View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0631_low_4 (Length: 607)
Name: NF0631_low_4
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0631_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 312 - 578
Target Start/End: Complemental strand, 35949273 - 35949007
Alignment:
| Q |
312 |
aataataaaagtttccaattatttatgtatataccacccgctgtatttgttgtccttcggattcttttttagcatgaaaagctttagaagtagacgtttt |
411 |
Q |
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| T |
35949273 |
aataataaaagtttccaattatctatgtatataccacccactgtatttgttgtccttcggattcttttttagcatgaaaagctttagaagtggacgtttt |
35949174 |
T |
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| Q |
412 |
gcttacgaattgtaaagctaaacatgtgtttctcttagctagagcttcatcaataaatttaatcacatgaattctttaggatgtaagcagctgttcctgt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35949173 |
gcttacgaattgtaaagctaaacatgtgtttctcttagctagagcttcctcaataaatttaatcacatgaattctttaggatgtaagcagctgttcctgt |
35949074 |
T |
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| Q |
512 |
ttgagagcaagaaaggacaaaagcaagaaagtagctttgaaaccatgaaaatccagtcaaaccagac |
578 |
Q |
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| T |
35949073 |
ttgagagcaagaaaggacaaaagcaagaaagtagctttgaaaccatgaaaatccagtcaaaccagac |
35949007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 35949564 - 35949317
Alignment:
| Q |
19 |
gggagataacttctttctcatcttatatatcataggttattttcatacaattattgaaatacgtatatcataagattagctaaaacgagtaaataatatt |
118 |
Q |
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|||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| |
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| T |
35949564 |
gggagagaacttctttctcaacatatatatcataggttattttcatacaattattgaaatacttatatcatcagattagcttaaacgagtaaataatatt |
35949465 |
T |
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| Q |
119 |
tttcaaacacaaataatgtgttgtacaaacttctctcaaacggaaagcaacatattagctat--acatcattacaannnnnnnnncttcatatagtgatc |
216 |
Q |
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| T |
35949464 |
tttcaaacacaaataatgtgttgtacaaact--tctcaaaaggaaagcaacatattagctatacacatcattacaa-ttttttttcttcatatagtgata |
35949368 |
T |
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| Q |
217 |
gaaaaaatctgtaggtaaaggtaaacaaaccgtgggtgtatttgataaaac |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35949367 |
gaaaaaatctgtaggtaaaggtaaacaaaccgtgggtgtatgtgataaaac |
35949317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 35964092 - 35964043
Alignment:
| Q |
364 |
tccttcggattcttttttagcatgaaaagctttagaagtagacgttttgc |
413 |
Q |
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|||||| |||||||||||||| || ||||||||||||||||||| ||||| |
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| T |
35964092 |
tccttctgattcttttttagcttggaaagctttagaagtagacgctttgc |
35964043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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