 16987022 - 16987126
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    ||||||| |||||||| ||||||||||||||| |    |||||| ||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||    
T  16987022 atcacacaccgcataatccggagacggttatggccaacgcgcgcctatataagggtgaacttgcttcacctttaagggacacatcacttttcacaacact 16987121  T
Q  229 tctta 233  Q
    |||||    
T  16987122 tctta 16987126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 5928991 - 5929063
Alignment:
Q  179 aagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttc 251  Q
    ||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||| ||| |||||||||||||    
T  5928991 aagggtgaatttgcttcacccccaagggacacatcacttttcacaacacttcttacactctctctttcagttc 5929063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 17150155 - 17150026
Alignment:
Q  95 gggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgctt 194  Q
    ||||||| |||||||||||||  | ||| | || |||| | |||||||| ||| |||||||||| ||||  ||| ||| |||||| |||| |||||||||    
T  17150155 gggatcatgctacacgtgtccactcccgtttctaatcatatgccgcatagccctgagacggttaagccaaaagcacgcctatataggggttaacttgctt 17150056  T
Q  195 caccctcaaggtacacaacacttttcacaa 224  Q
    |||||||||| ||| ||||| |||||||||    
T  17150055 caccctcaagctacgcaacaattttcacaa 17150026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 34854359 - 34854300
Alignment:
Q  174 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    |||||||||||||||||| ||||||||||  ||||||| |||||||||||||| ||||||    
T  34854359 tatataagggtgaacttgtttcaccctcagagtacacatcacttttcacaacatttctta 34854300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 12644946 - 12644854
Alignment:
Q  130 tcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcac 222  Q
    ||||||| ||||||||||| ||||||||||| |    |||||| | || ||||||||||||||||||||||||| |||||   ||||||||||    
T  12644946 tcacacgtcgcataacccgaagacggttatgaccaacgcgcgcctctacaagggtgaacttgcttcaccctcaacgtacaattcacttttcac 12644854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 9135291 - 9135369
Alignment:
Q  129 atcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggta 207  Q
    |||||||||  ||||||||||||||||||||| |||  | || |  |||||||||||||| |||||||||||||||||||    
T  9135291 atcacacgctacataacccggagacggttatgaccaata-cgtgtctatataagggtgaatttgcttcaccctcaaggta 9135369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 10287563 - 10287630
Alignment:
Q  166 agcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    ||||||| ||||||||||| |||||| | |||||||||||||     |||||||||||||||||||||    
T  10287563 agcgcgcctatataagggtaaacttgttacaccctcaaggtatctctcacttttcacaacacttctta 10287630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 20044853 - 20044773
Alignment:
Q  35 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcc 115  Q
    ||||||| |||||||||||| |  |||||| ||| | ||| ||||||| |||||| ||| ||||||| ||||||| |||||    
T  20044853 cactcaaaggagcacgccaattcgcctgcgtcgttccacattggagcatgcctccctgtcgggatcacgctacacatgtcc 20044773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 43172005 - 43172065
Alignment:
Q  168 cgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    ||||| |||||||||||||| ||||||||||||||| |||     ||||||||||||||||    
T  43172005 cgcgcctatataagggtgaagttgcttcaccctcaatgtatgattcacttttcacaacact 43172065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 1638131 - 1638370
Alignment:
Q  12 taatatatcgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgt 111  Q
    |||||| |||||||||||| ||  |||||| ||||||||||||| |  |||| |||||| ||||  ||||||||||| |||   |||||| |||||||||    
T  1638131 taatatgtcgccttaaggctacgtactcaaaggagcacgccaacatggctgcaccgtgccacaccagagcacgcctcattgccaggatcacgctacacgt 1638230  T
Q  112 gtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacaca 211  Q
    ||||||  |||||||| |||| | ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  1638231 gtccttccccgctcctaatcatatgccgcataacccggagacggttatgccacgagcgcacctatataagggtgaacttgcttcaccctcaaggtacaca 1638330  T
Q  212 acacttttcacaacacttcttagactttctctttcagttc 251  Q
    |||||||||  ||||||||||||||||||||| |||||||    
T  1638331 acacttttcttaacacttcttagactttctctctcagttc 1638370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 18464071 - 18463847
Alignment:
Q  19 tcgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttt 118  Q
    |||||||||||| |||||||||| ||||||||||||| | |||||  ||||| ||||||||||||||||| |||| ||||||| |||| | |||| ||||    
T  18464071 tcgccttaaggctacacactcaaaggagcacgccaacatgcctgcatcgtgccacactggagcacgcctcattgtcgggatcacgctaaatgtgttcttt 18463972  T
Q  119 tccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttt 218  Q
     ||| |||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||| |||||||||||| |||||||||||||    
T  18463971 cccgatcctaatcatacgccgcataacccggagacggttatgccacaagcgcgcctatataaggatgaaattgtttcaccctcaagatacacaacacttt 18463872  T
Q  219 tcacaacacttcttagactttctct 243  Q
    |||||||||| |||| || ||||||    
T  18463871 tcacaacactccttacaccttctct 18463847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 25066415 - 25066191
Alignment:
Q  19 tcgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttt 118  Q
    |||||||||||| ||||||| || ||| ||| |||||   || ||||| ||| ||| |||||||| |||| |||  ||||||  ||||||| |||||||     
T  25066415 tcgccttaaggctacacacttaatggaacactccaacaagcccgcgccctgctacattggagcacacctcgttgacgggatcgcgctacacatgtccttc 25066316  T
Q  119 tccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttt 218  Q
     | ||||||  ||| |||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  25066315 ccggctcctagtcatacgccgcataacccagagacggttatgccacaagcgcgcctatataagggtaaacttgcttcaacctcaaggtacacaacacttt 25066216  T
Q  219 tcacaacacttcttagactttctct 243  Q
    ||||||||| ||||||| |||||||    
T  25066215 tcacaacacgtcttagattttctct 25066191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 250
Target Start/End: Original strand, 14601851 - 14602066
Alignment:
Q  35 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 134  Q
    ||||||| ||||||||||| ||| | ||| ||||||  ||| | ||||| |||||| || ||||||    |||||||||||||  |||||||| ||||||    
T  14601851 cactcaaaggagcacgccagcttgcgtgcaccgtgcctcacagaagcacacctcctcgtagggatcgccttacacgtgtccttccccgctcctaatcaca 14601950  T
