View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0631_low_40 (Length: 219)

Name: NF0631_low_40
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0631_low_40
NF0631_low_40
[»] chr4 (16 HSPs)
chr4 (1-124)||(55694213-55694337)
chr4 (122-215)||(3102537-3102630)
chr4 (126-215)||(13690216-13690305)
chr4 (122-215)||(40533960-40534053)
chr4 (125-203)||(3102726-3102804)
chr4 (125-215)||(9231580-9231670)
chr4 (124-202)||(18936864-18936942)
chr4 (125-202)||(40534150-40534227)
chr4 (124-191)||(11147013-11147080)
chr4 (122-202)||(18381496-18381576)
chr4 (123-196)||(5121000-5121073)
chr4 (122-202)||(37177813-37177893)
chr4 (123-202)||(18936674-18936752)
chr4 (122-190)||(37177621-37177688)
chr4 (144-187)||(9231782-9231825)
chr4 (123-203)||(11147211-11147290)
[»] chr5 (26 HSPs)
chr5 (125-215)||(42630711-42630801)
chr5 (125-215)||(8323707-8323797)
chr5 (124-215)||(130253-130344)
chr5 (125-215)||(26534506-26534596)
chr5 (122-202)||(26534685-26534765)
chr5 (123-202)||(5146690-5146769)
chr5 (121-202)||(35454637-35454717)
chr5 (127-202)||(8323895-8323970)
chr5 (123-202)||(42630894-42630973)
chr5 (125-202)||(791592-791669)
chr5 (125-202)||(33377835-33377912)
chr5 (123-191)||(13823148-13823215)
chr5 (125-204)||(5146504-5146582)
chr5 (125-204)||(35454451-35454529)
chr5 (125-215)||(791768-791867)
chr5 (125-202)||(130435-130512)
chr5 (121-202)||(8489119-8489200)
chr5 (123-191)||(14069859-14069926)
chr5 (125-197)||(14388512-14388583)
chr5 (119-202)||(6518390-6518472)
chr5 (125-202)||(40881792-40881867)
chr5 (125-202)||(228717-228794)
chr5 (125-186)||(6518203-6518264)
chr5 (125-202)||(13823335-13823412)
chr5 (125-202)||(19898941-19899018)
chr5 (128-196)||(19897228-19897295)
[»] chr1 (24 HSPs)
chr1 (122-215)||(10227886-10227979)
chr1 (129-207)||(19059378-19059456)
chr1 (120-202)||(10227707-10227789)
chr1 (124-202)||(23346418-23346496)
chr1 (127-215)||(26551992-26552080)
chr1 (125-202)||(26552179-26552256)
chr1 (123-203)||(28217528-28217607)
chr1 (123-202)||(28217706-28217785)
chr1 (125-204)||(50893148-50893226)
chr1 (125-203)||(4156892-4156969)
chr1 (125-203)||(48871247-48871324)
chr1 (118-203)||(7062183-7062267)
chr1 (125-202)||(48871424-48871501)
chr1 (125-197)||(48752586-48752657)
chr1 (134-203)||(23346607-23346675)
chr1 (125-202)||(50892963-50893040)
chr1 (125-196)||(42180571-42180641)
chr1 (126-202)||(50904992-50905070)
chr1 (125-202)||(41833874-41833951)
chr1 (134-202)||(19059565-19059633)
chr1 (126-202)||(39669245-39669321)
chr1 (125-196)||(41834069-41834139)
chr1 (156-202)||(7062038-7062084)
chr1 (156-202)||(42180759-42180805)
[»] scaffold0214 (2 HSPs)
scaffold0214 (125-215)||(11801-11891)
scaffold0214 (129-202)||(11630-11703)
[»] chr2 (22 HSPs)
chr2 (125-215)||(16115218-16115308)
chr2 (125-215)||(31860079-31860169)
chr2 (125-215)||(42028752-42028842)
chr2 (125-206)||(2059490-2059571)
chr2 (122-215)||(7317632-7317725)
chr2 (123-191)||(7317833-7317901)
chr2 (123-202)||(15332849-15332928)
chr2 (118-191)||(36059285-36059358)
chr2 (122-202)||(13280022-13280102)
chr2 (122-202)||(31860272-31860352)
chr2 (118-202)||(42028571-42028655)
chr2 (125-186)||(13279840-13279901)
chr2 (126-204)||(3671822-3671899)
chr2 (125-202)||(31470587-31470663)
chr2 (124-202)||(2059671-2059749)
chr2 (125-202)||(16115046-16115123)
chr2 (125-191)||(38085967-38086032)
chr2 (125-182)||(15330449-15330505)
chr2 (119-204)||(31470763-31470847)
chr2 (125-202)||(38086154-38086231)
chr2 (125-202)||(3672010-3672087)
chr2 (124-153)||(36059247-36059276)
[»] chr8 (11 HSPs)
chr8 (125-215)||(37994708-37994798)
chr8 (125-202)||(37994895-37994972)
chr8 (122-215)||(44036811-44036904)
chr8 (125-203)||(2814430-2814508)
chr8 (119-191)||(41539969-41540040)
chr8 (125-202)||(14193512-14193588)
chr8 (123-202)||(397192-397271)
chr8 (124-202)||(41539769-41539847)
chr8 (123-191)||(2814241-2814308)
chr8 (125-191)||(397007-397072)
chr8 (123-202)||(14193322-14193400)
[»] chr3 (13 HSPs)
chr3 (125-215)||(33219072-33219162)
chr3 (124-215)||(33214613-33214704)
chr3 (122-215)||(10598805-10598898)
chr3 (124-202)||(33214442-33214520)
chr3 (125-202)||(27073095-27073172)
chr3 (122-215)||(36274299-36274392)
chr3 (124-186)||(27072912-27072974)
chr3 (125-202)||(36635425-36635502)
chr3 (122-202)||(19580497-19580577)
chr3 (125-202)||(36274120-36274196)
chr3 (128-191)||(36635241-36635303)
chr3 (125-187)||(10599000-10599062)
chr3 (125-202)||(11651000-11651077)
[»] chr6 (6 HSPs)
chr6 (124-215)||(33022163-33022254)
chr6 (126-202)||(33022355-33022431)
chr6 (121-203)||(21389208-21389289)
chr6 (126-203)||(7789856-7789933)
chr6 (125-202)||(21389021-21389098)
chr6 (136-203)||(7789678-7789744)
[»] scaffold0135 (2 HSPs)
scaffold0135 (125-215)||(37446-37536)
scaffold0135 (144-187)||(37648-37691)
[»] chr7 (10 HSPs)
chr7 (125-215)||(19804797-19804887)
chr7 (125-202)||(40521203-40521280)
chr7 (125-204)||(28948991-28949069)
chr7 (125-202)||(7298635-7298712)
chr7 (120-191)||(7298835-7298905)
chr7 (121-191)||(19805612-19805682)
chr7 (123-196)||(40521014-40521086)
chr7 (125-203)||(16979604-16979681)
chr7 (128-197)||(46567960-46568028)
chr7 (156-202)||(46568145-46568191)
[»] scaffold0140 (1 HSPs)
scaffold0140 (119-191)||(15841-15913)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 55694337 - 55694213
Alignment:
Q  1 acctcatgtcactgacagaaattaaagagatcaatgtacccagaataatattagaaggatcaccataacaggttgt-aaatgatttttattttaattact 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||    
T  55694337 acctcatgtcactgacagaaattaaagagatcaatgtacccaaaataatattacaaggatcaacataacaggttgtaaaatgatttttattttaattact 55694238  T
Q  100 ttggtttacactttttcttaaaaaa 124  Q
    |||||||||||||||||||||||||    
T  55694237 ttggtttacactttttcttaaaaaa 55694213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 3102537 - 3102630
