View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_high_4 (Length: 446)
Name: NF0633_high_4
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 44573932 - 44573672
Alignment:
| Q |
19 |
aattaaattgatatgaaattcagataagccaccaatgtcagatttgtcatactttcttgactaccaaggatacaagatttgggctcctgttcacaatgat |
118 |
Q |
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| T |
44573932 |
aattaaattgatatgaaattcagataagccaccaatgtcagatttgtcatactttcttgactaccaaggatacaagatttgggctcctgttcacaatgat |
44573833 |
T |
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| Q |
119 |
ctacctcttggtccaactacaaacatatctactatttcaccttttctcactctcaatttgatgggtcccaaactttatgtaaatacagacaaggtaatgt |
218 |
Q |
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| T |
44573832 |
ctacctcttggtccaactacaaacatatctactatttcaccttttctcactctcaatttgatgggtcccaaactttatgtaaatacagacaaggtaatgt |
44573733 |
T |
|
| Q |
219 |
atgtatgtatgttgattttcaaacccttcctcttcatataataataatagtattatactttaatttca |
286 |
Q |
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| T |
44573732 |
atgt----atgttgattttcaaagccttcctcttcat---ataataatagtattatactttaatttca |
44573672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 5187259 - 5187307
Alignment:
| Q |
368 |
gagtttctctttgaattttcataatagtaaattagaattgttttacttc |
416 |
Q |
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| T |
5187259 |
gagtttctctttgaattttcaaaatagtaaattagaatcgttttacttc |
5187307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 25218375 - 25218331
Alignment:
| Q |
369 |
agtttctctttgaattttcataatagtaaattagaattgttttac |
413 |
Q |
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| T |
25218375 |
agtttctctttgaattttcaaaatagtaaattagagttgtcttac |
25218331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 37803045 - 37803088
Alignment:
| Q |
369 |
agtttctctttgaattttcataatagtaaattagaattgttttac |
413 |
Q |
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|||||||||| ||||||||| |||||||||||||| ||||||||| |
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| T |
37803045 |
agtttctctt-gaattttcagaatagtaaattagagttgttttac |
37803088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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