Q  135 cgccgcataacccggagacggttatgc-cacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    ||||||||||||||||||| ||||||  ||  | | ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14601951 cgccgcataacccggagacagttatgatcaaca-cacggctatataaggatgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 14602049  T
Q  234 gactttctctttcagtt 250  Q
     ||  ||||||||||||    
T  14602050 cacactctctttcagtt 14602066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 19564216 - 19564012
Alignment:
Q  35 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 134  Q
    ||||||| || |||| ||||||  ||||| |||||| ||||||||||||||||||  || |||||||  ||||||||||||  | |||||||| |||| |    
T  19564216 cactcaaaggggcacaccaactcgcctgcaccgtgccacactggagcacgcctccccgtcgggatcacactacacgtgtccactcccgctcctaatcata 19564117  T
Q  135 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttag 234  Q
     |||| |||| |  ||||||||||||||| |||  | | ||||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||    
T  19564116 tgccgtataatctagagacggttatgccaagagtacacctatataacggtgaacttgcttcaccctcaaggtacacaacacttttcacaaccctcctaag 19564017  T
Q  235 acttt 239  Q
    |||||    
T  19564016 acttt 19564012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 251
Target Start/End: Complemental strand, 5518727 - 5518579
Alignment:
Q  103 gctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctca 202  Q
    |||||||||||||||  | |||||| |||| |||||  ||||||||||||||||||||||     ||||| |||||||||||||||||||||||||||||    
T  5518727 gctacacgtgtccttccctgctcctaatcatacgccttataacccggagacggttatgcccaacacgcgcctatataagggtgaacttgcttcaccctca 5518628  T
Q  203 aggtacacaacacttttcacaacacttcttagactttctctttcagttc 251  Q
    |||||| || |||||| |||||||||||||| || |||||| |||||||    
T  5518627 aggtacgcatcactttccacaacacttcttacacattctctctcagttc 5518579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 17110941 - 17110748
Alignment:
Q  46 gcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataac 145  Q
    |||||||||||  ||| || | ||| ||| |||||||||||||||||| ||||||| | |||| |||| |  |  ||||||| |||| | ||||||||||    
T  17110941 gcacgccaactcgcctacgtcatgccacattggagcacgcctccttgtcgggatcacggtacatgtgttcactctcgctcctaatcatatgccgcataac 17110842  T
Q  146 ccggagacggttatgccacgag--cgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagacttt 239  Q
     |  |||||||||||||| |||  ||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| |||||||    
T  17110841 ac--agacggttatgccaagagagcgcgcctatgtaagggtgaacttgcttcaccctcaagatacacaatacttttcgcaacacttctaagacttt 17110748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 15742083 - 15742187
Alignment:
Q  129 atcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacac 227  Q
    |||||||||||||||||||||||||||||||| |||  | ||||| |||||||||||||| ||||||||  ||||||||||||| |||||||||||||||    
T  15742083 atcacacgccgcataacccggagacggttatggccaaca-cgcgcctatataagggtgaatttgcttcagtctcaaggtacacatcacttttcacaacac 15742181  T
Q  228 ttctta 233  Q
    ||||||    
T  15742182 ttctta 15742187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 15514498 - 15514613
Alignment:
Q  136 gccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttaga 235  Q
    ||||||||||| ||||| ||||||| |  | ||| || |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |    
T  15514498 gccgcataacctggagatggttatgaccagggcgagcctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttaca 15514597  T
Q  236 ctttctctttcagttc 251  Q
    |  ||| |||||||||    
T  15514598 cactctttttcagttc 15514613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 251
Target Start/End: Complemental strand, 12415658 - 12415475
Alignment:
Q  67 gtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacga 166  Q
    |||| ||||||||||||| |||| ||   |||||| ||||||| |||||  ||| | |||| || | ||||||||||| | |||||||||||| ||| ||    
T  12415658 gtgccacactggagcacgtctccctgccaggatcacgctacacatgtccacttctgttcctaattatacgccgcataatctggagacggttattccaaga 12415559  T
Q  167 gcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttc 251  Q
     ||||  ||||||||||||||||| ||| |||||||| ||||||||||||||| ||||| || || |||| |||||| |||||||    
T  12415558 tcgcgtctatataagggtgaacttactttaccctcaaagtacacaacactttttacaactctcctaagac-ttctctctcagttc 12415475  T

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Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 13896454 - 13896531
Alignment:
Q  174 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttc 251  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||| ||  |||||||||||||    
T  13896454 tatataagggtgaactttctttaccctcaaggtacacatcactttccacaacacttcttatacaatctctttcagttc 13896531  T

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Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 2674504 - 2674604
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    ||||||||||||| || ||||||||||||||||     |||||||||||||||||||||||| ||||| ||||||||||     ||||||||||||||||    
T  2674504 atcacacgccgcaaaatccggagacggttatgctcaacgcgcgcttatataagggtgaacttacttcatcctcaaggtatgattcacttttcacaacact 2674603  T
Q  229 t 229  Q
    |    
T  2674604 t 2674604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 12683946 - 12683846
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    |||| ||| |||||||| |||||||||||||||     |||||| || |||||||||||||||||||||||| ||||||     ||||||||||||||||    
T  12683946 atcatacgtcgcataactcggagacggttatgcttaatgcgcgcctagataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacact 12683847  T
Q  229 t 229  Q
    |    
T  12683846 t 12683846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 16012402 - 16012505
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    ||||||||||||||||| |||| ||| ||||  |    |||||| ||||||||||||||||||||||| ||||||| |||| | ||||| ||||||  ||    
T  16012402 atcacacgccgcataactcggatacgattattaccaacgcgcgcctatataagggtgaacttgcttca-cctcaagatacatatcacttctcacaatgct 16012500  T
Q  229 tctta 233  Q
    |||||    
T  16012501 tctta 16012505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 29157256 - 29157185
Alignment:
Q  136 gccgcataacccggagacggttatgccacga-gcgcgcttatataagggtgaacttgcttcaccctcaaggta 207  Q
    |||||||||||| ||||||||||| || | | |||||| ||||||||||||||||| ||||||| ||||||||    
