View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0632_high_5 (Length: 344)
Name: NF0632_high_5
Description: NF0632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0632_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 337
Target Start/End: Original strand, 4711856 - 4712162
Alignment:
| Q |
30 |
atttactcccacaataattctttaacannnnnnncttatactccccaaataagtaagtgtcaaagcaatgagtttaagcatgtgaattcggtggataaag |
129 |
Q |
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| T |
4711856 |
atttactcccacaataattctttaacatttttttcttatattccccaaataagtaagtgtcaa-gcaatgagtttaagcatgtgaattcggtggataaag |
4711954 |
T |
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| Q |
130 |
tagaattagctggcactggcatactcttcctcccaagtttgcatgcaacaaagctgacaaaaatgttactttgaattatgtatgccaaatggaaaacgtt |
229 |
Q |
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| T |
4711955 |
tagaattagctggcactggcatactcttcctcccaagtttgcatgcaacaaagctgacaaaaatgttactttgaattatgtatgccaaatggaaaacgtt |
4712054 |
T |
|
| Q |
230 |
ccaaaactttggtttttccttttatacataaaactgataagcttgaaaaagttgcaacaacacaacacaaaaagtaacttcacctttcatttactactcc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712055 |
ccaaaactttggtttttccttttatacataaaactgataagcttgaaaaagttgcaacaacacaacacaaaaagtaacttcacctttcatttactactcc |
4712154 |
T |
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| Q |
330 |
ctatgata |
337 |
Q |
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||||||| |
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| T |
4712155 |
ttatgata |
4712162 |
T |
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