View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0632_high_1 (Length: 660)
Name: NF0632_high_1
Description: NF0632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0632_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 12 - 551
Target Start/End: Complemental strand, 41028687 - 41028150
Alignment:
| Q |
12 |
acagacgggtaaatcctaactataagcctcattgttcaacttacttttcaattgattatctaccagcagctgcatgatgtctttagagtccataatgaca |
111 |
Q |
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| T |
41028687 |
acagaagggtaaatcctaactataagcctcattgttcaacttacttttcaattgattatctaccagcagctgcatgatgtctttgaagt--ataatgaca |
41028590 |
T |
|
| Q |
112 |
aggttaatggccgcaaaacacaggttttgaatcttttgattctgtgctatttgaagtcaccgcgacatggaaaaagcttcaaaaagaggaggatcagcac |
211 |
Q |
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| T |
41028589 |
aggttaatggccgcaaaacacaggttttgaatcttttgattccgtgctatttgaagtaaccgcgacatggcaaaagcttcaaaaagagtaggatcagcac |
41028490 |
T |
|
| Q |
212 |
aaatttcctctgtttcacaagccaagagagccacactattgttgcaatgggattgttttccagcattattcaatattaatttctttaatgaaatctctag |
311 |
Q |
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| T |
41028489 |
aaatttcctctgtttcacaagccaagagagccacactattgttgcaatgggattgttttccagcattattcaatattaatttctttaatgaaatctctag |
41028390 |
T |
|
| Q |
312 |
tttctccacctacttcaagaagacaacttaacctagatttctaaattctccagatggaataacatatgggaaccattgagaaaaaactagttggtctttc |
411 |
Q |
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| T |
41028389 |
tttctccacctacttcaagaagacaacttaacctagatttctaaattctccagatggaataacatatgggaaccattgagaaaaaactagttggtctttc |
41028290 |
T |
|
| Q |
412 |
ctcagtttcaaaacatctcattcaatcgcagagaataagttattcgcaattgcattgcagattacttagcaaaaatggaaaaattgcattgtttagacat |
511 |
Q |
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| T |
41028289 |
ctcggtttcaaaacatctcattcaatcgcagagaataagttattcgcaattgcactgcagattacttagcaaaaatggaaaaattgcattgtttagacat |
41028190 |
T |
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| Q |
512 |
tgcaacagatgcagagtttcaaatcaaaactacaacctaa |
551 |
Q |
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| T |
41028189 |
tgcaacagatgcagagtttcaaatcaaaactaaaacctaa |
41028150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 41035530 - 41035306
Alignment:
| Q |
12 |
acagacgggtaaatcctaactataagcctcattgttcaacttacttttcaattgattatctaccagcagctgcatgatgtctttagagtccataatgaca |
111 |
Q |
| |
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||||| ||||| | |||||||| |||| |||| ||||||||| | |||||||| ||||| ||||| |||||||||||||||| |||||| ||| ||| |
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| T |
41035530 |
acagaagggtagaccctaactacgagccccattattcaacttatgtgtcaattgaatatctcccagctgctgcatgatgtctttgcagtccaaaataaca |
41035431 |
T |
|
| Q |
112 |
aggttaatggccgcaaaacacaggttttgaatcttttgattctgtgctatttgaagtcaccgcgacatggaaaaagcttcaaaaagaggaggatcagcac |
211 |
Q |
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| T |
41035430 |
aggttaatggctgcaaaacacaggttttgaatc--ttgattccttgctatttgaagtcaccgcgccatggcaaaagcttcagaaagagtaggatcaacac |
41035333 |
T |
|
| Q |
212 |
aaatttcctctgtttcacaagccaaga |
238 |
Q |
| |
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|||||||||||||||||||||| |||| |
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| T |
41035332 |
aaatttcctctgtttcacaagctaaga |
41035306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 580 - 621
Target Start/End: Complemental strand, 41028151 - 41028110
Alignment:
| Q |
580 |
aatactaaagtttggtttcagtgaagatttaatattgtgaat |
621 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41028151 |
aatactaaagtttggtttcagtgaagattcaatattgtgaat |
41028110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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