T  29157256 gccgcataacccagagacggttat-cctctacgcgcgcctatataagggtgaacttacttcaccatcaaggta 29157185  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 19643859 - 19643785
Alignment:
Q  133 cacgccgcataacccggagacggttatgccacga-gcgcgcttatataagggtgaacttgcttcaccctcaaggta 207  Q
    ||||||||||||| | ||||||||||| || | | || ||| |||||||||||||||||| |||||||||||||||    
T  19643859 cacgccgcataactcagagacggttat-cctcaacgcacgcctatataagggtgaacttgtttcaccctcaaggta 19643785  T

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Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 24157127 - 24157358
Alignment:
Q  20 cgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttt 119  Q
    ||||||||||| ||||||||||||||| || | ||| ||||||| |||||| |||| |||||||||||||| | |||||||| ||||||| |||||||      
T  24157127 cgccttaaggctacacactcaagggagtacacaaacctacctgcaccgtgccacacaggagcacgcctcctcgctgggatcacgctacacatgtccttcc 24157226  T
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttt 218  Q
    |||||||| ||||||  ||||||||||||||||| |||| | |||  | ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24157227 ccgctcctaatcacataccgcataacccggagacagttagggccaaca-cgcgcttatataagggtgaacttgcttcaccctcaaggtacacaatacttt 24157325  T
Q  219 tcacaacacttcttagactttctctttcagttc 251  Q
    ||||||||||||||||||||| ||| |||||||    
T  24157326 tcacaacacttcttagactttatctctcagttc 24157358  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 29711286 - 29711076
Alignment:
Q  20 cgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttt 119  Q
    ||||||||||| || |||||||| ||||||||||||||  |||| |||||| | || |||||| ||||||| |  ||||||| ||||||||| |||||      
T  29711286 cgccttaaggctactcactcaagagagcacgccaacttgtctgcaccgtgccatacaggagcatgcctcctcgcagggatcacgctacacgtatccttcc 29711187  T
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactttt 219  Q
    |||||||| |||||| |||||||||| |||||||||||| |||    |||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  29711186 ccgctcctaatcacatgccgcataacacggagacggttaagcccaatgcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcactttt 29711087  T
Q  220 cacaacacttc 230  Q
    |||||||||||    
T  29711086 cacaacacttc 29711076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 24319176 - 24318963
Alignment:
Q  26 aaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctc 125  Q
    |||||| |||||||||  ||| |||||||||  |||||||||||| ||||| |||||| ||||| |   ||||||| | | |||||||||  | | | ||    
T  24319176 aaggcctcacactcaaatgagtacgccaactcgcctgcgccgtgccacactagagcacacctccctaccgggatcacgtttcacgtgtccactccagttc 24319077  T
Q  126 ctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaac 225  Q
    || |||| |||  ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24319076 ctaatcatacgttgcataacccagagacggttatgccaagagcgcgcctatataagggtgaacttgcttcaccctcaatgtacacaacacttttcacaac 24318977  T
Q  226 acttcttagacttt 239  Q
     || || |||||||    
T  24318976 tctcctaagacttt 24318963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 15390490 - 15390619
Alignment:
Q  104 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaa 203  Q
    |||||||||||||  ||||  ||| |||||||  |||||||||||| |||||||||| |    |||||| ||||||||||||||||||||||||||||||    
T  15390490 ctacacgtgtcctgctccgtccctaatcacacatcgcataacccggggacggttatggcctacgcgcgcctatataagggtgaacttgcttcaccctcaa 15390589  T
Q  204 ggtacacaacacttttcacaacacttctta 233  Q
    |||||||| |||||||||||||||||||||    
T  15390590 ggtacacatcacttttcacaacacttctta 15390619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 192
Target Start/End: Original strand, 28425973 - 28426132
Alignment:
Q  33 cacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatca 132  Q
    ||||||||| || |||||||||||| |||||| ||||| |||| | ||||| ||||| ||  ||||||| ||||||| |||||  | | |||||| ||||    
T  28425973 cacactcaaaggggcacgccaacttgcctgcgtcgtgccacaccgaagcacacctccctgccgggatcatgctacacatgtccactcctgctcctaatca 28426072  T
Q  133 cacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgc 192  Q
     | ||| |||||||||||||||||||| ||  |||||||| |||||||||||||||||||    
T  28426073 tatgccacataacccggagacggttatacctagagcgcgcctatataagggtgaacttgc 28426132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 229
Target Start/End: Complemental strand, 15825313 - 15825215
Alignment:
Q  131 cacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 229  Q
    ||||||||||||||| || ||||||||||| |    |||||| |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  15825313 cacacgccgcataactcgaagacggttatgaccaacgcgcgcctatacaagggtgaacttgcttcaccctcaaggtacacatgacttttcacaacactt 15825215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 19290651 - 19290546
Alignment:
Q  105 tacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaag 204  Q
    |||||||||||||| ||||| || |||| |||| |||||||||||||||||||||| | | |||||   ||||||||||||||||||||||||||| |||    
T  19290651 tacacgtgtccttt-ccgcttctaatcatacgctgcataacccggagacggttatgacccaagcgcatctatataagggtgaacttgcttcacccttaag 19290553  T
Q  205 gtacaca 211  Q
    |||||||    
T  19290552 gtacaca 19290546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 18772409 - 18772309
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    |||||||||||||||| |||||||| |||||| |    | | |  ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  18772409 atcacacgccgcataatccggagacagttatgaccaacgtgtgtctatataagggtgaacttgcttcaccctcaaggtgcacgtcacttttcacaacact 18772310  T
Q  229 t 229  Q
    |    
T  18772309 t 18772309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 19050410 - 19050469
Alignment:
Q  174 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    ||||||||||||||||| |||||| |||| |||||||| |||||||||||||||||||||    
T  19050410 tatataagggtgaacttacttcactctcagggtacacatcacttttcacaacacttctta 19050469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 10923070 - 10923195
Alignment:
Q  104 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctca 202  Q
    ||||||||||||| |||||   || |||||||||||||||| ||| |||| |||||| |||  | | ||  |||||||||||||||||||||||||||||    
T  10923070 ctacacgtgtcctcttccgtctctaatcacacgccgcataagccgaagactgttatgaccaaca-cacgtgtatataagggtgaacttgcttcaccctca 10923168  T
Q  203 aggtacacaacacttttcacaacactt 229  Q
