View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0632_low_24 (Length: 227)
Name: NF0632_low_24
Description: NF0632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0632_low_24 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40566524 - 40566298
Alignment:
| Q |
1 |
tcatcaagcctgttgcataaagccacacatcctgtggtgtagctgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctg |
100 |
Q |
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| T |
40566524 |
tcatcaagcctgttgcataaagccacacatcctgtggtgtagttgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctg |
40566425 |
T |
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| Q |
101 |
tcaacttgtttcgagttggagagatgtaaaaatgtgtcatgttcatatcccgcagcgtttggtatatgaatctgcccttttctgcgtagcaatcgctggc |
200 |
Q |
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| T |
40566424 |
tcaacttgtttcgagttggcgagatgtaaaaatgtgtcatgttcatatcccgcagcgtttggtatatgaatctgcccttttctgcgtagcaatcgctggc |
40566325 |
T |
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| Q |
201 |
tactggccatgcgacgtgcaattcacc |
227 |
Q |
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| T |
40566324 |
tactggccatgcaacgtgcaattcacc |
40566298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 40571131 - 40571062
Alignment:
| Q |
81 |
cgtgtcacagccaactgctgtcaacttgtttcgagttggagagatgtaaaaatgtgtcatgttcatatcc |
150 |
Q |
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| T |
40571131 |
cgtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgtcatgttgatatcc |
40571062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 40589493 - 40589358
Alignment:
| Q |
8 |
gcctgttgcataaagccacacatcctgtggtgtagctgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaactt |
107 |
Q |
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| T |
40589493 |
gcctgttgcaccaagccaaacatccagaggtgtagttgtttccttcagaatcaattactccgagtattccagatgtatcacagccaactgctaccaactt |
40589394 |
T |
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| Q |
108 |
gtttcgagttggagagatgtaaaaatgtgtcatgtt |
143 |
Q |
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| T |
40589393 |
gtttcgagtgggagagaggtgaaaatgtgtcatgtt |
40589358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 40595899 - 40595756
Alignment:
| Q |
6 |
aagcctgttgcataaagccacacatcctgtggtgtagctgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaac |
105 |
Q |
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| T |
40595899 |
aagcctgttgcacaaggccacacatgcagtggtgtatgtgtttcctttagaatcaattgcttcgagtagtcccattgtgtcacatccaactgctatcaac |
40595800 |
T |
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| Q |
106 |
ttgtttcgagttggagagatgtaaaaatgtgtcatgttcatatc |
149 |
Q |
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| T |
40595799 |
ttgttttgagttggcgagacgtgaaaatgtggcatcttgatatc |
40595756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40577637 - 40577408
Alignment:
| Q |
1 |
tcatcaagcctgttgcataaagccacacatcctgtggtgtagctgtttcccccagaatca--atcgccga----gagtgctccaatcgtgtcacagccaa |
94 |
Q |
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| T |
40577637 |
tcatcaagcctgttgcagaaagccacacatcctgtggcgtaggttttttcctcagaatcagcttctccgactgcgagtattcccaccgtgtcacaaccaa |
40577538 |
T |
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| Q |
95 |
ctgctgtcaacttgtttcgagttggagagatgtaaaaatgtgtcatgttcatatcccgcagcgtttggtatatgaatctgcccttttctgcgtagcaatc |
194 |
Q |
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| T |
40577537 |
ctgctataaacttgttttgagtt---gagatgtgaaaatgtgtcacgttgatttcctgaaatgtttggtttacttgtgtgccattttttgaatagcaata |
40577441 |
T |
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| Q |
195 |
gctggctactggccatgcgacgtgcaattcacc |
227 |
Q |
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| T |
40577440 |
gctggctactggccatgcaacgtgaagttcacc |
40577408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 2017158 - 2017289
Alignment:
| Q |
9 |
cctgttgcataaagccacacatcctgtggtgtagctgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaacttg |
108 |
Q |
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| T |
2017158 |
cctgttgcacaaagccaaacatcccgtggtgtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaacaaacttg |
2017257 |
T |
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| Q |
109 |
tttcgagttggagagatgtaaaaatgtgtcat |
140 |
Q |
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| T |
2017258 |
tttcgtgttgatgagacgggaaaatgtgtcat |
2017289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 8490797 - 8490736
Alignment:
| Q |
82 |
gtgtcacagccaactgctgtcaacttgtttcgagttggagagatgtaaaaatgtgtcatgtt |
143 |
Q |
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| T |
8490797 |
gtgtcacaaccaactgctatcaacttgtttccggttggtgagatttgaagatgtgtcatgtt |
8490736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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