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || || ||||||||||||||||||||    
T  3102537 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaatg 3102630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 13690216 - 13690305
Alignment:
Q  126 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || || ||||||||||||||||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaatg 13690305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 40533960 - 40534053
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||| || || ||||||||||||||| ||||    
T  40533960 aaagagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccatgaatg 40534053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 3102804 - 3102726
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 203  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||||||    
T  3102804 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttt 3102726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 9231580 - 9231670
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||||||||||||||||||||||  ||| ||||||||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  9231580 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 9231670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 18936942 - 18936864
Alignment:
Q  124 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  18936942 agagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 18936864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 40534227 - 40534150
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 40534150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 11147013 - 11147080
Alignment:
Q  124 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||    
T  11147013 agagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacac 11147080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 18381576 - 18381496
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||||||||||||  | |||| ||||||| ||| ||| ||||||||||||| ||||||||||    
T  18381576 aaagagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgtttt 18381496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 5121073 - 5121000
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 196  Q
    ||||||||||||||||||||||| |||||||  |||||| ||||||||||| ||| ||||||||||||| ||||    
T  5121073 aagagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcat 5121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 37177893 - 37177813
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||| ||||||||||| |||  |||||| ||||||||||| ||| |||||||||| || ||||||||||    
T  37177893 aaagagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgtttt 37177813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 18936674 - 18936752
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||| |||||||| ||| ||||||| ||||||||||| ||| |||||||||| || ||||| ||||    
T  18936674 aagagaaattcttgtgtatgaacgaacataa-ctatcattcttacaaacaacaaattaaaacatgatacgtcattttttt 18936752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 37177621 - 37177688
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgaca 190  Q
    |||||||||||||| ||||||||||||   ||| |||||| ||||||||||||||| ||||| ||||||    
T  37177621 aaagagaaattcttctgtaggaacgaattcaat-tatcattcttacaaacaataaattaaaatatgaca 37177688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 9231825 - 9231782
Alignment:
Q  144 acgaacctaatctatcatccttacaaacaataaactaaaacatg 187  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||    
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 9231782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 11147290 - 11147211
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 203  Q
    |||| |||||||| ||||| |||||| |||| |||| || ||||||||||||||| ||||| ||||||  ||||| |||||    
T  11147290 aagaaaaattcttatgtagaaacgaatctaa-ctattattcttacaaacaataaattaaaatatgacatgtcatttttttt 11147211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 42630711 - 42630801
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttttccaccataaatg 42630801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 8323707 - 8323797
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || ||||||||||||||| ||||    
T  8323707 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttttccaccatgaatg 8323797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 130253 - 130344
Alignment:
Q  124 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||| ||| ||||||||||||| || ||||||||||||||||||||    
T  130253 agagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccataaatg 130344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 26534506 - 26534596
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 26534596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 26534765 - 26534685
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  26534765 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 26534685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 5146769 - 5146690
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  5146769 aagagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 5146690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 35454717 - 35454637
Alignment:
Q  121 aaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  35454717 aaaagaaaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 35454637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 8323970 - 8323895
Alignment:
Q  127 gaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||||| || |||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 8323895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 42630973 - 42630894
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||| || |||||||    
T  42630973 aagaaaaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgtttt 42630894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 791592 - 791669