    ||| ||||  ||||||||||| |||||    
T  10923169 aggcacacttcacttttcacagcactt 10923195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 18135992 - 18135928
Alignment:
Q  169 gcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    |||| ||||||||||||||||||||||||| || ||||| ||| ||||||| |||||||||||||    
T  18135992 gcgcctatataagggtgaacttgcttcaccttctaggtatacatcacttttgacaacacttctta 18135928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 3586523 - 3586424
Alignment:
Q  130 tcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 229  Q
    |||||||||||||||||  ||  |||||||| |    |||||| ||||||||||||||||||||||||||||||||||     |||||||||||||||||    
T  3586523 tcacacgccgcataaccaagaagcggttatgaccaacgcgcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactt 3586424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 36267614 - 36267581
Alignment:
Q  174 tatataagggtgaacttgcttcaccctcaaggta 207  Q
    ||||||||||||||||||||||||||||||||||    
T  36267614 tatataagggtgaacttgcttcaccctcaaggta 36267581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 3591084 - 3590877
Alignment:
Q  33 cacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatca 132  Q
    ||||||||| ||| |||| |||||  ||||| |||| | |||||||||||||||||| || |||||||| |||||||||||||  | |||||| | ||||    
T  3591084 cacactcaaaggaacacgacaactcgcctgcaccgtaccacactggagcacgcctccctgctgggatcacgctacacgtgtccactcccgctcataatca 3590985  T
Q  133 cacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctc-aaggtacacaacacttttcacaacacttct 231  Q
     |||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||    
T  3590984 tacgccgcataacccggagacggttatgccaagagtgcgcctatataagggtgaacttgcttcaccctcaaaggtacacaacacttttcacaactctcct 3590885  T
Q  232 tagacttt 239  Q
     |||||||    
T  3590884 aagacttt 3590877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 48637809 - 48637612
Alignment:
Q  20 cgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttt 119  Q
    ||||||||||| ||||| | |||||||||| ||||||| ||||| |||||  |||| |||||||||||||| || ||||||| ||||||| |||| ||      
T  48637809 cgccttaaggctacacatttaagggagcacaccaacttgcctgcaccgtgtcacaccggagcacgcctcctcgtcgggatcacgctacacttgtctttcc 48637710  T
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactt 217  Q
      |||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  48637709 atgctcctaatcacacgccgcataacacggagacggttatgccacgagcccgcctatataagggtgaacttgtttcaccctcaaggtacacaacactt 48637612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 229
Target Start/End: Original strand, 21098680 - 21098876
Alignment:
Q  33 cacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatca 132  Q
    ||||||||| ||||||||| |||   | || ||||||| ||||||||| |||||||| ||   |||| |||||||||||||||  ||   ||||| ||||    
T  21098680 cacactcaaaggagcacgctaacccgcttgtgccgtgccacactggagtacgcctccctgccaggattaggctacacgtgtccgctttaactcctaatca 21098779  T
Q  133 cacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 229  Q
     || ||||||||| | ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21098780 tacaccgcataactcagagacggttatgccaagagcgcacctatataagggtgaacttgcttcaccctcaaggtacacaacacttttcataacactt 21098876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 25408346 - 25408136
Alignment:
Q  40 aagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccg 139  Q
    |||||||||||||| ||| ||||| |||||| |||  |||||||||||||| |   |||||| ||||||| |||||||  ||||| || ||||||||||     
T  25408346 aagggagcacgccagcttgcctgcaccgtgccacagaggagcacgcctcctcgcaaggatcatgctacacatgtccttccccgcttctaatcacacgcct 25408247  T
Q  140 cataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagacttt 239  Q
     ||||||||||||| ||||||     | | ||| |||  ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||  |    
T  25408246 tataacccggagacagttatgaacaaaacacgcctatgaaagggtgaacttgcttcaccctcaagggacacatcacttttcacaacacttcttacacact 25408147  T
Q  240 ctctttcagtt 250  Q
    |||||||||||    
T  25408146 ctctttcagtt 25408136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 23728790 - 23728854
Alignment:
Q  169 gcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    |||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  23728790 gcgcctatataagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttctta 23728854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 4601398 - 4601517
Alignment:
Q  110 gtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtaca 209  Q
    |||||||  ||||| ||| |||||||| |||||||||||||||||| |||| |    |||||| |||||||||||||||||||||||||||||||| |||    
T  4601398 gtgtcctactccgcacctaatcacacggcgcataacccggagacggctatgaccaatgcgcgcgtatataagggtgaacttgcttcaccctcaagggaca 4601497  T
Q  210 caacacttttcacaacactt 229  Q
    || ||  ||||||| |||||    
T  4601498 catcaaatttcacagcactt 4601517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 14254972 - 14255060
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactt 217  Q
    |||| ||||||||||||| |||||  |||||| |   |||| || |||||||||||||||||| |||||||||||||||||||||||||    
T  14254972 atcatacgccgcataacctggagaaagttatgaccaaagcgtgcctatataagggtgaacttgtttcaccctcaaggtacacaacactt 14255060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 21682504 - 21682624
Alignment:
Q  113 tccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaa 212  Q
    |||||| || ||||| ||||||||| ||||||||| |||||  |||||      || ||| |||||||||||||| |||| ||||||||||||||||||     
T  21682504 tcctttccccctcctaatcacacgcagcataacccagagactattatgatcaacgcacgcctatataagggtgaatttgcgtcaccctcaaggtacacat 21682603  T
Q  213 cacttttcacaacacttctta 233  Q
     ||||||||||| | ||||||    
T  21682604 tacttttcacaatatttctta 21682624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 12177540 - 12177447
Alignment:
Q  136 gccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 229  Q
    |||||||||| ||||||| ||||||||    |||| | ||||||||| ||||||||||||  |||||||||| |   |||||||||||||||||    
T  12177540 gccgcataactcggagacagttatgcccaatgcgcacctatataaggttgaacttgcttcctcctcaaggtataattcacttttcacaacactt 12177447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 26977890 - 26977823
Alignment:
Q  140 cataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggta 207  Q
