View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_high_9 (Length: 244)
Name: NF0633_high_9
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_high_9 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 14812852 - 14812624
Alignment:
| Q |
14 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagattagtatgatatagtatattaa |
113 |
Q |
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| T |
14812852 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgata--gtatattaa |
14812755 |
T |
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| Q |
114 |
acttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtc |
213 |
Q |
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| T |
14812754 |
acttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtc |
14812655 |
T |
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| Q |
214 |
gttcttggatgtcaaattaaggaaaggtttc |
244 |
Q |
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| T |
14812654 |
gttcttggatgtcaaattaaggaaaggtttc |
14812624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 15259847 - 15259619
Alignment:
| Q |
14 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagattagtatgatatagtatattaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
15259847 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgata--gtatattaa |
15259750 |
T |
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| Q |
114 |
acttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtc |
213 |
Q |
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| T |
15259749 |
acttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtc |
15259650 |
T |
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| Q |
214 |
gttcttggatgtcaaattaaggaaaggtttc |
244 |
Q |
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| T |
15259649 |
gttcttggatgtcaaattaaggaaaggtttc |
15259619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 17521328 - 17521556
Alignment:
| Q |
14 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagattagtatgatatagtatattaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
17521328 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgata--gtatattaa |
17521425 |
T |
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| Q |
114 |
acttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521426 |
acttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtc |
17521525 |
T |
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| Q |
214 |
gttcttggatgtcaaattaaggaaaggtttc |
244 |
Q |
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| T |
17521526 |
gttcttggatgtcaaattaaggaaaggtttc |
17521556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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