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| || |||||||    
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 791669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 33377912 - 33377835
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||| |||||||||||||||||  |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  33377912 gagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 33377835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 13823148 - 13823215
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    ||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||    
T  13823148 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcgtataaacaataaactaaaacatgacac 13823215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 5146504 - 5146582
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 204  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| | ||| ||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacatgacacgttattttttttc 5146582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 35454451 - 35454529
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 204  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||| ||||||    
T  35454451 gagaaattcttgtgtatgaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcattttttttc 35454529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 791867 - 791768
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaa-----taaac----taaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||     |||||    ||||||||||||| ||||| |||||||||||||||||    
T  791867 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaacaaattaaaacatgacacgtcattatttttccaccataaatg 791768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 130512 - 130435
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||| |||||||| |||| || |||||||    
T  130512 gagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgtttt 130435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 8489119 - 8489200
Alignment:
Q  121 aaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||||| || ||||  |||||| ||||||||||| ||| ||||| ||||||| ||||||||||    
T  8489119 aaaagagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgtttt 8489200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 14069859 - 14069926
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||| |||||||||||||    
T  14069859 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttataaacaacaaattaaaacatgacac 14069926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 14388583 - 14388512
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcatt 197  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||| ||||||||||||| |||||    
T  14388583 gagaaattcttgtgtaggaacaaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcatt 14388512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 6518472 - 6518390
Alignment:
Q  119 aaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||| ||||| |||| || ||||| ||||    
T  6518472 aaaaaagagaaattcttgtgtagtaacgaacctaa-ctatcattcttacaaacaacaaattaaaatatgatacatcattttttt 6518390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 40881792 - 40881867
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||| ||||||||||||||||||||   || || ||||||||||||||| ||||||||||||| ||||||||||    
T  40881792 gagaaattgttgtgtaggaacgaacctaac--attattcttacaaacaataaattaaaacatgacacgtcattgtttt 40881867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 228717 - 228794
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||  |||||||||||||||||||  |||||| |||| |||||||||| ||||||||||||| | ||||||||    
T  228717 gagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgtttt 228794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 6518203 - 6518264
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacat 186  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||||||    
T  6518203 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 6518264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 13823412 - 13823335
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||||| |||  ||||||  ||||||| || ||| ||||||||||||| ||||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgtttt 13823335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 19899018 - 19898941
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||||||||||||  ||||||  ||| |||||| ||| ||||||||||||  ||||||||||    
T  19899018 gagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgtttt 19898941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 19897228 - 19897295
Alignment:
Q  128 aaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 196  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||    
T  19897228 aaattattgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcat 19897295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 10227979 - 10227886
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||    
T  10227979 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacatcattatttttccaccataaatg 10227886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 19059378 - 19059456
Alignment:
Q  129 aattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccac 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||||||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccac 19059456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 10227707 - 10227789
Alignment:
Q  120 aaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| || |||||||    
T  10227707 aaaatgagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 10227789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 23346418 - 23346496
Alignment:
Q  124 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| ||||| ||||    