    |||||||| ||||||||||| ||    |||||| ||||||||||| || |||||||||||||||||||    
T  26977890 cataacccagagacggttattcccatcgcgcgcctatataagggtcaaattgcttcaccctcaaggta 26977823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 41064 - 40835
Alignment:
Q  22 ccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttcc 121  Q
    ||||||||| |||||||||||||||||||||||||| ||||| ||||||  |||  ||||||||||||| |  ||||||| ||||||| |||| ||  ||    
T  41064 ccttaaggctacacactcaagggagcacgccaactttcctgcaccgtgccgcacaagagcacgcctcctcgcagggatcacgctacacatgtcgttcccc 40965  T
Q  122 gctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttca 221  Q
    | || | |||||| ||||||||||||||||||||||||| |  | || ||| |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  40964 gttcttaatcacatgccgcataacccggagacggttatgaccagcgcacgcctataaaagggtgaacttgcttcaccctcaaggtacacatcacttttca 40865  T
Q  222 caacacttcttagactttctctttcagttc 251  Q
     |||||||| || ||| |||||||||||||    
T  40864 taacacttcctacactctctctttcagttc 40835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 20118798 - 20119029
Alignment:
Q  20 cgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttt 119  Q
    ||||||||||| ||||||| || ||||||||||||| | ||||| ||  || ||||  ||||||||||| |||| ||||||| ||||||  ||||||||     
T  20118798 cgccttaaggctacacacttaaaggagcacgccaacatgcctgcaccaagccacaccagagcacgcctcattgtcgggatcacgctacatatgtcctttc 20118897  T
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactttt 219  Q
    |||||||| |||| |||||| ||||||  |||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||| |||||     
T  20118898 ccgctcctaatcatacgccgaataacctagagacggttatgccataagcgcgcctatataagggtgaacttgcttcaccctcaaggtacacaatactttc 20118997  T
Q  220 cacaacacttcttagactttctctttcagttc 251  Q
    ||||| | |||| | |||||| || |||||||    
T  20118998 cacaatatttctaacactttcactctcagttc 20119029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 20122601 - 20122821
Alignment:
Q  21 gccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttc 120  Q
    |||||||||| || ||||||| | |||  |||||| | ||| | |||||| ||||  ||||||||| | |||| |||||||  ||||| ||||||||  |    
T  20122601 gccttaaggctacgcactcaaagtagcgtgccaacatgcctccaccgtgccacaccagagcacgccccattgtcgggatcacactacatgtgtccttccc 20122700  T
Q  121 cgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttc 220  Q
     |||| | |||| |||||||||||||||||||||||||| |||  ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |    
T  20122701 ggctcttaatcatacgccgcataacccggagacggttattccataagcgcgcctatataagggtgaactttcttcaccctcaaggtacacaacactttcc 20122800  T
Q  221 acaacacttcttagactttct 241  Q
    |||| ||||| || |||||||    
T  20122801 acaaaacttcatacactttct 20122821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 17396968 - 17396796
Alignment:
Q  45 agcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataa 144  Q
    |||| ||||||| |||||| |||||| ||||   ||||||||||||||  |||||||  ||||| ||||||||  |||||||| |||| |||||||||||    
T  17396968 agcatgccaactcacctgcaccgtgccacaccaaagcacgcctccttgccgggatcacactacatgtgtccttccccgctcctaatcatacgccgcataa 17396869  T
Q  145 cccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactt 217  Q
    |||| | | ||||| |||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  17396868 cccgaaaatggttacgccacgagtgcgtctatataagggtgaacatgcttcaccctcaaggtacacaacactt 17396796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 14860029 - 14860133
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    |||| ||||| ||||||| ||||||||||||| |   ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14860029 atcatacgcctcataacctggagacggttatgacttaagcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacact 14860128  T
Q  229 tctta 233  Q
    |||||    
T  14860129 tctta 14860133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 12731491 - 12731595
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    |||||||||||||||||||| |||| |||||| |  | || | | ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  12731491 atcacacgccgcataacccgaagacagttatgaccagcgcacacatatataagggtgaacttgcttcaccctcaaggttcacatcacttttcacaacact 12731590  T
Q  229 tctta 233  Q
    |||||    
T  12731591 tctta 12731595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 25496122 - 25495995
Alignment:
Q  106 acacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaagg 205  Q
    |||||||||||   ||| |||| ||||||||||||||||||||||||||||||||      | |||| ||||||||||||||||||||||||| | ||||    
T  25496122 acacgtgtcctacaccgttcctaatcacacgccgcataacccggagacggttatgatcaacgtgcgcctatataagggtgaacttgcttcacctttaagg 25496023  T
Q  206 tacacaacacttttcacaacacttctta 233  Q
    |||||| |||||||  |||| |||||||    
T  25496022 tacacatcacttttttcaactcttctta 25495995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 12516371 - 12516246
Alignment:
Q  104 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctca 202  Q
    |||||||||||||  ||||  ||| |||||| | |||||||  |||||||||||||| ||| | || | | ||||||| |||||||||||||||||||||    
T  12516371 ctacacgtgtcctgctccgtccctaatcacatgtcgcataaggcggagacggttatggccaag-gcacacctatataaaggtgaacttgcttcaccctca 12516273  T
Q  203 aggtacacaacacttttcacaacactt 229  Q
    ||||||| | |||||||||||||||||    
T  12516272 aggtacatatcacttttcacaacactt 12516246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 12108580 - 12108500
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtaca 209  Q
    |||||| |||||||||||||||| | |||||| |    ||| || ||||||||||||||||||||||||||||||||||||    
T  12108580 atcacaagccgcataacccggaggccgttatgaccaacgcgtgcctatataagggtgaacttgcttcaccctcaaggtaca 12108500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 20622594 - 20622491
Alignment:
Q  104 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaa 203  Q
    |||||||||||||||  |||| || |||||||| | ||||||||  |||||||||||||     |  || ||||||||||||||||||||||||||||||    
T  20622594 ctacacgtgtcctttatcgcttctaatcacacgtcacataacccaaagacggttatgcccaacacatgcatatataagggtgaacttgcttcaccctcaa 20622495  T
Q  204 ggta 207  Q
    ||||    
T  20622494 ggta 20622491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 16704525 - 16704463
Alignment:
Q  167 gcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 229  Q
