View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0631_low_9 (Length: 442)
Name: NF0631_low_9
Description: NF0631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0631_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 30 - 402
Target Start/End: Original strand, 2628678 - 2629050
Alignment:
| Q |
30 |
gttattgccatttttgatgcctggttggtggtggccaaaccaaacacagtacatagcttcttacatttgtgcctcgtgtcctgtatggtcttatattgtt |
129 |
Q |
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| T |
2628678 |
gttattgccatttttgatgcctggttggtggtggccaaaccaaacacagtacatagcttcttacatttgtgcctcgtgtcctgtatggccttatattgtt |
2628777 |
T |
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| Q |
130 |
gccacgccttctcttattgtcctgctttccaacatttccaactcattctcaatcctatcatcaaaccctttattcttactctttctcacttgcattatgt |
229 |
Q |
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| T |
2628778 |
gccacgccttctcttattgtcctgctttccaacatttccaactcattctcaatcctatcatcaaaccctttattcttactctttctcacttgcattatgt |
2628877 |
T |
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| Q |
230 |
ggggaatcaacttgagaagattaagaaggatagtttatgtttatggtatatgtaataggaaaatatttgatgtttaatgcaccattagtccagggaaata |
329 |
Q |
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| T |
2628878 |
gaggaatcaacttgagaagattaagaaggatagtttatgtttatggtatatgtaataggaaaatatttgatgtttaatgcaccattagtccagggaaata |
2628977 |
T |
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| Q |
330 |
atctcattggccacaaacctgtgatttccgccaaaatcaactgaaaattttctcaatttggtcatataagatg |
402 |
Q |
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| T |
2628978 |
atctcattggccacaaacctgtgatttccgccaaaatcaactgaaaattttctcaatttggtcatataagatg |
2629050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 435
Target Start/End: Original strand, 2630745 - 2630780
Alignment:
| Q |
400 |
atgccacgattttgggatgacgcttcaatgcctttg |
435 |
Q |
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| T |
2630745 |
atgccacaattttgggatgacgcttcaatgcctttg |
2630780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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