T  23346418 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattttttt 23346496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 26551992 - 26552080
Alignment:
Q  127 gaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||| ||| ||| || ||||||||||||||| ||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttttccaccatgaatg 26552080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 26552256 - 26552179
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||| ||||||| || |||||||    
T  26552256 gagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 26552179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 28217528 - 28217607
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 203  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||| ||||| |||||    
T  28217528 aagagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttt 28217607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 28217785 - 28217706
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||| ||||||||||||||||||||  |||||| ||||||||||| |||  |||||||||||| ||||||||||    
T  28217785 aagagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgtttt 28217706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 50893226 - 50893148
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 204  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| ||| ||||||||||||| ||||| ||||||    
T  50893226 gagaaattcttgtgtaggaacgaacctaa-ctatcattattacaaacaacaaattaaaacatgacacatcattttttttc 50893148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 4156892 - 4156969
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 203  Q
    |||||||||||||||||||| |||||||| ||||||| |||||||| |||||| ||||||||||||| ||||| |||||    
T  4156892 gagaaattcttgtgtaggaaggaacctaa-ctatcattcttacaaataataaattaaaacatgacacgtcatttttttt 4156969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 48871247 - 48871324
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 203  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| || ||| ||||||||||||| ||||| |||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaataacaaattaaaacatgacacatcatttttttt 48871324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 7062267 - 7062183
Alignment:
Q  118 taaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 203  Q
    ||||||||||||||| |||||||||||||||||||| |||||||  |||||||||| ||| ||||| ||||||| ||||| |||||    
T  7062267 taaaaaagagaaatttttgtgtaggaacgaacctaa-ctatcatttttacaaacaacaaattaaaatatgacacgtcatttttttt 7062183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 48871501 - 48871424
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||||||  ||| ||||||||||    
T  48871501 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgtttt 48871424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 48752657 - 48752586
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcatt 197  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||| ||| ||||||||||||| |||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcatt 48752586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 23346675 - 23346607
Alignment:
Q  134 ttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 203  Q
    |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||  ||||| |||||    
T  23346675 ttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacatgacatgtcatttttttt 23346607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 50892963 - 50893040
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||| |||||||| ||||||| |||  |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  50892963 gagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 50893040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 42180571 - 42180641
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 196  Q
    ||||||||||||||||||||||||||||| ||| |||  |||||||||| ||| ||||||||||||| ||||    
T  42180571 gagaaattcttgtgtaggaacgaacctaa-ctagcattattacaaacaacaaattaaaacatgacacgtcat 42180641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 50904992 - 50905070
Alignment:
Q  126 agaaattcttgtgtaggaacgaaccta--atctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||||||||||  || ||||||  |||||||||| ||  ||||||||||||| ||||||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgtttt 50905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 41833874 - 41833951
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||| ||| |||||| ||||| |||||| |||||| |||| ||| ||||||||||||| ||||| ||||    
T  41833874 gagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcattatttt 41833951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 19059633 - 19059565
Alignment:
Q  134 ttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||| |||||||||||| ||| || ||| ||||| ||||||| || |||||||    
T  19059633 ttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgtttt 19059565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 39669321 - 39669245
Alignment:
Q  126 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||| ||||||| |||  |||||| |||||||| || ||| ||||||||||||| | ||||||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgtttt 39669245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 41834139 - 41834069
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 196  Q
    ||||||||||||||||||||||||| ||| ||| |||  |||||||||| ||| ||||||||||||| ||||    
T  41834139 gagaaattcttgtgtaggaacgaacataa-ctagcattattacaaacaacaaattaaaacatgacacgtcat 41834069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 7062038 - 7062084
Alignment:
Q  156 tatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  7062038 tatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 7062084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 42180805 - 42180759
Alignment:
Q  156 tatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||| ||||||||||| ||||||||||||||||| ||||| ||||    