    |||||| ||||||||||||||||||||||||||||||||||     |||||||||||||||||    
T  16704525 gcgcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactt 16704463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 7835482 - 7835535
Alignment:
Q  107 cacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatg 160  Q
    ||||||||||  |||| ||||||||||||| |||||||||| ||||||||||||    
T  7835482 cacgtgtcctcctccgttcctgatcacacgtcgcataacccagagacggttatg 7835535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 1770987 - 1770886
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacga-gcgcgcttatataagggtgaacttgcttcaccctcaaggtaca-caacacttttcacaaca 226  Q
    |||| |||||||||||  ||||||||||||||| || | |||| | |||||||||| |||||||||||| ||||||||  ||  | ||||||||||||||    
T  1770987 atcatacgccgcataattcggagacggttatgc-acaacgcgcacctatataagggcgaacttgcttcatcctcaaggcgcatgatcacttttcacaaca 1770889  T
Q  227 ctt 229  Q
    |||    
T  1770888 ctt 1770886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 30607051 - 30606989
Alignment:
Q  167 gcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 229  Q
    |||||| ||||||||||||  ||| |||||||||||||||| |   |||||||||||||||||    
T  30607051 gcgcgcctatataagggtggccttacttcaccctcaaggtataattcacttttcacaacactt 30606989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 431285 - 431346
Alignment:
Q  168 cgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 229  Q
    ||||| |||||||||||| || |||||||||||||||| |||   ||||||||||| |||||    
T  431285 cgcgcctatataagggtggacatgcttcaccctcaagggacaattcacttttcacagcactt 431346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 215527 - 215312
Alignment:
Q  35 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 134  Q
    ||||||| ||||||||||| ||| | ||| ||||||  ||| | ||||| |||||| || ||||||    |||||||||||||  |||||||| ||||||    
T  215527 cactcaaaggagcacgccagcttgcgtgcaccgtgcctcacagaagcacacctcctcgtagggatcgccttacacgtgtccttccccgctcctaatcaca 215428  T
Q  135 cgccgcataacccggagacggttatgc-cacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    ||||||||||||||||||| ||||||  ||  | | ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  215427 cgccgcataacccggagacagttatgatcaaca-cacggctatataaggatgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 215329  T
Q  234 gactttctctttcagtt 250  Q
     ||  ||||||||||||    
T  215328 cacactctctttcagtt 215312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 42516 - 42309
Alignment:
Q  22 ccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttcc 121  Q
    |||||||||  ||||||||| ||| ||||| ||||  |||| | ||||| ||||||||| |||||||| ||    ||| | |||||||||||||  |       
T  42516 ccttaaggcttcacactcaaaggaacacgctaactcgcctgtgtcgtgccacactggagtacgcctccctgccatgattacgctacacgtgtccgctcta 42417  T
Q  122 gctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttca 221  Q
     ||||| |||| || ||||||||| | ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42416 actcctaatcatacaccgcataactcagagacggttatgccaagagcgggcctatataagggtgaacttgcttcaccctcaaggtacacaacacttttca 42317  T
Q  222 caacactt 229  Q
    ||||||||    
T  42316 caacactt 42309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 18799948 - 18799844
Alignment:
Q  121 cgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttc 220  Q
    ||||||| |||||||||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||    
T  18799948 cgctcctaatcacacgccacataacccagagacggttatgcctcgagcgcgcctatataagggtgaacttgcttcatcatcaaggtacacaacacttttc 18799849  T
Q  221 acaac 225  Q
    |||||    
T  18799848 acaac 18799844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 33 - 225
Target Start/End: Complemental strand, 18804174 - 18803982
Alignment:
Q  33 cacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatca 132  Q
    ||||||||||||||||||||||||  || | ||||||| ||||||||||||||||||||||  |||||| | |||| ||||||  | |||||||| ||||    
T  18804174 cacactcaagggagcacgccaactcgcccgtgccgtgccacactggagcacgcctccttgtcaggatcacgttacatgtgtccactcccgctcctaatca 18804075  T
Q  133 cacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaac 225  Q
    |||| || ||||| | |||| |  | |||||| | | ||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  18804074 cacgtcgtataactcagagatgaatctgccacaaacacgcctatatacgggtgaaattgcttcaccctcaaggtacacaacaattttcacaac 18803982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 21213438 - 21213306
Alignment:
Q  95 gggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgctt 194  Q
    ||||||| |||||||||||||  |||||||||| |||   ||||| |||||| |||||||||||| ||| |||||||| |||||||||||||||||||||    
T  21213438 gggatcacgctacacgtgtccacttccgctcctaatcgttcgccgtataaccaggagacggttataccaagagcgcgcctatataagggtgaacttgctt 21213339  T
Q  195 caccctcaaggtacacaacacttttcacaacac 227  Q
    |||||||||| ||||||||||||||||| ||||    
T  21213338 caccctcaagctacacaacacttttcactacac 21213306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 25679142 - 25679272
Alignment:
Q  95 gggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgctt 194  Q
    ||||||| |||| ||||||||  | | |||||| |||| || |||||||||||| |||||||||||||| |||||| | |||||||||||||||||||||    
T  25679142 gggatcacgctaaacgtgtccactcctgctcctaatcatactccgcataacccgaagacggttatgccaagagcgcacctatataagggtgaacttgctt 25679241  T
Q  195 caccctcaaggtacacaacacttttcacaac 225  Q
    |||||||||| || |||||||||||||||||    
T  25679242 caccctcaagctagacaacacttttcacaac 25679272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 26347953 - 26348109
Alignment:
Q  61 tgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatg 160  Q
    |||| ||||| |||| |||||||||||||| | |||||||| || |||||||| |||  ||||| || |||||||| ||||||||||||||||| |||||    
T  26347953 tgcgtcgtgccacacaggagcacgcctcctcgctgggatcacgcaacacgtgttcttccccgcttctaatcacacgtcgcataacccggagacgtttatg 26348052  T
Q  161 ccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactt 217  Q
      |     |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26348053 gaaaacatgcgcctatataagggtgaacttgcttcaccctcaaggtacacaacactt 26348109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 24546597 - 24546399
Alignment:
Q  35 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 134  Q
    |||| |||||||||||||||||| | ||| |||||| |||| ||||| | |||||  |   ||||||  ||||||||||| |  ||||  ||| ||||||    
