View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0633_low_1 (Length: 885)

Name: NF0633_low_1
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0633_low_1
NF0633_low_1
[»] chr2 (4 HSPs)
chr2 (70-628)||(3452488-3453051)
chr2 (714-787)||(3452241-3452315)
chr2 (21-81)||(3453067-3453127)
chr2 (124-166)||(5403559-5403602)
[»] scaffold0182 (1 HSPs)
scaffold0182 (124-171)||(20162-20210)
[»] chr4 (2 HSPs)
chr4 (130-166)||(50693544-50693580)
chr4 (131-164)||(1149367-1149400)
[»] chr8 (2 HSPs)
chr8 (137-167)||(30674985-30675015)
chr8 (136-166)||(44411135-44411165)
[»] chr5 (1 HSPs)
chr5 (136-166)||(20721307-20721337)
[»] chr7 (1 HSPs)
chr7 (137-166)||(20397521-20397550)
[»] chr3 (1 HSPs)
chr3 (137-166)||(37321739-37321768)


Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 70 - 628
Target Start/End: Complemental strand, 3453051 - 3452488
Alignment:
Q  70 agtctttgattgaatttcattacgacttattctttaaggattacnnnnnnnnntaatttctcaatatatttatttaaaaagttaaacatttcaatttaaa 169  Q
    ||||||| |||||||||||||||||||| ||||||||||||| |          ||||||||||| ||||||||||||||||||||||||||||||| ||    
T  3453051 agtctttaattgaatttcattacgacttgttctttaaggattccaaaaaaaa--aatttctcaatgtatttatttaaaaagttaaacatttcaatttcaa 3452954  T
Q  170 atccgttttcataaaatattactattttaaattcataaa-gaactcttnnnnnnngtacttgatnnnnnnngtagttaagctaaatctagggattaggaa 268  Q
    || ||||||||| |||||||||||||||||||||||||| ||||||||       | ||| |||       |||||||||||||||||||||||||||||    
T  3452953 atgcgttttcatgaaatattactattttaaattcataaaagaactcttaaaaaaagcactggattaaaaaagtagttaagctaaatctagggattaggaa 3452854  T
Q  269 caaaaaatccaggctgtaatgtcggagaagaaacaaacgataaccagcgggagagtgagggagggtatgtttatgcggtgtcccactattgttaggtttt 368  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  3452853 caaaaaatccaggctgtaatgtcggggaagaaacaaacgataaccagcgggaaagtgagggagggtatgtttgtgcggtgtcccactattattagctttt 3452754  T
Q  369 tcccacatttgatatttttgactttatatataatgtttgttagattcatgaaacaggtttatgtgatgtgagagaaacaagagaaaaaatgggtaaaggc 468  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452753 tcccacattcaatatttttgactttatatataatgtttgttagattcatgaaacaggtttatgtgatgtgagagaaacaagagaaaaaatgggtaaaggc 3452654  T
Q  469 g------gaggagaagatgaagaaggagtaatgatggctggtgatttcttttggtcatataccgatgaacctcatgcttctcgccgtcgtcagatcctct 562  Q
    |      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452653 ggaggcggaggagaagatgaagaaggagtaatgatggctggtgatttcttttggtcatataccgatgaacctcatgcttctcgccgtcgtcagatcctct 3452554  T
Q  563 ccaaataccctcatattaaacaactctttggtcctgatcccttcgcattcttcaaggttcgtcgtc 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452553 ccaaataccctcatattaaacaactctttggtcctgatcccttcgcattcttcaaggttcgtcgtc 3452488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 714 - 787
Target Start/End: Complemental strand, 3452315 - 3452241
Alignment:
Q  714 aaatgccatgtgtaacaatagtttttaggaaaaatattggtgggcccc-aaaccctttgacaccttgagagatat 787  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3452315 aaatgccatgtgtaacaatagtttctaggaaaaatattggtgggccccaaaaccctttgacaccttgagagatat 3452241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 3453127 - 3453067
Alignment:
Q  21 caaattattatttcaattaggatttgagctcgagttcacccaaataaatagtctttgattg 81  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3453127 caaattattattttaattaggatttgagctcgagttcacccaaataaatagtctttgattg 3453067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 5403559 - 5403602
Alignment:
Q  124 aatttctcaa-tatatttatttaaaaagttaaacatttcaattt 166  Q
    |||||||||| | |||||||||||||||||||||||||||||||    
T  5403559 aatttctcaaatgtatttatttaaaaagttaaacatttcaattt 5403602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 20162 - 20210
Alignment:
Q  124 aatttctcaa-tatatttatttaaaaagttaaacatttcaatttaaaat 171  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  20162 aatttctcaaatgtatttatttaaaaagttaaacatttcaatttcaaat 20210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 50693580 - 50693544
Alignment:
Q  130 tcaatatatttatttaaaaagttaaacatttcaattt 166  Q
    ||||| |||||||||||||||||||||||||||||||    
T  50693580 tcaatgtatttatttaaaaagttaaacatttcaattt 50693544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 1149400 - 1149367
Alignment:
Q  131 caatatatttatttaaaaagttaaacatttcaat 164  Q
    |||| |||||||||||||||||||||||||||||    
T  1149400 caatgtatttatttaaaaagttaaacatttcaat 1149367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 30675015 - 30674985
Alignment:
Q  137 atttatttaaaaagttaaacatttcaattta 167  Q
    |||||||||||||||||||||||||||||||    
T  30675015 atttatttaaaaagttaaacatttcaattta 30674985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 44411165 - 44411135
Alignment:
Q  136 tatttatttaaaaagttaaacatttcaattt 166  Q
    |||||||||||||||||||||||||||||||    
T  44411165 tatttatttaaaaagttaaacatttcaattt 44411135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 20721337 - 20721307
Alignment:
Q  136 tatttatttaaaaagttaaacatttcaattt 166  Q
    |||||||||||||||||||||||||||||||    
T  20721337 tatttatttaaaaagttaaacatttcaattt 20721307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 166
Target Start/End: Complemental strand, 20397550 - 20397521
Alignment:
Q  137 atttatttaaaaagttaaacatttcaattt 166  Q
    ||||||||||||||||||||||||||||||    
T  20397550 atttatttaaaaagttaaacatttcaattt 20397521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 166
Target Start/End: Complemental strand, 37321768 - 37321739
Alignment:
Q  137 atttatttaaaaagttaaacatttcaattt 166  Q
    ||||||||||||||||||||||||||||||    
T  37321768 atttatttaaaaagttaaacatttcaattt 37321739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2730 times since January 2019
Visitors: 4011