View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0632_low_16 (Length: 286)

Name: NF0632_low_16
Description: NF0632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0632_low_16
NF0632_low_16
[»] chr5 (1 HSPs)
chr5 (1-61)||(4287507-4287567)
[»] chr7 (3 HSPs)
chr7 (103-146)||(38572391-38572434)
chr7 (103-146)||(42513242-42513285)
chr7 (64-97)||(38572462-38572495)
[»] chr4 (2 HSPs)
chr4 (64-99)||(36050519-36050554)
chr4 (64-99)||(36053778-36053813)
[»] chr3 (2 HSPs)
chr3 (64-97)||(30911921-30911954)
chr3 (62-98)||(55211934-55211970)


Alignment Details
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4287507 - 4287567
Alignment:
Q  1 ttctacattgttaaagataatagaaaaagagagtaacaatattttttacttaactactact 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4287507 ttctacattgttaaagataatagaaaaagagagtaacaatattttttacttaactactact 4287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 38572434 - 38572391
Alignment:
Q  103 atgactcaccttagtctagaaggatctagaaggtatcttgttag 146  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  38572434 atgactcaccttaatctaaaaggatctagaaggtatcttgttag 38572391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 42513285 - 42513242
Alignment:
Q  103 atgactcaccttagtctagaaggatctagaaggtatcttgttag 146  Q
    ||||||||||||| |||||||||||||||||||| | |||||||    
T  42513285 atgactcaccttaatctagaaggatctagaaggtctattgttag 42513242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 38572495 - 38572462
Alignment:
Q  64 tgataggatatttagaataatgagtactaatgtg 97  Q
    |||||| |||||||||||||||||||||||||||    
T  38572495 tgatagtatatttagaataatgagtactaatgtg 38572462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 36050519 - 36050554
Alignment:
Q  64 tgataggatatttagaataatgagtactaatgtggt 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  36050519 tgataggatatttagaataatgagtactaatgtggt 36050554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 36053778 - 36053813
Alignment:
Q  64 tgataggatatttagaataatgagtactaatgtggt 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  36053778 tgataggatatttagaataatgagtactaatgtggt 36053813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 30911921 - 30911954
Alignment:
Q  64 tgataggatatttagaataatgagtactaatgtg 97  Q
    |||||||||| |||||||||||||||||||||||    
T  30911921 tgataggatacttagaataatgagtactaatgtg 30911954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 55211970 - 55211934
Alignment:
Q  62 actgataggatatttagaataatgagtactaatgtgg 98  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  55211970 actgataggatatttagaataaggagcactaatgtgg 55211934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 493 times since January 2019
Visitors: 4087