T  24546597 cacttaagggagcacgccaacttgcgtgcaccgtgccacacaggagcgcacctccgcgcaaggatcaccctacacgtgtcttgctccgtccctaatcaca 24546498  T
Q  135 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaac-ttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    |||||||||||||||||||||||||| |    |||||| ||||||||||||||| |||||||||| |||||||||||| ||| |||||||||||||||||    
T  24546497 cgccgcataacccggagacggttatggctaacgcgcgcctatataagggtgaactttgcttcaccttcaaggtacacatcac-tttcacaacacttctta 24546399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 25828893 - 25829022
Alignment:
Q  104 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttat-gccacgagcgcgcttatataagggtgaacttgcttcaccctca 202  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||| ||||  | |||  ||||||| ||||||||||| ||||||||||    
T  25828893 ctacacgtgtcctattccgcccctaatcacacgccgcataacccggagacggctatggccaaca-cgcttttatatacgggtgaacttgtttcaccctca 25828991  T
Q  203 aggtacacaacacttttcacaacacttctta 233  Q
    ||| ||||| |||||||||||| ||||||||    
T  25828992 agggacacatcacttttcacaatacttctta 25829022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 233
Target Start/End: Complemental strand, 22865947 - 22865818
Alignment:
Q  104 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaa 203  Q
    ||||||||||| |  ||||  ||| |||||| | ||||||| ||||| ||||||||| |    || ||| ||||||||||||||||||||||||||||||    
T  22865947 ctacacgtgtcatgctccgtccctaatcacaagtcgcataatccggaaacggttatggccaacgcacgcctatataagggtgaacttgcttcaccctcaa 22865848  T
Q  204 ggtacacaacacttttcacaacacttctta 233  Q
    |||||||| |||||||||||||| ||||||    
T  22865847 ggtacacatcacttttcacaacatttctta 22865818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 24647412 - 24647327
Alignment:
Q  166 agcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttc 251  Q
    ||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||  ||| |||||||||    
T  24647412 agcgcgcctatataagggtgaacttgcttcacccttaaggtatacatcacttttcacaacacttcttacacactctttttcagttc 24647327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 25537566 - 25537465
Alignment:
Q  129 atcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacac 227  Q
    |||||||| | ||||||| |||||||||| || ||| | |||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  25537566 atcacacgtcacataacctggagacggttttggccaag-gcgcgcctatataagggtgaactttcttcaccctcaaggtatacatcacttttcacaacac 25537468  T
Q  228 ttc 230  Q
    |||    
T  25537467 ttc 25537465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 230
Target Start/End: Original strand, 31202280 - 31202407
Alignment:
Q  104 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaa 203  Q
    ||||||||||| |  ||| | ||| ||||||||||||||||||  |||||||||||| |    | |||| ||||||||||||||||||||||||||||||    
T  31202280 ctacacgtgtcttcctccacccctaatcacacgccgcataacctagagacggttatgaccaacgtgcgcctatataagggtgaacttgcttcaccctcaa 31202379  T
Q  204 ggtaca-caacacttttcacaacacttc 230  Q
    ||||||  | |||||| |||||||||||    
T  31202380 ggtacattatcactttccacaacacttc 31202407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 26994574 - 26994614
Alignment:
Q  167 gcgcgcttatataagggtgaacttgcttcaccctcaaggta 207  Q
    |||||| ||||||||||||| |||||||||||| |||||||    
T  26994574 gcgcgcctatataagggtgaccttgcttcacccccaaggta 26994614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 4784 - 4970
Alignment:
Q  38 tcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttg---ggatcaggctacacgtgtccttttccgctcctgatcaca 134  Q
    |||| ||||||||||||| | |||||||||||| ||| |||||||| |||||||||||   || ||| |||||||||||||  | ||||| || ||||||    
T  4784 tcaaaggagcacgccaacatgcctgcgccgtgccacattggagcacacctccttgttgccgggttcacgctacacgtgtccactcccgcttctaatcaca 4883  T
Q  135 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttca 221  Q
     |||||||||  |||||||  ||||||||| ||||  | |||||||| ||||| |||||||| ||||| ||||||||||||||||||    
T  4884 tgccgcataaatcggagacaattatgccacaagcgaacctatataagagtgaatttgcttcatcctcatggtacacaacacttttca 4970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 6330 - 6516
Alignment:
Q  38 tcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttg---ggatcaggctacacgtgtccttttccgctcctgatcaca 134  Q
    |||| ||||||||||||| | |||||||||||| ||| |||||||| |||||||||||   || ||| |||||||||||||  | ||||| || ||||||    
T  6330 tcaaaggagcacgccaacatgcctgcgccgtgccacattggagcacacctccttgttgccgggttcacgctacacgtgtccactcccgcttctaatcaca 6429  T
Q  135 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttca 221  Q
     |||||||||  |||||||  ||||||||| ||||  | |||||||| ||||| |||||||| ||||| ||||||||||||||||||    
T  6430 tgccgcataaatcggagacaattatgccacaagcgaacctatataagagtgaatttgcttcatcctcatggtacacaacacttttca 6516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 225
Target Start/End: Original strand, 53152 - 53299
Alignment:
Q  78 gagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttata 177  Q
    |||||| ||||||||  | ||||| ||||||  |||||  | |||||||| |||| || ||||||||||  |||||||||||||||||||||||| ||||    
T  53152 gagcacacctccttgccgagatcacgctacatttgtccactcccgctcctaatcaaacaccgcataacctagagacggttatgccacgagcgcgcctata 53251  T
Q  178 taagggtgaacttgcttcaccctcaaggtacacaacacttttcacaac 225  Q
    ||||||||||||||||||| ||||  |||||||||||||||| |||||    
T  53252 taagggtgaacttgcttcaacctctgggtacacaacacttttaacaac 53299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 4273 - 4371
Alignment:
Q  19 tcgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctt 117  Q
    |||||||||||| |||||||||||||||||||||||||||||| |  ||||| |||| |||||||||||||||| |||||||| ||||||||| |||||    
T  4273 tcgccttaaggctacacactcaagggagcacgccaacttacctacatcgtgccacacaggagcacgcctccttgctgggatcacgctacacgtttcctt 4371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 4399 - 4475
Alignment:
Q  174 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagtt 250  Q
    |||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||| ||| ||||||||||||    
T  4399 tatataagggtgaacttgcttcaccctcaaggtacacatcatttttcataacacttcttacactctctctttcagtt 4475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 6790 - 6894
