View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0633_high_6 (Length: 360)
Name: NF0633_high_6
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 154 - 350
Target Start/End: Original strand, 35681513 - 35681709
Alignment:
| Q |
154 |
atgttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatatttgttaacagttgatagtatatat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
35681513 |
atgttactgatgcaaaaactgaaatcaaaatgcatccttttacttctttgggttgaagaactcacttttttcatattttttaacagttcatagtatatat |
35681612 |
T |
|
| Q |
254 |
gtttgaactctaaatgttattccttctagtttattcttagtagattacacacactcttattttaatttgtatggaagatcatctagtcacctctgtg |
350 |
Q |
| |
|
|||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35681613 |
gtttgaactctaaaagcaatcgcttctagtttattcctagtagattacacacactcttattttaatttgtatggaagatcatctagtcccctctgtg |
35681709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 35681233 - 35681324
Alignment:
| Q |
30 |
tataatccataccctgacattgttctgtgagaggaaattactggaaggaaacactcatgtttaaaatgtgtttgttgtgggagagttgaagt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
35681233 |
tataatccataccctgacattgttctgtgagagaaaattactggaaggaaacactcgtgtttaaattgtgtatgttgtgggagagttgaagt |
35681324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 154 - 350
Target Start/End: Complemental strand, 6272038 - 6271852
Alignment:
| Q |
154 |
atgttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatatttgttaacagttgatagtatatat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6272038 |
atgttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatattttttaacagttgatagtatatat |
6271939 |
T |
|
| Q |
254 |
gtttgaactctaaatgttattccttctagtttattcttagtagattacacacactcttattttaatttgtatggaagatcatctagtcacctctgtg |
350 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6271938 |
gtttgaactctaaatgttattgc----------ttcgtagtagattacacacactcttattttaatttgtatggaagagcatctagtcacctctgtg |
6271852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 154 - 350
Target Start/End: Original strand, 9824988 - 9825174
Alignment:
| Q |
154 |
atgttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatatttgttaacagttgatagtatatat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9824988 |
atgttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatattttttaacagttgatagtatataa |
9825087 |
T |
|
| Q |
254 |
gtttgaactctaaatgttattccttctagtttattcttagtagattacacacactcttattttaatttgtatggaagatcatctagtcacctctgtg |
350 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9825088 |
gtttgaactctaaatgttattgc----------ttcgtagtagattacacacactcttattttaatttgtatggaagatcatctagtcacctctgtg |
9825174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 157 - 350
Target Start/End: Complemental strand, 6262595 - 6262412
Alignment:
| Q |
157 |
ttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatatttgttaacagttgatagtatatatgtt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6262595 |
ttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatattttttaacagttgatagtatatatgtt |
6262496 |
T |
|
| Q |
257 |
tgaactctaaatgttattccttctagtttattcttagtagattacacacactcttattttaatttgtatggaagatcatctagtcacctctgtg |
350 |
Q |
| |
|
||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6262495 |
tgaactctaaatggtattgc----------ttcgtagtagattacacacactcttattttaatttgtatggaagatcatctagtcacctctgtg |
6262412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 9824862 - 9824954
Alignment:
| Q |
29 |
atataatccataccctgacattgttctgtgagaggaaattactggaaggaaacactcatgtttaaaatgtgtttgttgtgggagagttgaagt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9824862 |
atataatccataccctgacattgttctgtgagaggaaattactggaaggaaacactcatgtttaaaatgtgtttgttgtgggagagttgaagt |
9824954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 6262722 - 6262631
Alignment:
| Q |
30 |
tataatccataccctgacattgttctgtgagaggaaattactggaaggaaacactcatgtttaaaatgtgtttgttgtgggagagttgaagt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6262722 |
tataatccataccctgacattgttctgtgagaggaaattactggaaggaagcactcatgtttaaaatgtgtttgttttgggagagttgaagt |
6262631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 6272123 - 6272076
Alignment:
| Q |
74 |
aaggaaacactcatgtttaaaatgtgtttgttgtgggagagttgaagt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6272123 |
aaggaaacactcatgtttaaaatgtgtttgttctgggagagttgaagt |
6272076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3379 times since January 2019
Visitors: 4034