View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0632_high_4 (Length: 354)
Name: NF0632_high_4
Description: NF0632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0632_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 343
Target Start/End: Original strand, 3532058 - 3532371
Alignment:
| Q |
30 |
gttagaaccactcattagaaatccagccttatcattcaatccattcattacattggcacatttttggttcaatggtttcacaatccaatcctttggtgac |
129 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3532058 |
gttagaaccactcattagaaatccagccctatcattcaatccattcattacattggcacatttttggttcaatggtttcacaatccaatcctttggtgac |
3532157 |
T |
|
| Q |
130 |
ccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcagtgtcatagt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3532158 |
ccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagaggatttgttttcaagaagcttaaatcagtgtcatagt |
3532257 |
T |
|
| Q |
230 |
taaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaactgcttatgttttgacttgg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |
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| T |
3532258 |
taaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaattgtctatgttttgacctgg |
3532357 |
T |
|
| Q |
330 |
acctcttagttcat |
343 |
Q |
| |
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|||||||||||||| |
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| T |
3532358 |
acctcttagttcat |
3532371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 343
Target Start/End: Original strand, 3527631 - 3527944
Alignment:
| Q |
30 |
gttagaaccactcattagaaatccagccttatcattcaatccattcattacattggcacatttttggttcaatggtttcacaatccaatcctttggtgac |
129 |
Q |
| |
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||||||||||||||||||||| || |||||||||||||| |||||||||||| |||||||||| ||||||||||| |||||| || | | |
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| T |
3527631 |
gttagaaccactcattagaaaccctgccttatcattcaaattattcattacattagcacattttttgttcaatggttgtttgtcccaatcacttcgatcc |
3527730 |
T |
|
| Q |
130 |
ccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcagtgtcatagt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3527731 |
ccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagaggatttgttttcaagaagcttaaatcaatgtcatagt |
3527830 |
T |
|
| Q |
230 |
taaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaactgcttatgttttgacttgg |
329 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527831 |
taaagccagaaacaaatacaagaacattgggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaactgcttatgttttgacttgg |
3527930 |
T |
|
| Q |
330 |
acctcttagttcat |
343 |
Q |
| |
|
|||||||||||||| |
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| T |
3527931 |
acctcttagttcat |
3527944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 30 - 343
Target Start/End: Original strand, 3549339 - 3549656
Alignment:
| Q |
30 |
gttagaaccactcattagaaatccagccttatcattcaatccattcattacattg----gcacatttttggttcaatggtttcacaatccaatcctttgg |
125 |
Q |
| |
|
||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| |||||||||| |||| ||||| | |||||||||| ||||| |
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|
| T |
3549339 |
gttagaaccactcatgagaaaccctgccttgtcattcaatccattcattacattaattagcacattttttattcactggttgctcaatccaatcttttgg |
3549438 |
T |
|
| Q |
126 |
tgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcagtgtca |
225 |
Q |
| |
|
|||||| |||| ||||||||||||||||| || ||||||||||||||||||||| | | |||||||| ||||| |||||||||||||||||||||||| |
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| T |
3549439 |
tgaccctattgatcatgcataggaatgtacttcatacaccaatttgtctcctatgttaacatttagaggctttgtcttcaagaagcttaaatcagtgtca |
3549538 |
T |
|
| Q |
226 |
tagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaactgcttatgttttgac |
325 |
Q |
| |
|
|| || |||||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||||||||||||| || | |||| || ||||||||| |
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| T |
3549539 |
taatttaagccagaaacaaaaactagaacatttggatttgctttgtggactgttgttactccttggctcatgtatttgtaccaattgtcattgttttgac |
3549638 |
T |
|
| Q |
326 |
ttggacctcttagttcat |
343 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
3549639 |
ctggacctcgtagttcat |
3549656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 30 - 343
Target Start/End: Original strand, 3554930 - 3555243
Alignment:
| Q |
30 |
gttagaaccactcattagaaatccagccttatcattcaatccattcattacattggcacatttttggttcaatggtttcacaatccaatcctttggtgac |
129 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||||| |||||||||||| |||||||||| ||||||||||| | |||||| || || | |
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| T |
3554930 |
gttagaaccactcatgagaaaccctgccttatcattcaaattattcattacattagcacattttttgttcaatggttgcttgtcccaatcacttcgttcc |
3555029 |
T |
|
| Q |
130 |
ccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcagtgtcatagt |
229 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||| | | |||||||| ||||| |||||||||||||||||||||||||| | |
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| T |
3555030 |
ccacttgaccatgcataggaatgtacctcgtacaccaatttgttccctatgttaacatttagaggctttgtcttcaagaagcttaaatcagtgtcataat |
3555129 |
T |
|
| Q |
230 |
taaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaactgcttatgttttgacttgg |
329 |
Q |
| |
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| |||||||||||||| |||||||||| ||||||| |||| ||||| ||||| |||||||||||||||||||| |||||| || || |||||| |||| |
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| T |
3555130 |
ttaagccagaaacaaagactagaacatctggatttgctttatgaacagttgtagctccttggctcatgtacttgtgccaattgttttcgttttgttttgg |
3555229 |
T |
|
| Q |
330 |
acctcttagttcat |
343 |
Q |
| |
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|||||||||||||| |
|
|
| T |
3555230 |
acctcttagttcat |
3555243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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