View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_high_8 (Length: 251)
Name: NF0633_high_8
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_high_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 41028687 - 41028450
Alignment:
| Q |
12 |
acagacgggtaaatcctaactataagcctcattgttcaacttacttttcaattgattatctaccagcagctgcatgatgtctttagagtccataatgaca |
111 |
Q |
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| T |
41028687 |
acagaagggtaaatcctaactataagcctcattgttcaacttacttttcaattgattatctaccagcagctgcatgatgtctttgaagt--ataatgaca |
41028590 |
T |
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| Q |
112 |
aggttaatggccgcaaaacacaggttttgaatcttttgattctgtgctatttgaagtcaccgcgacatggaaaaagcttcaaaaagaggaggatcagcac |
211 |
Q |
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| T |
41028589 |
aggttaatggccgcaaaacacaggttttgaatcttttgattccgtgctatttgaagtaaccgcgacatggcaaaagcttcaaaaagagtaggatcagcac |
41028490 |
T |
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| Q |
212 |
aaatttcctctgtttcacacgccaagagagccacactatt |
251 |
Q |
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| T |
41028489 |
aaatttcctctgtttcacaagccaagagagccacactatt |
41028450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 41035530 - 41035314
Alignment:
| Q |
12 |
acagacgggtaaatcctaactataagcctcattgttcaacttacttttcaattgattatctaccagcagctgcatgatgtctttagagtccataatgaca |
111 |
Q |
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||||| ||||| | |||||||| |||| |||| ||||||||| | |||||||| ||||| ||||| |||||||||||||||| |||||| ||| ||| |
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| T |
41035530 |
acagaagggtagaccctaactacgagccccattattcaacttatgtgtcaattgaatatctcccagctgctgcatgatgtctttgcagtccaaaataaca |
41035431 |
T |
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| Q |
112 |
aggttaatggccgcaaaacacaggttttgaatcttttgattctgtgctatttgaagtcaccgcgacatggaaaaagcttcaaaaagaggaggatcagcac |
211 |
Q |
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| T |
41035430 |
aggttaatggctgcaaaacacaggttttgaatc--ttgattccttgctatttgaagtcaccgcgccatggcaaaagcttcagaaagagtaggatcaacac |
41035333 |
T |
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| Q |
212 |
aaatttcctctgtttcaca |
230 |
Q |
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| T |
41035332 |
aaatttcctctgtttcaca |
41035314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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