T  42180805 tatcattcttacaaacaacaaactaaaacatgacacatcattatttt 42180759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 11891 - 11801
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||    
T  11891 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccataaatg 11801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 11630 - 11703
Alignment:
Q  129 aattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||| ||||||||||    
T  11630 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgtttt 11703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 16115308 - 16115218
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttttccaccataaatg 16115218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 31860079 - 31860169
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||| ||||| |||||||||||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtcattatttttccaccataaatg 31860169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 42028842 - 42028752
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || || ||||||||||||||||||||    
T  42028842 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaatg 42028752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 2059490 - 2059571
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttcca 206  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttttcca 2059571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 7317632 - 7317725
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||    
T  7317632 aaagagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttttccaccataaatg 7317725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 7317901 - 7317833
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  7317901 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacac 7317833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 15332928 - 15332849
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  15332928 aagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 15332849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 36059358 - 36059285
Alignment:
Q  118 taaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||| |||||||||||||    
T  36059358 taaaaaagagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac 36059285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 13280102 - 13280022
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || || |||||||    
T  13280102 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 13280022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 31860352 - 31860272
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| || |||||||    
T  31860352 aaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgtttt 31860272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 42028571 - 42028655
Alignment:
Q  118 taaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| || |||||||    
T  42028571 taaaaatgagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgtttt 42028655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 13279840 - 13279901
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  13279840 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 3671822 - 3671899
Alignment:
Q  126 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 204  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||| ||||||    
T  3671822 agaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacatcattttttttc 3671899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 31470587 - 31470663
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| ||| ||||||||||||| ||||||||||    
T  31470587 gagaaattcttgtgtaggaacgaacctaa-ctatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 31470663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 2059749 - 2059671
Alignment:
Q  124 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||| ||||| ||||||| || |||||||    
T  2059749 agagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 2059671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 16115046 - 16115123
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||| ||| ||||| ||||||| || |||||||    
T  16115046 gagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 16115123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 38085967 - 38086032
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||||||| ||| |||||||||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaa-ctatcattcttacaaacaacaaattaaaacatgacac 38086032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaa 182  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 31470847 - 31470763
Alignment:
Q  119 aaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 204  Q
    ||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||| ||| ||||  ||||||| ||||| ||||||    
T  31470847 aaaaaggagaaatttttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaataatgacacatcattttttttc 31470763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 38086231 - 38086154
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||| ||||||||| || |||||||  |||||| ||||||||||| ||| ||||| |||| || ||||||||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgtttt 38086154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 3672087 - 3672010
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||| || ||||||||| ||||| ||||||  ||||||| || ||| ||||| || |||| ||||||||||    
T  3672087 gagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgtttt 3672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 36059247 - 36059276
Alignment:
Q  124 agagaaattcttgtgtaggaacgaacctaa 153  Q
    ||||||||||||||||||||||||||||||    
T  36059247 agagaaattcttgtgtaggaacgaacctaa 36059276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 37994708 - 37994798
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || || ||||||||||||||| ||||    
