View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0632_low_2 (Length: 537)
Name: NF0632_low_2
Description: NF0632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0632_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 37137457 - 37137021
Alignment:
| Q |
1 |
atcacaacattttcaaaatattcacttgtaatctcttctggttttcatgattattgaatattcacaaagaattgatgataatgtcacatgtatagaatga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37137457 |
atcacaacattttcaaaatattcacttgtaatctcttctagttttcatgattattgaatattcacaaagaattgatgataatgtcacatgtatagaatga |
37137358 |
T |
|
| Q |
101 |
gacaccaactcaccaccaaaataatttcttagtatctaaccatcccatcaacnnnnnnnnnnnnnnnnncacataaaataagtgagttgaaattcatgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37137357 |
gacaccaactcaccaccaaaataatttcttagtatctaaccatcccatcaacatatatat----------acataaaataagtgagttgaaattcatgta |
37137268 |
T |
|
| Q |
201 |
acaatgttaattctatataacaacaatattaacttgagtttttattatgcatgtgataatctaataggaatcgaatatgtcaaattgcaagaagagttga |
300 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37137267 |
acaatgttaattctatataacaacaatattgacttgagtttttattatgcatgtgataatctaataggaatcgaatgtgtcaaattgcaagaagagttga |
37137168 |
T |
|
| Q |
301 |
gtgattttacctgttgacaattgagaagagctaaaatctttcttctgactctcatcaatgctcttcttcttcttcatggttgacaccaaaggaacaatgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37137167 |
gtgattttacctgttgacaattgagaagagctaaaatctttcttctgactctcatcaatgctcttcttcttcttcatggttgacaccaaaggaacaatgc |
37137068 |
T |
|
| Q |
401 |
cttcttcatcttcatattcttcaccctccatatttttcctctgatga |
447 |
Q |
| |
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||||||||||||| ||||||||||||||||| |||||||||| |||| |
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| T |
37137067 |
cttcttcatcttcgtattcttcaccctccatgtttttcctcttatga |
37137021 |
T |
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