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    |||||||||||||||||| ||||||||||||| |    | |||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  6790 atcacacgccgcataacctggagacggttatggccaacgtgcgcctatacaagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacact 6889  T
Q  229 tctta 233  Q
    |||||    
T  6890 tctta 6894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 21439 - 21669
Alignment:
Q  20 cgccttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtc-cttt 118  Q
    ||||||||||| ||||||| |||||||||||||||||| | |||  ||||| ||||  ||||||||||||| |  ||||||| |||||||||||| |       
T  21439 cgccttaaggctacacacttaagggagcacgccaacttgcatgcatcgtgccacacatgagcacgcctcctcgcagggatcacgctacacgtgtcacgca 21538  T
Q  119 tccgctcctgatcacacgccgcataacccggagacggttatgc-cacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactt 217  Q
     | || ||| ||||||||| | ||  | | ||||||||||| | || | |||||  ||| |||||||||| ||||||||||||||||||||||| |||||    
T  21539 actgc-cctaatcacacgctggatctcacagagacggttatactcaag-gcgcgtctatgtaagggtgaatttgcttcaccctcaaggtacacatcactt 21636  T
Q  218 ttcacaacacttcttagactttctctttcagtt 250  Q
    | |||||||||||||| ||  ||||||||||||    
T  21637 tccacaacacttcttaaacactctctttcagtt 21669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 10890 - 10967
Alignment:
Q  174 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttc 251  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||  |||||||||||||    
T  10890 tatataaaggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactctctttcagttc 10967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 233
Target Start/End: Complemental strand, 23072 - 22943
Alignment:
Q  104 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaa 203  Q
    |||||| ||||||  ||||  ||| ||||||| |||||||||| ||||| ||||||  |    |||| | || |||||||||||||||||||||||||||    
T  23072 ctacacatgtcctgctccgtccctaatcacacaccgcataacctggagagggttatcaccaacgcgcacctacataagggtgaacttgcttcaccctcaa 22973  T
Q  204 ggtacacaacacttttcacaacacttctta 233  Q
    |||||||  |||||||||||||||||||||    
T  22972 ggtacacgtcacttttcacaacacttctta 22943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 5199 - 5095
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    |||||||||||||||| ||| |||||||||||    | || | | ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  5199 atcacacgccgcataagccgaagacggttatgatcagcgcacacctatataagggtgaacttgcttcaccctcaaggttcacgtcacttttcacaacact 5100  T
Q  229 tctta 233  Q
    |||||    
T  5099 tctta 5095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 379837 - 379773
Alignment:
Q  169 gcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 233  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  379837 gcgcctatatacgggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttctta 379773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 120978 - 121041
Alignment:
Q  166 agcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 229  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  120978 agcgcgcctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacactt 121041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 11673 - 11574
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 228  Q
    |||||||||||||||||||| |||| |||||| |  | || | | |||||||||||||||||| |||||||||||||| |||| ||||||||||||||||    
T  11673 atcacacgccgcataacccgaagacagttatgaccagcgcacacatatataagggtgaacttggttcaccctcaaggt-cacatcacttttcacaacact 11575  T

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Target: scaffold0294 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 172 - 277
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtaca-caacacttttcacaacac 227  Q
    ||||||| | ||||||||||||||| |||||| |    |||||| || |||||||||||||||||||||||||||||||||    |||||||||||||||    
T  172 atcacacactgcataacccggagacagttatgaccaacgcgcgcctagataagggtgaacttgcttcaccctcaaggtacattctcacttttcacaacac 271  T
Q  228 ttctta 233  Q
    ||||||    
T  272 ttctta 277  T

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Target: scaffold0518 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 9144 - 9031
Alignment:
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactttt 219  Q
    |||||||| |||| | | |||||||||  |||||||||||| |    ||| || ||||||||||||||| | || |||||||||||||||||  | ||||    
T  9144 ccgctcctaatcatatgtcgcataacctagagacggttatgaccaacgcgggcctatataagggtgaaccttctccaccctcaaggtacacataattttt 9045  T
Q  220 cacaacacttctta 233  Q
    ||||||||||||||    
T  9044 cacaacacttctta 9031  T

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Target: scaffold0140 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 6468 - 6359
Alignment:
Q  120 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactttt 219  Q
    |||||||| ||||||| || | |||||||||||||||||||      | |||| ||||||||| |||||||||||||| ||||||||||    |||||||    
T  6468 ccgctcctaatcacacaccacgtaacccggagacggttatgttcaacgtgcgcctatataaggatgaacttgcttcacgctcaaggtacgactcactttt 6369  T
Q  220 cacaacactt 229  Q
    ||||||||||    
T  6368 cacaacactt 6359  T

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Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 15405 - 15460
Alignment:
Q  174 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 229  Q
    ||||||||||||||||||||||||||||||||||     |||||||||||||||||    
T  15405 tatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactt 15460  T

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Target: scaffold0360 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 14038 - 14005
Alignment:
Q  174 tatataagggtgaacttgcttcaccctcaaggta 207  Q
    ||||||||||||| ||||||||||||||||||||    
T  14038 tatataagggtgatcttgcttcaccctcaaggta 14005  T

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Target: scaffold0263 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 20427 - 20524
Alignment:
Q  129 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaaca 226  Q
    |||||||||  |||||| ||||||||| |||| |    |||||| |||||| ||||||| ||  ||||||| ||||||||||| ||||||||| ||||    
T  20427 atcacacgctacataactcggagacggctatgaccaacgcgcgcctatatatgggtgaatttatttcacccacaaggtacacatcacttttcataaca 20524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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