View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0632_low_17 (Length: 285)
Name: NF0632_low_17
Description: NF0632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0632_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 38312306 - 38312582
Alignment:
| Q |
1 |
gcctcgtcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccatattagttacggtgcagtgtgttgaggctgccg |
100 |
Q |
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| T |
38312306 |
gcctcgtcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccatattagttacggtgcagtgtgttgaggctgcca |
38312405 |
T |
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| Q |
101 |
aagcaatgtgagctaagcgcgacaaccttgcttctgtggttagctcagctgcgaatgtccattcaatttcacatgattgtatcgctactcttacttctac |
200 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38312406 |
aagcaatgtgagctaagtgttacaaccttgcttctgtggttagctcagctgcgaatgtccattcaatttcacatgattgtatcgctactcttacttctac |
38312505 |
T |
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| Q |
201 |
agctgccataggtaacactttttacactcattgttaagcatctatttactattataacagagtcaatgtttcatatc |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38312506 |
agctgccataggtaacactttttacactcattgttaagcatctatttactattataacagagtcaatgtttcatatc |
38312582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 38268539 - 38268803
Alignment:
| Q |
7 |
tcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccatattagttacggtgcagtgtgttgaggctgccgaagcaa |
106 |
Q |
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| T |
38268539 |
tcaacacaaaacaaggatgagaagatggccaagacagacgtggctgttgcttcggctgccactctagttgccgcacaatgtgtggaggctgccgaagcaa |
38268638 |
T |
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| Q |
107 |
tgtgagctaagcgcgacaaccttgcttctgtggttagctcagctgcgaatgtccattcaatttcacatgattgtatcgctactcttacttctacagctgc |
206 |
Q |
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|| ||||| |||||||| ||||||| || ||||| |||||||||| |||||| | ||| |||||| |||| ||||||||||| || ||||||| |
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| T |
38268639 |
tgggagctgagcgcgaccaccttgcatcggtggtcagctcagctgtgaatgttc------gttctcatgatgatatcactactcttactgctgcagctgc |
38268732 |
T |
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| Q |
207 |
cataggtaacactttttacactcattgttaagcatctatttactattataacagagtcaatgtttcatatc |
277 |
Q |
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|| |||||| |||||| | | ||| || ||||||||||| || ||||| ||||||||||||||||| |
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| T |
38268733 |
cacaggtaagacttttagcccacatcattgagcatctatttcataatataatttagtcaatgtttcatatc |
38268803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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