T  37994708 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttttccaccatgaatg 37994798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 37994972 - 37994895
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||    
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgtttt 37994895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 44036811 - 44036904
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||| | ||||||||||| || ||||||||||||||| ||||    
T  44036811 aaagagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttttccaccatgaatg 44036904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 2814508 - 2814430
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 203  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||||||||||| |||||||||||    
T  2814508 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttt 2814430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 41540040 - 41539969
Alignment:
Q  119 aaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||||    
T  41540040 aaaaaagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacac 41539969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 14193588 - 14193512
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||| ||||    
T  14193588 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcattttttt 14193512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 397271 - 397192
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||| |||||||||||  |||||| |||| |||||| ||| ||||||||||||| ||||||||||    
T  397271 aagagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgtttt 397192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 41539769 - 41539847
Alignment:
Q  124 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||| ||||||| || |||||||    
T  41539769 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgtttt 41539847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 2814241 - 2814308
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||| ||||||||    
T  2814241 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaatcatgacac 2814308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 397007 - 397072
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||| ||||    
T  397007 gagaaattcttgtgcaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacataacac 397072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 14193322 - 14193400
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||| |||| |||||||||||||||  ||| ||  |||||||||| ||| ||||||||||||| ||||||||||    
T  14193322 aagagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgtttt 14193400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 33219072 - 33219162
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||  | |||||||||||||||||||||||    
T  33219072 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgtttttccaccataaatg 33219162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 33214704 - 33214613
Alignment:
Q  124 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  33214704 agagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 33214613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 10598805 - 10598898
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    |||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  10598805 aaagggaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 10598898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 33214442 - 33214520
Alignment:
Q  124 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  33214442 agagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33214520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 27073172 - 27073095
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  27073172 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 27073095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 36274392 - 36274299
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    |||||||||||||| |||||||||||| |||| |||||||| |||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  36274392 aaagagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 36274299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 27072912 - 27072974
Alignment:
Q  124 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  27072912 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 36635502 - 36635425
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||||||||||||  ||||||  |||||||||| ||| ||||||||||||| ||||||||||    
T  36635502 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 36635425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 19580577 - 19580497
Alignment:
Q  122 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||| |||||||||||||||  |||||| ||||||||||| ||| ||||||||||||  ||||||||||    
T  19580577 aaagagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgtttt 19580497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 36274120 - 36274196
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||||| || |||||||    
T  36274120 gagaaatt-ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 36274196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 36635241 - 36635303
Alignment:
Q  128 aaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    |||||||||||||||||||||||||| |||||||  |||||||||| ||| |||||||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaa-ctatcattgttacaaacaacaaattaaaacatgacac 36635303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 10599062 - 10599000
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatg 187  Q
    ||||||||||||||| | |||||||||||  |||||||||||||||||| ||| |||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacatg 10599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 11651000 - 11651077
