View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_high_5 (Length: 418)
Name: NF0633_high_5
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 88 - 418
Target Start/End: Original strand, 4764912 - 4765242
Alignment:
| Q |
88 |
catcatcatatagttcattttaacttaatttagnnnnnnnttaccaccttttcccattgtaaatattgcaggttatgcagtagccaattctgatatacca |
187 |
Q |
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| T |
4764912 |
catcatcatatagttcattttaacttaatttagaaaaaaattaccaccttttcccactgtaaatattgcaggttatgcagtagccaattctgatatacca |
4765011 |
T |
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| Q |
188 |
cagcaggttatttattatgtgtaataaataaggatgcatttgtaatcagttgtataaaagtactcatcaactcagagttttccaacacttgcttctttac |
287 |
Q |
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| T |
4765012 |
cagcaggttatttattatgtgtaataaataaggatgcatttgtaatcagttgtataaaagtactcatcaactcagagttttccaacactttcttctttac |
4765111 |
T |
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| Q |
288 |
tttcggtaattttttaaaaataattatattctacaatactagtaccgtgaactcgtgcaaggcatgaggaaaaattcattgaaagagtcaacgttcgtta |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4765112 |
tttcggtaattttttaaaaataattatattctacaatactagtaccgtgaactcgtgcaaggcatgaggaaaaattcattgaaagagtcaacgttcgtta |
4765211 |
T |
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| Q |
388 |
caatttataatttgttgttcagttattggtt |
418 |
Q |
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||| ||||||||||||||||||||||||||| |
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| T |
4765212 |
caaattataatttgttgttcagttattggtt |
4765242 |
T |
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