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||| || ||||||||||||  |||||| ||||||||||| ||  ||||| |||| |  ||||||||||    
T  11651000 gagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatgatatatcattgtttt 11651077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 33022163 - 33022254
Alignment:
Q  124 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  33022163 agagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 33022254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 33022431 - 33022355
Alignment:
Q  126 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||||| || |||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33022355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 21389289 - 21389208
Alignment:
Q  121 aaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 203  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||| |||||    
T  21389289 aaaagataaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcatttttttt 21389208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 7789933 - 7789856
Alignment:
Q  126 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 203  Q
    ||||||||||||||||||| ||||||||  |||||| ||||||||||| ||| ||||||||||||| |||||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttt 7789856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 21389021 - 21389098
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    ||||||||||| |||||||||||||||||  |||||| ||||||||||| ||| |||||||||| || ||||||||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgtttt 21389098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 7789678 - 7789744
Alignment:
Q  136 gtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 203  Q
    |||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||  |||||||||||    
T  7789678 gtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacatgtcattgttttt 7789744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 37446 - 37536
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||||||||||||||||||||||  ||| ||||||||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  37446 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 37536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 37691 - 37648
Alignment:
Q  144 acgaacctaatctatcatccttacaaacaataaactaaaacatg 187  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||    
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 37648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 19804797 - 19804887
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 215  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||| ||| | ||||| ||||| || ||||||||||||||| ||||    
T  19804797 gagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttttccaccatgaatg 19804887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 40521280 - 40521203
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  40521280 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgtttt 40521203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 28949069 - 28948991
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 204  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||| ||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacatgacacgtcattttttttc 28948991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 7298635 - 7298712
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||||||||||||||||||||||||||  ||||||  |||||||||| ||| ||||||||||||| ||||||||||    
T  7298635 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 7298712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 7298905 - 7298835
Alignment:
Q  120 aaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||| ||||    
T  7298905 aaaaagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacataacac 7298835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 19805682 - 19805612
Alignment:
Q  121 aaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| ||| || ||| |||||||||||||    
T  19805682 aaaagagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacac 19805612  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 40521014 - 40521086
Alignment:
Q  123 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 196  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||| ||||||| ||||    
T  40521014 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaatatgacacgtcat 40521086  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 16979681 - 16979604
Alignment:
Q  125 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 203  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||| || ||| ||||||||||||| ||||| |||||    
T  16979681 gagaaattcttgtgtaggaacgaatctaa-ctatcattcttacaaataacaaattaaaacatgacacgtcatttttttt 16979604  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 46567960 - 46568028
Alignment:
Q  128 aaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcatt 197  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||| ||| ||||||||||||| |||||    
T  46567960 aaattcttgtgtaggaacgaacttaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcatt 46568028  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 46568191 - 46568145
Alignment:
Q  156 tatcatccttacaaacaataaactaaaacatgacacttcattgtttt 202  Q
    |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  46568191 tatcattcttacaaacaacaaattaaaacatgacacatcattgtttt 46568145  T

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Target: scaffold0140 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 15841 - 15913
Alignment:
Q  119 aaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 191  Q
    |||| ||||||||||||||||||||||||||||||  |||||| ||||||||||| ||| |||||||||||||    
T  15841 aaaatagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 15913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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